IP Library Granted Patent US 9,828,396
Granted Patent B2
US 9,828,396 · App. 14/631,090 · Granted Nov 28, 2017

Alkyne compounds for treatment of complement mediated disorders

Inventors: Jason Allan Wiles (Madison, CT); Godwin Pais (Hamden, CT); Akihiro Hashimoto (Branford, CT); Venkat Rao Gadhachanda (Hamden, CT); Qiuping Wang (Bethany, CT); Dawei Chen (Guilford, CT); Xiangzhu Wang (Branford, CT); Atul Agarwal (Hamden, CT); Milind Deshpande (Madison, CT); Avinash S. Phadke (Branford, CT)
Assignee: Achillion Pharmaceuticals, Inc.
C07F9/5728A61K31/404A61K31/407A61K31/4162A61K31/4178A61K31/4184A61K31/4188A61K31/4192A61K31/437A61K31/4439A61K31/4709A61K31/496A61K31/506A61K31/549A61K31/55A61K31/675A61K31/683C07B59/002C07D209/14C07D209/40C07D209/42C07D401/14C07D403/06C07D403/08C07D403/12C07D403/14C07D405/12C07D405/14C07D413/06C07D413/14C07D417/06C07D417/12C07D417/14C07D471/04C07D487/04C07D487/14C07D491/113C07D495/04C07D513/04C07F5/025C07F5/027C07F7/0812C07F9/6561C07F9/65583C07F9/65616C07B2200/05
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Quick Facts
Patent No.
US 9,828,396
App. No.
14/631,090
Granted
Nov 28, 2017
Kind
B2
Abstract

Compounds, methods of use, and processes for making inhibitors of complement factor D comprising Formula I, or a pharmaceutically acceptable salt or composition thereof, wherein R 12 or R 13 on the A group is an alkyne (R 32 ) are provided. The inhibitors described herein target factor D and inhibit or regulate the complement cascade at an early and essential point in the alternative complement pathway, and reduce factor D's ability to modulate the classical and lectin complement pathways. The inhibitors of factor D described herein are capable of reducing the excessive activation of complement, which has been linked to certain autoimmune, inflammatory, and neurodegenerative diseases, as well as ischemia-reperfusion injury and cancer.

Claims (81)

1. A compound of Formula I

or a pharmaceutically acceptable salt thereof, wherein:

Q 1 is C(R 1 R 1′ );

Q 2 is C(R 2 R 2′ );

Q 3 is C(R 3 R 3′ );

X 1 is N and X 2 is CH;

R 1 , R 1′ , R 2 , R 2′ , R 3 , and R 3′ are independently chosen from hydrogen, halogen, hydroxyl, nitro, cyano, amino, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 alkoxy, C 2 -C 6 alkynyl, C 2 -C 6 alkanoyl, C 1 -C 6 thioalkyl, hydroxyC 1 -C 6 alkyl, aminoC 1 -C 6 alkyl, —C 0 -C 4 alkylNR 9 R 10 , —C(O)OR 9 , —OC(O)R 9 , —NR 9 C(O)R 10 , —C(O)NR 9 R 10 , —OC(O)NR 9 R 10 , —NR 9 C(O)OR 10 , C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy;

R 9 and R 10 are independently chosen at each occurrence from hydrogen, C 1 -C 6 alkyl, (C 3 -C 7 cycloalkyl)C 0 -C 4 alkyl, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), and —O—C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl);

or R 1 and R 2 form a 3- to 6-membered carbocyclic or aryl ring;

or R 2 and R 3 form a 3- to 6-membered carbocyclic ring;

or R 1 and R 1′ , or R 2 and R 2′ , or R 3 and R 3′ form a 3- to 6-membered carbocyclic spiro ring;

or R 1 and R 1′ , or R 2 and R 2′ , or R 3 and R 3′ form a 3- to 6-membered heterocyclic spiro ring;

each of which ring is unsubstituted or substituted with 1 or more substituents independently chosen from halogen, hydroxyl, cyano, —COOH, C 1 -C 4 alkyl, C 2 -C 4 alkenyl, C 2 -C 4 alkynyl, C 1 -C 4 alkoxy, C 2 -C 4 alkanoyl, hydroxyC 1 -C 4 alkyl, (mono- and di-C 1 -C 4 alkylamino)C 0 -C 4 alkyl, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), —O—C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy;

or R 1 and R 1′ , R 2 and R 2′ , or R 3 and R 3′ form a carbonyl group;

or R 1 and R 2 or R 2 and R 3 form a carbon-carbon double bond;

