IP Library Granted Patent US 7,608,594
Granted Patent B2
US 7,608,594 · App. 11/266,149 · Granted Oct 27, 2009

Novobiocin analogues as anticancer agents

Assignee: University of Kansas
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Quick Facts
Patent No.
US 7,608,594
App. No.
11/266,149
Granted
Oct 27, 2009
Kind
B2
Abstract

Novel analogues and derivatives of novobiocin are provided, including compounds having modifications to the amide side chain, coumarin ring, and sugar moieties. The compounds of the present invention are useful as heat shock protein 90 inhibitors, and may be used as anticancer and neuroprotective agents.

Claims (59)

1. The compounds according to Formula I

wherein R 1 is hydrogen, alkyl, alkenyl, alkynyl, carbocyclic, heterocyclic, aryl, aralkyl, carboxyl, amido, amino, sulfanyl, sulfenyl, sulfonyl, or ether; or R 1 together with X 2 and the atom to which R 1 is attached form a heterocyclic ring having 4 to 8 ring members with at least one heteroatom selected from oxygen or nitrogen; or R 1 together with X 4 and the atom to which R 1 is attached form a heterocyclic ring having 4 to 8 ring members with at least one heteroatom selected from oxygen or nitrogen;

wherein R 2 is hydrogen or hydroxy;

wherein R 3 is hydrogen or hydroxy;

wherein R 4 is hydrogen, methyl, hydroxy, carboxyl, —R 12 —O—R 13 , or —R 12 —R 14 ,

wherein R 12 is a covalent bond or alkyl, and R 13 is C-amido or acyl, and R 14 is N-amido, —POR 15 R 16 , —SO 2 R 17 , or sulfonamido and wherein R 15 , R 16 , R 17 are independently alkoxy;

wherein R 5 is hydrogen, alkyl, alkenyl, alkynyl, aryl, or aralkyl;

wherein R 6 is hydrogen, alkyl, alkenyl, alkynyl, aryl, aralkyl, alkoxy, aryloxy, or aralkoxy;

wherein X 1 is —O—, —CO—, or —N—;

wherein X 2 is —O—, —N—, —NR 18 —, —CR 19 —, or —CO—,

wherein R 18 and R 19 is hydrogen, alkyl, alkenyl, alkynyl; or X 2 together with R 1 and the atom to which R 1 is attached form a heterocyclic ring having 4 to 8 ring members with at least one heteroatom selected from oxygen or nitrogen;

wherein X 4 is —O—, —CR 20 —, —CO—, or —N—, wherein R 20 is hydrogen, alkyl, alkenyl, alkynyl, or wherein X 4 together with R 1 and the atoms to which they are attached form a heterocyclic ring having 4 to 8 ring members with at least one heteroatom selected from oxygen or nitrogen;

wherein X 5 , is —CR 21 — or —N—, wherein R 21 is hydrogen, alkyl, alkenyl, alkynyl;

wherein X 6 , is —CR 22 — or —N—, wherein R 22 is hydrogen, alkyl, alkenyl, alkynyl, alkoxy, aryl, aralkyl, halogen, or nitro; or X 6 together with X 9 and the carbon at position 7 form a heterocyclic ring having 4 to 8 ring members with at least one heteroatom selected from oxygen or nitrogen;

wherein X 8 , is —CR 23 — or —N—, wherein R 23 is hydrogen, alkyl, alkenyl, alkynyl;

wherein X 9 is alkyl, alkenyl, alkynyl, ether, secondary or tertiary amino, or sulfanyl; or X 9 together with X 6 and the carbon at position 7 form a heterocyclic ring having 4 to 8 ring members with at least one heteroatom selected from oxygen or nitrogen;

and wherein at least one of X 1 , X 2 , X 4 , X 5 , X 6 , X 8 is not —CR—;

wherein n is 0, 1, 2, or 3.

2. The coumarin compounds of claim 1 wherein X 1 is —O— and X 2 is —CO—.

3. The isocoumarin compounds of claim 1 wherein X 1 is —CO— and X 2 is —O—.

4. The compounds of claim 1 wherein R 4 and R 5 are both hydrogen.

5. The compounds of claim 1 wherein R 4 and R 5 are independently hydrogen or methyl, and R 6 is hydrogen.

6. The compounds of claim 1 such X 1 is nitrogen, R 1 together with X 2 and the atom to which R 1 is attached form a heterocyclic ring according to the following Formula I(F):

wherein R a , R b and R c are independently hydrogen, alkyl, alkenyl, alkynyl, carbocyclic, heterocyclic, aryl, or aralkyl; and wherein R b may also be oxidized to form a carbonyl.

7. The compounds according to claim 6 wherein X 4 , X 5 , X 6 , and X 8 are all —CH—, R b is oxidized to form a carbonyl, and n is 1 according to the Formula I(F)(i):

8. The compounds according to claim 6 wherein X 9 is —O—, and R 2 and R 3 are hydroxyl, R 4 and R 5 are methyl, R 6 is methoxy, and n is 1 according to the Formula I(F)(ii):

9. The compounds of claim 1 such that X 1 is nitrogen, X 2 is —CO—, and R 1 together with X 4 and the atom to which R 1 is attached form a heterocyclic ring according to the following Formula I(G):

wherein R a , R b and R c are independently hydrogen, alkyl, alkenyl, alkynyl, carbocyclic, heterocyclic, aryl, or aralkyl; and wherein R b may also be oxidized to form a carbonyl.

