Recombinant flavivirus vaccines
The invention provides recombinant flavivirus vaccines that can be used in the prevention and treatment of flavivirus infection. The vaccines of the invention contain recombinant flaviviruses including attenuating mutations.
1. A recombinant, attenuated flavivirus comprising a Yellow Fever virus in which a structural protein or proteins have been replaced with a corresponding structural protein or proteins of a second, different flavivirus, wherein (i) said flavivirus comprises at least first and second mutations that reduce viscerotropism of the flavivirus, relative to the viscerotropism of the flavivirus in the absence of the mutations, (ii) the first mutation comprises a deletion of 1 to 4 amino acids within an amino terminal region of the capsid protein, wherein said amino terminal region is proximal to, and includes the first 2 amino acids of, Helix I, and (iii) the second mutation is in the 3′ untranslated region (UTR) or the envelope protein.
2. The recombinant flavivirus of claim 1 , wherein the Yellow Fever virus is YF17D.
3. The recombinant flavivirus of claim 1 , wherein the second flavivirus is a West Nile virus.
4. The recombinant flavivirus of claim 1 , wherein the membrane and envelope proteins of the Yellow Fever virus are replaced with the membrane and envelope proteins of the second flavivirus.
5. The recombinant flavivirus of claim 3 , wherein the envelope protein comprises substitutions in envelope amino acids 107, 316, and 440.
6. The recombinant flavivirus of claim 1 , wherein the second mutation comprises a deletion in the 3′ UTR or envelope of said flavivirus.
7. The recombinant flavivirus of claim 1 , wherein the second mutation comprises a substitution in the 3′ UTR or envelope protein of said flavivirus.
8. The recombinant flavivirus of claim 6 , wherein the second mutation comprises at least one deletion in the 3′ UTR of the flavivirus of fewer than 30 contiguous nucleotides.
9. The recombinant flavivirus of claim 8 , wherein the second mutation destabilizes one or more regions of secondary structure within the 3′ UTR.
10. The recombinant flavivirus of claim 9 , wherein the one or more regions of secondary structure are in a non-conserved region of the 3′ UTR of the virus.
11. The recombinant flavivirus of claim 10 , wherein the second mutation is selected from the group consisting of d7, dA, dB, dC, and dD.
12. The recombinant flavivirus of claim 8 , wherein the second mutation comprises one or more nucleotides of conserved sequence 2 (CS2).
13. The recombinant flavivirus of claim 12 , wherein the second mutation is CS2 d5 or CS2 d16.
14. The recombinant flavivirus of claim 1 , wherein the first mutation is C1.
15. The recombinant flavivirus of claim 1 , wherein the first mutation is C2.
16. The recombinant flavivirus of claim 1 , wherein the second mutation comprises a substitution of an envelope amino acid.
17. The recombinant flavivirus of claim 16 , wherein the second, flavivirus is a West Nile virus and the second mutation comprises a substitution in an amino acid selected from the group consisting of envelope amino acids 138, 176, 177, 244, 264, and 280, or combinations thereof.
18. The recombinant flavivirus of claim 17 , wherein the second mutation comprises substitutions in a combination of envelope amino acids selected from the group consisting of 176, 177, and 280; 176, 177, 244, 264, and 280; and 138, 176, 177, and 280.
19. The recombinant flavivirus in claim 5 , wherein the second mutation further comprises a substitution in an amino acid selected from the group consisting of envelope amino acids 138, 176, 177, 244, 264, and 280, or combinations thereof.
20. The recombinant flavivirus of claim 1 , wherein the first and second mutations are C2+d7, C2+dB, or C2+dD.
21. The recombinant flavivirus of claim 1 , wherein the flavivirus further comprises a mutation in the hinge region of the envelope protein of the flavivirus.
22. A pharmaceutical composition comprising the recombinant flavivirus of claim 1 .
23. The recombinant flavivirus of claim 3 , wherein the second mutation is E#5.
24. The recombinant flavivirus of claim 8 , wherein the second mutation is a deletion in the 3′ UTR of the recombinant flavivirus of 2-25 nucleotides.
25. A recombinant, attenuated flavivirus comprising a Yellow Fever virus in which a structural protein or proteins have been replaced with a corresponding structural protein or proteins of a second, different flavivirus, wherein (i) said flavivirus comprises at least first and second mutations that reduce viscerotropism of the flavivirus, relative to the viscerotropism of the flavivirus in the absence of the mutations, (ii) the first mutation comprises at least one deletion in the 3′ untranslated region (UTR) of the flavivirus of fewer than 30 contiguous nucleotides, and (iii) the second mutation comprises a deletion of 1 to 4 amino acids within an amino terminal region of the capsid protein, wherein said amino terminal region is proximal to, and includes the first 2 amino acids of, Helix I.
26. The recombinant flavivirus of claim 25 , wherein the second mutation is C1.
27. The recombinant flavivirus of claim 25 , wherein the second mutation is C2.
28. A recombinant, attenuated flavivirus comprising a Yellow Fever virus in which a structural protein or proteins have been replaced with a corresponding structural protein or proteins of a second, different flavivirus, wherein (i) said flavivirus comprises at least first and second mutations that reduce viscerotropism of the flavivirus, relative to the viscerotropism of the flavivirus in the absence of the mutations, (ii) the first mutation comprises at least one deletion in the 3′ untranslated region (UTR) of the flavivirus of fewer than 30 contiguous nucleotides, and (iii) the second mutation comprises a substitution of an envelope amino acid.
29. The recombinant flavivirus of claim 28 , wherein the second, different flavivirus is a West Nile virus and the second mutation comprises a substitution in an amino acid selected from the group consisting of envelope amino acids 107, 138, 176, 177, 244, 264, 280, 316, and 440, or combinations thereof.
30. The recombinant flavivirus of claim 25 , wherein the first and second mutations are d7+C2, dB+C2, or dD+C2.
31. The recombinant flavivirus of claim 28 , wherein the flavivirus further comprises a mutation in the hinge region of the envelope protein of the flavivirus.
32. A recombinant, attenuated flavivirus comprising a Yellow Fever virus in which a structural protein or proteins have been replaced with a corresponding structural protein or proteins of a West Nile virus, wherein (i) said flavivirus comprises at least first and second mutations that reduce viscerotropism of the flavivirus, relative to the viscerotropism of the flavivirus in the absence of the mutations, (ii) the first mutation comprises at least one deletion in the 3′ untranslated region (UTR) of the flavivirus of fewer than 30 contiguous nucleotides, and (iii) the second mutation is E#5.