IP Library Granted Patent US 9,175,047
Granted Patent B2
US 9,175,047 · App. 13/129,118 · Granted Nov 3, 2015

Peptidomimetic macrocycles

Inventors: Huw M. Nash (Concord, MA); David Allen Annis (Cambridge, MA)
Assignee: Aileron Therapeutics, Inc.
C07K14/005C07K7/06C07K7/08C07K7/56C12N2760/16022
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Quick Facts
Patent No.
US 9,175,047
App. No.
13/129,118
Granted
Nov 3, 2015
Kind
B2
Abstract

Peptidomimetic macrocycles and methods of using such macrocycles for the treatment of viral disease are described.

Claims (26)

1. A peptidomimetic macrocycle-comprising a crosslinker linking the α-positions of at least two amino acids, and an amino acid sequence that is at least 80% identical to the amino acid sequence NleDVN$TLL$LKVAibAQ (SEQ ID NO: 113) and, wherein the peptidomimetic macrocycle has a structure of Formula (I):

wherein:

each A, C, D, and E is independently a natural or non-natural amino acid;

each B is independently a natural or non-natural amino acid, amino acid analog, or

each R 1 and R 2 are independently —H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or heterocycloalkyl, unsubstituted or substituted with halo-; each R 3 is independently hydrogen, alkyl, alkenyl, alkynyl, arylalkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, cycloalkylalkyl, cycloaryl, or heterocycloaryl, optionally substituted with R 5 ;

each L is independently a macrocycle-forming linker of the formula -L 1 -L 2 -;

each L 1 and L 2 is independently alkylene, alkenylene, alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene, cycloarylene, heterocycloarylene, or [—R 4 —K—R 4 —] n , each being optionally substituted with R 5 ;

each R 4 is independently alkylene, alkenylene, alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene, arylene, or heteroarylene;

each K is independently O, S, SO, SO 2 , CO, CO 2 , or CONR 3 ;

each R 5 is independently halogen, alkyl, —OR 6 , —N(R 6 ) 2 , —SR 6 , —SOR 6 , —SO 2 R 6 , —CO 2 R 6 , a fluorescent moiety, a radioisotope or a therapeutic agent;

each R 6 is independently —H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a radioisotope or a therapeutic agent;

each R 7 is independently —H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl, heteroalkyl, cycloalkylalkyl, heterocycloalkyl, cycloaryl, or heterocycloaryl, optionally substituted with R 5 , or part of a cyclic structure with a D residue;

each R 8 is independently —H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl, heteroalkyl, cycloalkylalkyl, heterocycloalkyl, cycloaryl, or heterocycloaryl, optionally substituted with R 5 , or part of a cyclic structure with an E residue;

amino acids represented as $ are alpha-Me S5-pentenyl-alanine olefin amino acids;

each v and w are independently integers from 1-1000;

u is an integer from 1-10;

each x, y and z are independently integers from 0-10; and

each n is independently an integer from 1-5.

2. The peptidomimetic macrocycle of claim 1 , wherein the amino acid sequence of the peptidomimetic macrocycle is at least about 90% identical to the amino acids sequence NleDVN$TLL$LKVAibAQ (SEQ ID NO: 113).

3. The peptidomimetic macrocycle of claim 1 , wherein the peptidomimetic macrocycle comprises a helix.

4. The peptidomimetic macrocycle of claim 1 , wherein the peptidomimetic macrocycle comprises a 3 10 helix.

5. The peptidomimetic macrocycle of claim 1 , wherein the peptidomimetic macrocycle comprises an α,α-disubstituted amino acid.

6. The peptidomimetic macrocycle of claim 1 , wherein x+y+z=6.

7. The peptidomimetic macrocycle of claim 1 , wherein the peptidomimetic macrocycle comprises an alpha helix.

8. The peptidomimetic macrocycle of claim 1 , wherein R 1 is alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or heterocycloalkyl, unsubstituted or substituted with halo-.

9. The peptidomimetic macrocycle of claim 1 , wherein R 1 and R 2 are independently alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or heterocycloalkyl, unsubstituted or substituted with halo-.

Assignments (2)
CORRECTIVE ASSIGNMENT TO CORRECT THE RECEIVING PARTY DATA IS AILERON THERAPEUTICS, INC. 281 ALBANY STREET CAMBRIDGE, MA 02139 PREVIOUSLY RECORDED ON REEL 026735 FRAME 0249. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT OF ASSIGNOR(S) INTEREST WILSON SONSINI GOODRICH & ROSATI 650 PAGE MILL ROAD PALO ALTO, CA 94304 IS NOT ASSIGNEE. Recorded Oct 16, 2013
From: NASH, HUW M.; ANNIS, DAVID ALLEN
To: AILERON THERAPEUTICS, INC.
Reel/Frame 031421/0256 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2011
From: NASH, HUW M.; ANNIS, DAVID ALLEN
To: WILSON SONSINI GOODRICH & ROSATI
Reel/Frame 026735/0248 →
Continuity (2)
Provisional Application 61144706 · Jan 14, 2009
Related Publication 20120040889A1 · Feb 16, 2012