A is a group selected from:

R 5 and R 6 are independently selected from —CHO, —C(O)NH 2 , —C(O)NH(CH 3 ), C 2 -C 6 alkanoyl, hydrogen, hydroxyl, halogen, cyano, nitro, —COOH, —SO 2 NH 2 , vinyl, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 1 -C 6 alkoxy, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), —C(O)C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), —P(O)(OR 9 ) 2 , —OC(O)R 9 , —C(O)OR 9 , —C(O)N(CH 2 CH 2 R 9 )(R 10 ), —NR 9 C(O)R 10 , phenyl, or 5- to 6-membered heteroaryl;

R 8 and R 8′ are independently chosen from hydrogen, halogen, hydroxyl, C 1 -C 6 alkyl, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), C 1 -C 6 alkoxy, and (C 1 -C 4 alkylamino)C 0 -C 2 alkyl; or R 8 and R 8′ are taken together to form an oxo group; or R 8 and R 8′ can be taken together with the carbon that they are bonded to form a 3-membered carbocyclic ring;

X 11 is N or CR 11 ;

X 12 is CR 12 ;

X 13 is CR 13 ;

X 14 is N or CR 14 ;

one of R 12 and R 13 is chosen from R 31 and the other of R 12 and R 13 is chosen from R 32 ;

R 31 is chosen from hydrogen, halogen, hydroxyl, nitro, cyano, amino, —COOH, C 1 -C 2 haloalkyl, C 1 -C 2 haloalkoxy, C 1 -C 6 alkyl, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), C 2 -C 6 alkenyl, C 2 -C 6 alkanoyl, C 1 -C 6 alkoxy, C 2 -C 6 alkenyloxy, —C(O)OR 9 , C 1 -C 6 thioalkyl, —C 0 -C 4 alkylNR 9 R 10 , —C(O)NR 9 R 10 , —SO 2 R 9 , —SO 2 NR 9 R 10 , —OC(O)R 9 , and —C(NR 9 )NR 9 R 10 , each of which R 31 other than hydrogen, halogen, hydroxyl, nitro, cyano, C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy is unsubstituted or substituted with one or more substituents independently selected from halogen, hydroxyl, nitro, cyano, amino, —COOH, —CONH 2 C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy, and each of which R 31 is also optionally substituted with one substituent chosen from phenyl and 4- to 7-membered heterocycle containing 1, 2, or 3 heteroatoms independently chosen from N, O, and S; which phenyl or 4- to 7-membered heterocycle is unsubstituted or substituted with one or more substituents independently chosen from halogen, hydroxyl, nitro, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkanoyl, C 1 -C 6 alkoxy, (mono- and di-C 1 -C 6 alkylamino)C 0 -C 4 alkyl, C 1 -C 6 alkylester, —C 0 -C 4 alkyl)(C 3 -C 7 cycloalkyl), C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy;

R 32 is

R 11 and R 14 are independently chosen at each occurrence from hydrogen, halogen, hydroxyl, nitro, cyano, —O(PO)(OR 9 ) 2 , —(PO)(OR 9 ) 2 , C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 2 -C 6 alkanoyl, C 1 -C 6 alkoxy, C 1 -C 6 thioalkyl, —C 0 -C 4 alkyl(mono- and di-C 1 -C 6 alkylamino), —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), —C 0 -C 4 alkoxy(C 3 -C 7 cycloalkyl), C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy;

R 21 and R 22 are independently chosen at each occurrence from hydrogen, hydroxyl, cyano, amino, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, (C 3 -C 7 cycloalkyl)C 0 -C 4 alkyl, (phenyl)C 0 -C 4 alkyl, —C 1 -C 4 alkylOC(O)OC 1 -C 6 alkyl, —C 1 -C 4 alkylOC(O)C 1 -C 6 alkyl, —C 1 -C 4 alkylC(O)OC 1 -C 6 alkyl, (4- to 7-membered heterocycloalkyl)C 0 -C 4 alkyl having 1, 2, or 3 heteroatoms independently chosen from N, O, and S, and (5- or 6-membered unsaturated or aromatic heterocycle)C 0 -C 4 alkyl having 1, 2, or 3 heteroatoms independently chosen from N, O, and S;