10. The compounds according to claim 9 wherein X 4 , X 5 , X 6 , X 8 are all —CH—, and n is 1 according to the Formula I(G)(i):

11. The compounds according to claim 10 , wherein X 9 , is —O— and R 2 and R 3 are hydroxyl, R 4 and R 5 are methyl, R 6 is methoxy, and n is 1 according to the Formula I(G)(iii):

12. The compounds of claim 1 wherein that X 5 is nitrogen, X 1 is oxygen, and X 2 is —CO— according to the Formula I(H):

13. The compounds according to claim 12 wherein X 4 , X 6 , X 8 are all —CH—, and n is 1 according to the Formula I(H)(i):

14. The compounds according to claim 1 wherein R 5 is hydrogen, and R 2 and R 3 are independently —OH.

15. The compounds according to claim 1 wherein X 6 , is —CR 21 —, and R 21 is methoxy, ethoxy, or nitro, and R 2 and R 3 are independently —OH.

16. The compounds of claim 1 such that X 6 is carbon and X 9 is nitrogen, and X 6 together with X 9 and the carbon at position 7 form a heterocyclic ring according to the following Formula I(J):

wherein R a and R b are independently hydrogen, alkyl, alkenyl, alkynyl, carbocyclic, heterocyclic, aryl, or aralkyl; and wherein R b may also be oxidized to form a carbonyl.

17. The compounds according to claim 16 wherein R b is oxidized to form a carbonyl according to the Formula I(J)(i):

18. The compounds according to claim 17 wherein X 1 is —O— and X 2 is —CO—.

19. The compounds of claim 1 wherein X 1 is —CO— and X 2 is —NR 18 — according to the Formula I(K):

20. The compounds according to claim 19 wherein X 4 , X 5 , X 6 , X 8 are all —CH—, and n is 1 according to the Formula I(K)(i):

21. The compounds of claim 1 wherein X 4 , is —CR 20 — and R 20 is hydrogen and wherein X 8 is —CR 23 — and R 23 is hydrogen.

22. The compounds of claim 1 wherein that X 1 is —N— and X 2 is —CH— according to the Formula I(L):

23. The compounds according to claim 22 wherein X 4 , X 5 , X 6 , X 8 are all —CH— and n is 1 according to the Formula I(L)(i):

24. Dimers of the compounds of claim 1 , which are shown below:

wherein X is alkyl, alkenyl, alkynyl, aryl, alkylaryl, carbocylic, or heterocyclic.

25. Dimers of the compounds of claim 24 wherein R 2 and R 3 are both hydroxyl, and R 4 and R 5 are both methyl, and R 6 is methoxy according to the formula shown below:

26. A method of inhibiting heat-shock protein 90 activity by administering one of more of the compounds of claim 1 to a cell, and observing a decrease in the expression of a heat-shock protein 90 client protein.

27. The method of claim 26 wherein said client protein comprises Her-2, phospho-AKT, or HIF-1alpha.

28. The compounds of claim 1 selected from the group consisting of:

7-((2R,3R,4S,5R)-3,4-dihydroxy-5-methoxy-6,6-dimethyl-tetrahydro-2H-pyran-2-yloxy)-2H -chromen-2-one (B4);

7-((2R,3R,4S,5R)-3,4-dihydroxy-5-methoxy-6,6-dimethyl-tetrahydro-2H-pyran-2-yloxy)-4-methyl-3-phenyl-2H-chromen-2-one (C4);

8-(3,4-Dihydroxy-5-methoxy-6,6-dimethyl-tetrahydro-pyran-2-yloxy)-chromen-2-One (D4); and

6-(3,4-Dihydroxy-5-methoxy-6,6-dimethyl-tetrahydro-pyran-2-yloxy)-chromen-2-one (E4).

29. The compounds of claim 1 wherein R 1 is amido.

30. The compounds of claim 1 wherein R 1 is amido which is an N-amido according to —NR′COR″, wherein R′ and R″ are independently hydrogen, alkyl, alkenyl, alkynyl, alkoxy, carbocyclic, heterocyclic, aryl, or aralkyl.

31. The compounds of claim 1 wherein R 1 amido which is —NHCOCH 3 .

32. The compound of claim 1 which is

33. The compounds of claim 1 wherein X 4 is —CR 20 — and wherein R 20 is hydrogen.

34. The compound N-(7-((2R,3R,4S,5R)-3,4-dihydroxy-5-methoxy-6,6-dimethyl-tetrahydro-2H-py-ran-2-yloxy)-2-oxo-2H-chromen-3-yl) acetamide (A4).

Assignments (3)
CONFIRMATORY LICENSE Recorded May 3, 2010
From: UNIVERSITY OF KANSAS LAWRENCE
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 024324/0077 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 14, 2006
From: BLAGG, BRIAN S.; YU, XIAO MING
To: UNIVERSITY OF KANSAS
Reel/Frame 017779/0117 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 14, 2006
From: NECKERS, LEN
To: THE GOVERNMENT OF THE UNITED STATES OF AMERICA AS REPRESENTED BY THE SECRETARY OF THE DEPARTMENT OF HEALTH AND HUMAN SERVICES
Reel/Frame 017779/0158 →
Continuity (2)
Provisional Application 6062456600 · Nov 3, 2004
Related Publication 20060199776A1 · Sep 7, 2006