IP Library Granted Patent US 7,750,164
Granted Patent B2
US 7,750,164 · App. 11/652,383 · Granted Jul 6, 2010

Synthesis of epothilones, intermediates thereto, analogues and uses thereof

Assignee: Sloan-Kettering Institute for Cancer Research
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Quick Facts
Patent No.
US 7,750,164
App. No.
11/652,383
Granted
Jul 6, 2010
Kind
B2
Abstract

The present invention provides convergent processes for preparing epothilone A and B, desoxyepothilones A and B, and analogues thereof. Also provided are analogues related to epothilone A and B and intermediates useful for preparing same. The present invention further provides novel compositions based on analogues of the epothilones and methods for the treatment of cancer and cancer which has developed a multidrug-resistant phenotype.

Claims (106)

1. A method of preparing a compound having the structure:

wherein

Z is S or O;

Y is (OR 0 ) 2 , (SR 0 ) 2 , —(O—(CH 2 ) n —O)—, —(O—(CH 2 ) n —S)— or —(S—(CH 2 ) n —S)— where R O is a linear or branched alkyl, substituted or unsubstituted aryl or benzyl;

n is 2, 3 or 4;

R 1 is hydrogen or methyl;

R is linear or branched alkyl, alkoxyalkyl, substituted or unsubstituted aryloxyalkyl, trialkylsilyl, aryldialkylsilyl, diarylalkylsilyl, triarylsilyl, linear or branched acyl, substituted or unsubstituted aroyl or benzoyl; and

R′ and R″ are independently hydrogen, a linear or branched alkyl, substituted or unsubstituted aryl or benzyl, trialkylsilyl, dialkylarylsilyl, alkyldiarylsilyl, a linear or branched acyl, substituted or unsubstituted aroyl or benzoyl;

which comprises:

cross-coupling a haloolefin having the structure:

wherein X is a halogen, with a terminal hydroborane having the structure:

wherein

R* 2 B is a linear, branched or cyclic alkyl or substituted or unsubstituted aryl or benzyl boranyl moiety; and

under suitable conditions to form a cross-coupled compound having the structure:

2. The method of claim 1 , wherein R is acetyl; R′ is TBS; R″ is TPS; R* 2 B is derived from 9-BBN; and Y is (OMe) 2 .

3. A method of preparing an open-chain aldehyde having the structure:

which comprises:

1) preparing a compound having the structure:

wherein

Z is S or O;

Y is (OR 0 2 , (SR 0 ) 2 , —(O—(CH 2 ) n —O—, —(O—(CH 2 ) n —S)— or —(S—(CH 2 ) n —S)— where R 0 is a linear or branched alkyl, substituted or unsubstituted aryl or benzyl;

n is 2, 3 or 4;

R 1 is hydrogen or methyl;

R is linear or branched alkyl, alkoxyalkyl, substituted or unsubstituted aryloxyalkyl, trialkylsilyl, aryldialkylsilyl, diarylalkylsilyl, triarylsilyl, linear or branched acyl, substituted or unsubstituted aroyl or benzoyl; and

R′ and R″ are independently hydrogen, a linear or branched alkyl, substituted or unsubstituted aryl or benzyl, trialkylsilyl, dialkylarylsilyl, alkyldiarylsilyl, a linear or branched acyl, substituted or unsubstituted aroyl or benzoyl;

which comprises:

cross-coupling a haloolefin having the structure:

wherein X is a halogen,

with a terminal hydroborane having the structure:

wherein

R* 2 B is a linear, branched or cyclic alkyl or substituted or unsubstituted aryl or benzyl boranyl moeity; and

under suitable conditions to form a cross-coupled compound having the structure:

and

2) deprotecting the cross-coupled compound under suitable conditions to form an open-chain aldehyde having the structure:

4. The method of claim 1 , wherein Z is O.

5. The method of claim 1 , wherein Z is S.

6. The method of claim 1 , wherein R 1 is hydrogen.

7. The method of claim 1 , wherein R 1 is methyl.

8. The method of claim 4 , wherein R 1 is hydrogen.

9. The method of claim 5 , wherein R 1 is methyl.

10. A method of preparing a compound having the structure:

wherein

Z is S or O;

R 1 is hydrogen or methyl;

R′ and R″ are each independently hydrogen, a linear or branched alkyl, substituted or unsubstituted aryl or benzyl, trialkylsilyl, dialkylarylsilyl, alkyldiarylsilyl, a linear or branched acyl, substituted or unsubstituted aroyl or benzoyl;

comprising the steps of:

(a) cyclizing an open-chain aldehyde having the structure:

under suitable conditions to form a diastereomeric mixture of a protected cyclic alcohol having the structure:

said mixture comprising an α- and a β-alcohol component; and

(b) optionally isolating and oxidizing the β-alcohol formed in step (a) under suitable conditions to form a ketone and thereafter reducing the ketone under suitable conditions to form a diastereomeric mixture of the protected cyclic alcohol comprising substantially the α-alcohol.