R 23 is independently chosen at each occurrence from C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, (aryl)C 0 -C 4 alkyl, (C 3 -C 7 cycloalkyl)C 0 -C 4 alkyl, (phenyl)C 0 -C 4 alkyl, (4- to 7-membered heterocycloalkyl)C 0 -C 4 alkyl having 1, 2, or 3 heteroatoms independently chosen from N, O, and S, and (5- or 6-membered unsaturated or aromatic heterocycle)C 0 -C 4 alkyl having 1, 2, or 3 heteroatoms independently chosen from N, O, and S;

R 24 and R 25 are taken together with the nitrogen to which they are attached to form a 4- to 7-membered monocyclic heterocycloalkyl group, or a 6- to 10-membered bicyclic heterocyclic group having fused, spiro, or bridged rings;

R 30 is independently chosen at each occurrence from hydrogen, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, (aryl)C 0 -C 4 alkyl, (C 3 -C 7 cycloalkyl)C 0 -C 4 alkyl, (phenyl)C 0 -C 4 alkyl, (4- to 7-membered heterocycloalkyl)C 0 -C 4 alkyl having 1, 2, or 3 heteroatoms independently chosen from N, O, and S; (5- or 6-membered unsaturated or aromatic heterocycle)C 0 -C 4 alkyl having 1, 2, or 3 heteroatoms independently chosen from N, O, and S; COOH, Si(CH 3 ) 3 , COOR 30a , C 2 -C 6 alkanoyl, —B(OH) 2 , —C(O)(CH 2 ) 1-4 S(O)R 21 , —P(O)(OR 21 )(OR 22 ), —P(O)(OR 21 )R 22 , —P(O)R 21 R 22 , —NR 9 P(O)(NHR 21 )(NHR 22 ), —NR 9 P(O)(OR 21 )(NHR 22 ), —NR 9 P(O)(R 21 )(R 22 ), —C(S)R 21 , —NR 21 SO 2 R 22 , —NR 9 S(O)NR 10 R 22 , —NR 9 SO 2 NR 10 R 22 , —SO 2 NR 9 COR 22 , —SO 2 NR 9 CONR 21 R 22 , —NR 21 SO 2 R 22 , —C(O)NR 21 SO 2 R 22 , —C(NH 2 )NR 9 R 22 , —C(NH 2 )NR 9 S(O) 2 R 22 , —NR 9 C(O)OR 10 , —NR 21 OC(O)R 22 , —(CH 2 ) 1-4 C(O)NR 21 R 22 , —C(O)R 24 R 25 , —NR 9 C(O)R 21 , —C(O)R 21 , —NR 9 C(O)NR 9 R 10 , —NR 9 C(O)NR 24 R 25 , —(CH 2 ) 1-4 OC(O)R 21 ;

R 30a is C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, (C 3 -C 7 cycloalkyl)C 0 -C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (3- to 7-membered heterocycloalkyl)C 0 -C 4 alkyl- having 1, 2, or 3 heteroatoms independently chosen from N, O, and S, and (5- or 6-membered unsaturated or aromatic heterocycle)C 0 -C 4 alkyl having 1, 2, or 3 heteroatoms independently chosen from N, O, and S;

L is

where R 17 is hydrogen, C 1 -C 6 alkyl, or —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl) and R 18 and R 18′ are independently chosen from hydrogen, halogen, hydroxymethyl, and methyl; and m is 0, 1, 2, or 3;

B is a monocyclic or bicyclic carbocyclic; a monocyclic or bicyclic carbocyclic-oxy group; a monocyclic, bicyclic, or tricyclic heterocyclic group having 1, 2, 3, or 4 heteroatoms independently selected from N, O, and S and from 4 to 7 ring atoms per ring; C 2 -C 6 alkenyl; C 2 -C 6 alkynyl; —(C 0 -C 4 alkyl)(aryl); —(C 0 -C 4 alkyl)(heteroaryl); or —(C 0 -C 4 alkyl)(biphenyl) each of which B is unsubstituted or substituted with one or more substituents independently chosen from R 33 and R 34 , and 0 or 1 substituents chosen from R 35 and R 36 ;

R 33 is independently chosen from halogen, hydroxyl, —COOH, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkanoyl, C 1 -C 6 alkoxy, —C 0 -C 4 alkylNR 9 R 10 , —SO 2 R 9 , C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy;

R 34 is independently chosen from nitro, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 thioalkyl, -JC 3 -C 7 cycloalkyl, —B(OH) 2 , -JC(O)NR 9 R 23 , -JOSO 2 OR 21 , —C(O)(CH 2 ) 1-4 S(O)R 21 , —O(CH 2 ) 1-4 S(O)NR 21 R 22 , -JOP(O)(OR 21 )(OR 22 ), -JP(O)(OR 21 )(OR 22 ), -JOP(O)(OR 21) R 22 , -JP(O)(OR 21 )R 22 , -JOP(O)R 21 R 22 , -JP(O)R 21 R 22 , -JSP(O)(OR 21 )(OR 22 ), -JSP(O)(OR 21 )(R 22 ), -JSP(O)(R 21 )(R 22 ), -JNR 9 P(O)(NHR 21 )(NHR 22 ) -JNR 9 P(O)(OR 21 )(NHR 22 ), -JNR 9 P(O)(OR 21 )(OR 22 ), -JC(S)R 21 , -JNR 21 SO 2 R 22 , -JNR 9 S(O)NR 10 R 22 , -JNR 9 SO 2 NR 10 R 22 , -JSO 2 NR 9 COR 22 , -JSO 2 NR 9 CONR 21 R 22 , -JNR 21 SO 2 R 22 , -JC(O)NR 21 SO 2 R 22 , -JC(NH 2 )NR 22 , -JC(NH 2 )NR 9 S(O) 2 R 22 , -JOC(O)NR 21 R 22 , -JNR 21 C(O)OR 22 , -JNR 21 OC(O)R 22 , —(CH 2 ) 1-4 C(O)NR 21 R 22 , -JC(O)R 24 R 25 , -JNR 9 C(O)R 21 , -JC(O)R 21 , -JNR 9 C(O)NR 10 R 22 , —CCR 21 , —(CH 2 ) 1-4 OC(O)R 21 , and -JC(O)OR 23 ; each of which R 34 may be unsubstituted or substituted with one or more substituents independently chosen from halogen, hydroxyl, nitro, cyano, amino, oxo, —B(OH) 2 , —Si(CH 3 ) 3 , —COOH, —CONH 2 , —P(O)(OH) 2 , C 1 -C 6 alkyl, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), C 1 -C 6 alkoxy, —C 0 -C 2 alkyl(mono- and di-C 1 -C 4 alkylamino), C 1 -C 6 alkylester, C 1 -C 4 alkylamino, C 1 -C 4 hydroxylalkyl, C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy;

R 35 is independently chosen from naphthyl, naphthyloxy, indanyl, (4- to 7-membered heterocycloalkyl)C 0 -C 4 alkyl containing 1 or 2 heteroatoms chosen from N, O, and S, and bicyclic heterocycle containing 1, 2, or 3 heteroatoms independently chosen from N, O, and S, and containing 4- to 7-ring atoms in each ring; each of which R 35 is unsubstituted or substituted with one or more substituents independently chosen from halogen, hydroxyl, nitro, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkanoyl, C 1 -C 6 alkoxy, (mono- and di-C 1 -C 6 alkylamino)C 0 -C 4 alkyl, C 1 -C 6 alkylester, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), —SO 2 R 9 , C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy; and

R 36 is independently chosen from tetrazolyl, (phenyl)C 0 -C 2 alkyl, (phenyl)C 1 -C 2 alkoxy, phenoxy, and 5- or 6-membered heteroaryl containing 1, 2, or 3 heteroatoms independently chosen from N, O, B, and S, each of which R 36 is unsubstituted or substituted with one or more substituents independently chosen from halogen, hydroxyl, nitro, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkanoyl, C 1 -C 6 alkoxy, (mono- and di-C 1 -C 6 alkylamino)C 0 -C 4 alkyl, C 1 -C 6 alkylester, —C 0 -C 4 alkyl(C 3 -C 7 cycloalkyl), —SO 2 R 9 , —OSi(CH 3 ) 2 C(CH 3 ) 3 , —Si(CH 3 ) 2 C(CH 3 ) 3 , C 1 -C 2 haloalkyl, and C 1 -C 2 haloalkoxy; and

J is independently selected at each occurrence from a covalent bond, C 1 -C 4 alkylene, —OC 1 -C 4 alkylene, C 2 -C 4 alkenylene, and C 2 -C 4 alkynylene.