11. The method of claim 10 wherein R′ is TBS and R″ is TPS.

12. The method of claim 10 further comprising the step of treating the protected cyclic alcohol formed in step (a) or (b) with a deprotecting agent under suitable conditions to form a cyclic diol having the structure:

13. The method of claim 10 , wherein Z is O.

14. The method of claim 10 , wherein Z is S.

15. The method of claim 10 , wherein R 1 is hydrogen.

16. The method of claim 10 , wherein R 1 is methyl.

17. The method of claim 13 , wherein R 1 is hydrogen.

18. The method of claim 14 , wherein R 1 is methyl.

19. A method of preparing an epothilone having the structure:

wherein

Z is S or O; and

R 1 is hydrogen or methyl;

which comprises:

(a) providing a desoxyepothilone having the structure:

and

(b) epoxidizing the desoxyepothilone formed in step (a) under suitable conditions to form the epothilone.

20. The method of claim 19 , further comprising the steps of:

(i) monoprotecting the cyclic diol having the structure:

wherein R′ is a linear or branched alkyl, substituted or unsubstituted aryl or benzyl, trialkylsilyl, dialkylarylsilyl, alkyldiarylsilyl, a linear or branched acyl, substituted or unsubstituted aroyl or benzoyl;

under suitable conditions to form a cyclic alcohol having the structure:

wherein R″ is a linear or branched alkyl, substituted or unsubstituted aryl or benzyl, trialkylsilyl, dialkylarylsilyl, alkyldiarylsilyl, a linear or branched acyl, substituted or unsubstituted aroyl or benzoyl;

(ii) oxidizing the cyclic alcohol under suitable conditions to form a ketone having the structure:

and

(iii) deprotecting the ketone under suitable conditions to form a desoxyepothilone having the structure:

21. The method of claim 19 , wherein Z is O.

22. The method of claim 19 , wherein Z is S.

23. The method of claim 19 , wherein R 1 is hydrogen.

24. The method of claim 19 , wherein R 1 is methyl.

25. The method of claim 21 , wherein R 1 is hydrogen.

26. The method of claim 22 , wherein R 1 is methyl.

27. A method comprising the steps of:

(a) cross-coupling a haloolefin having the structure:

wherein

Z is S or O;

R 1 is hydrogen or methyl; and

X is a halogen;

with a terminal hydroborane having the structure:

wherein

R′ and R″ are independently hydrogen, a linear or branched alkyl, substituted or unsubstituted aryl or benzyl, trialkylsilyl, dialkylarylsilyl, alkyldiarylsilyl, a linear or branched acyl, substituted or unsubstituted aroyl or benzoyl;

R* 2 B is a linear, branched or cyclic alkyl or substituted or unsubstituted aryl or benzyl boranyl moiety;

Y is (OR 0 ) 2 , (SR 0 ) 2 , —(O—(CH 2 ) n -O)—, —(O—(CH 2 ) n -S)— or -(S—(CH 2 ) n -S)— where R 0 is a linear or branched alkyl, substituted or unsubstituted aryl or benzyl; and

n is 2, 3 or 4;

under suitable conditions to form a cross-coupled compound having the structure:

(b) deprotecting the cross-coupled compound formed in step (a) under suitable conditions to form an open-chain aldehyde having the structure:

(c) cyclizing the open-chain aldehyde under suitable conditions to form a-diastereomeric mixture of a protected cyclic alcohol having the structure:

said mixture comprising an α- and a β-alcohol component;

(d) optionally isolating and oxidizing the β-alcohol formed in step (c) under suitable conditions to form a ketone and thereafter reducing the ketone under suitable conditions to form a diastereomeric mixture of the protected cyclic alcohol comprising substantially the α-alcohol;

(e) treating the protected cyclic alcohol formed in step (c) or (d) with a deprotecting agent under suitable conditions to form a cyclic diol having the structure:

(f) monoprotecting the cyclic diol under suitable conditions to form a cyclic alcohol having the structure:

wherein R is a linear or branched alkyl, substituted or unsubstituted aryl or benzyl, trialkylsilyl, dialkylarylsilyl, alkyldiarylsilyl, a linear or branched acyl, substituted or unsubstituted aroyl or benzoyl;

(g) oxidizing the cyclic alcohol under suitable conditions to form a ketone having the structure:

(h) deprotecting the ketone under suitable conditions to form a desoxyepothilone having the structure:

and

(i) epoxidizing the desoxyepothilone formed in step (h) under suitable conditions to form an epothilone having the structure:

28. The method of claim 10 , wherein in step (b) a diastereomeric mixture of the protected cyclic alcohol comprising substantially the α-alcohol is obtained.

29. The method of claim 27 , wherein in step (d) a diastereomeric mixture of the protected cyclic alcohol comprising substantially the α-alcohol is obtained.

Assignments (1)
CONFIRMATORY LICENSE Recorded Oct 10, 2012
From: SLOAN-KETTERING INSTITUTE FOR CANCER RES
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 029102/0287 →
Continuity (15)
Continuation 1069558200 · Oct 28, 2003
Continuation 1043146700 · May 7, 2003
Continuation 1037480500 · Feb 25, 2003
Continuation 1005869500 · Jan 28, 2002
Continuation 1000457100 · Dec 4, 2001
Continuation 0987451400 · Jun 5, 2001
Continuation 0980845100 · Mar 13, 2001
Continuation 0969161500 · Oct 18, 2000
Continuation 0898602500 · Dec 3, 1997
Provisional Application 6003228200 · Dec 3, 1996
Provisional Application 6003376700 · Jan 14, 1997
Provisional Application 6004756600 · May 22, 1997
Provisional Application 6004794100 · May 29, 1997
Provisional Application 6005553300 · Aug 13, 1997
Related Publication 20080004450A1 · Jan 3, 2008