2. A method for the treatment of a disorder mediated by complement factor D, comprising administering an effective amount to a host in need thereof of a compound of claim 1 , optionally in a pharmaceutically acceptable carrier.

3. The method of claim 2 , wherein the host is a human.

4. The method of claim 2 , wherein the disorder is age-related macular degeneration (AMD).

5. The method of claim 2 , wherein the disorder is retinal degeneration.

6. The method of claim 2 , wherein the disorder is an ophthalmic disease.

7. The method of claim 2 , wherein the disorder is paroxysymal nocturnal hemoglobinuria (PNH).

8. The method of claim 2 , wherein the disorder is multiple sclerosis.

9. The method of claim 2 , wherein the disorder is arthritis.

10. The method of claim 2 , wherein the disorder is rheumatoid arthritis.

11. The method of claim 2 , wherein the disorder is a respiratory disease or a cardiovascular disease.

12. The compound of claim 1 , wherein the

ring is selected from:

13. The compound of claim 1 , wherein R 1 and R 1′ or R 3 and R 3′ can together form a 3- to 6-membered carbocyclic spiro ring or a 3- to 6-membered heterocyclic spiro ring containing 1 or 2 heteroatoms independently chosen from N, O, or S.

14. The compound of claim 1 , wherein R 2 and R 2′ can together to form a 3- to 6-membered carbocyclic spiro ring; or R 2 and R 2′ are taken together to form a 3- to 6-membered heterocyclic spiro ring.

15. The compound of claim 1 , wherein B is selected from:

16. The compound of claim 1 , wherein B is selected from:

17. The compound of claim 1 , wherein B is selected from:

18. The compound of claim 1 , wherein B is selected from:

19. The compound of claim 1 , wherein B is selected from:

20. The compound of claim 1 , wherein B is selected from:

21. The compound of claim 1 of Formula IB

or a pharmaceutically acceptable salt thereof.

22. The compound of claim 1 of Formula IC

or a pharmaceutically acceptable salt thereof.

23. The compound of claim 1 , wherein A is

24. The compound of claim 1 , wherein A is

25. The compound of claim 1 , wherein B is —(C 0 -C 4 alkyl)(aryl), —(C 0 -C 4 alkyl)(heteroaryl), or —(C 0 -C 4 alkyl)(biphenyl) each of which B is unsubstituted or substituted with one or more substituents independently chosen from R 33 and R 34 , and 0 or 1 substituents chosen from R 35 and R 36 .

26. The compound of claim 25 , wherein B is —(CH 2 )(aryl) substituted with two substituents independently chosen from R 33 and R 34 .

27. The compound of claim 26 , wherein R 33 is halogen.

28. The compound of claim 27 , wherein there are two R 33 substituents and one is chlorine and the other is fluorine.

29. The compound of claim 25 , wherein B is aryl or heteroaryl each of which B is unsubstituted or substituted with one or more substituents independently chosen from R 33 and R 34 .

30. The compound of claim 29 , wherein B is aryl.

31. The compound of claim 29 , wherein B is heteroaryl.

32. The compound of claim 31 , wherein heteroaryl is 2-pyridine.

33. The compound of claim 32 , wherein 2-pyridine is substituted with one substituent independently chosen from R 33 .

34. The compound of claim 33 , wherein R 33 is halogen.

35. The compound of claim 34 , wherein A is

36. The compound of claim 34 , wherein A is

37. The compound of claim 28 , wherein A is

38. The compound of claim 28 , wherein A is

39. The compound of claim 1 , wherein the compound is:

40. The compound of claim 1 , wherein the compound is:

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 2, 2016
From: PAIS, GODWIN; HASHIMOTO, AKIHIRO; GADHACHANDA, VENKAT RAO; WANG, QIUPING; CHEN, DAWEI; WANG, XIANGZHU; AGARWAL, ATUL; DESHPANDE, MILIND; PHADKE, AVINASH S.; WILES, JASON ALLAN
To: ACHILLION PHARMACEUTICALS, INC.
Reel/Frame 038178/0236 →
Continuity (4)
Provisional Application 61944189 · Feb 25, 2014
Provisional Application 62022916 · Jul 10, 2014
Provisional Application 62046783 · Sep 5, 2014
Related Publication 20150239868A1 · Aug 27, 2015