IP Library Patent Application 12375657
Patent Application
App. No. 12/375,657

CANCER STEM CELLS

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Patent No.
US None
App. No.
12/375,657
Abstract

Cancer stem cell populations characterized by expression of CD44 hi , ABCG2, β-catenin, CD117, CD133, ALDH, VLA-2, CD166, CD201, IGFR, and/or EGF1R, and methods of isolating and using the same.

Claims (89)

1 . An isolated cancer stem cell population comprising at least 90% cancer stem cells, wherein the cancer stem cells (i) express ABCG2 or express CD44 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin, (ii) are tumorigenic, (iii) are capable of self-renewal, and (iv) generate tumors comprising non-tumorigenic cells.

2 . The isolated cancer stem cell population of claim 1 , which comprises at least 95% cancer stem cells.

3 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells comprise less than about 5% of the origin tumor cell population.

4 . The isolated cancer stem cell population of claim 3 , wherein the cancer stem cells comprise less than about 2% of the origin tumor cell population.

5 . The isolated cancer stem cell population of claim 4 , wherein the cancer stem cells comprise less than about 1% of the origin tumor cell population.

6 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells expressing CD44 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 50% of the origin tumor cell population.

7 . The isolated cancer stem cell population of claim 6 , wherein the cancer stem cells expressing CD44 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 33% of the origin tumor cell population.

8 . The isolated cancer stem cell population of claim 7 , wherein the cancer stem cells expressing CD44 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 25% of the origin tumor cell population.

9 . The isolated cancer stem cell population of claim 8 , wherein the cancer stem cells expressing CD44 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 15% of the origin tumor cell population.

10 . The isolated cancer stem cell population of claim 9 , wherein the cancer stem cells expressing CD44 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 10% of the origin tumor cell population.

11 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells additionally express β-catenin, CD117, CD133, ALDH, VLA-2, CD166, CD201, IGFR, EGF1R, or a combination thereof.

12 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells do not express differentiation markers.

13 . The isolated cancer stem cell population of claim 12 , wherein the cancer stem cells are depleted of cells expressing CD26, Muc-1, Muc-2, villin, CD24, CEA, or CK20.

14 . The isolated cancer stem cell population of claim 1 , which is derived from colon.

15 . The isolated cancer stem cell population of claim 1 , wherein a subpopulation of about 10 cells has the capacity to form a palpable tumor.

16 . An enriched cancer stem cell population derived from a tumor cell population comprising cancer stem cells and non-tumorigenic cells, wherein the cancer stem cells (i) express ABCG2 or express CD44 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin, (ii) are tumorigenic, (iii) are capable of self-renewal, (iv) generate tumors comprising non-tumorigenic cells, and (iv) are enriched at least 2-fold compared to the tumor cell population.

17 . The enriched cancer stem cell population of claim 16 , wherein the cancer stem cells are enriched at least 5-fold compared to tumor-derived cell population.

18 . The enriched cancer stem cell population of claim 17 , wherein the cancer stem cells are enriched at least 10-fold compared to tumor-derived cell population.

19 . The enriched cancer stem cell population of claim 18 , wherein the cancer stem cells are enriched at least 50-fold compared to tumor-derived cell population.

20 . The enriched cancer stem cell population of claim 19 , wherein the cancer stem cells are enriched at least 100-fold compared to tumor-derived cell population.

21 . The enriched cancer stem cell population of claim 16 , wherein the cancer stem cells additionally express β-catenin, CD117, CD133, ALDH, VLA-2, CD166, CD201, IGFR, EGF1R, or a combination thereof.

22 . The enriched cancer stem cell population of claim 16 , wherein the cancer stem cells do not express differentiation markers of the tumor cell population.

23 . The enriched cancer stem cell population of claim 22 , wherein the cancer stem cells are depleted of cells expressing CD26, Muc-1, Muc-2, villin, CD24, CEA, or CK20.

24 . The enriched cancer stem cell population of claim 16 , which is derived from colon.

25 . The enriched cancer stem cell population of claim 16 , wherein a subpopulation of about 10 cells has the capacity to form a palpable tumor.

26 . A method of isolating a cancer stem cell population comprising:

(a) providing dissociated tumor cells, wherein a majority of the cells express CD44 at a low level, and wherein a minority of the cells express CD44 at a high level that is at least about 5-fold greater than the low level;

(b) contacting the dissociated tumor cells with an agent that specifically binds to CD44;

(c) selecting cells that specifically bind to the agent of (b) to an extent that shows a high level of CD44 expression that is at least about 5-fold greater than the low level;

whereby a cancer stem cell population is isolated.

27 . The method of claim 26 , wherein the cancer stem cell population comprises at least 90% cancer stem cells.

28 . The method of claim 27 , wherein the cancer stem cell population comprises at least 95% cancer stem cells.

29 . The method of claim 26 , wherein the cancer stem cell population is enriched in cancer stem cells at least 2-fold when compared to the dissociated tumor cells.

30 . The method of claim 29 , wherein the cancer stem cell population is enriched in cancer stem cells at least 5-fold when compared to the dissociated tumor cells.

31 . The method of claim 30 , wherein the cancer stem cell population is enriched in cancer stem cells at least 10-fold when compared to the dissociated tumor cells.

32 . The method of claim 26 , further comprising:

(d) contacting the dissociated tumor cells with an agent that specifically binds to ABCG2; and

(e) selecting cells that specifically bind to the agent of (d).

33 . The method of claim 26 , further comprising:

(d) contacting the dissociated tumor cells with one or more agents that specifically bind to ABCG2, CD117, CD133, ALDH, CD166, CD201, IGFR, EGF1R, or a combination thereof; and

(e) selecting cells that specifically bind to an agent or combination of agents of (d).

34 . The method of claim 26 , further comprising:

(d) contacting the dissociated tumor cells with one or more agents that specifically binds to a differentiation marker expressed by the tumor cells; and

(e) depleting the cancer stem cell population of cells that specifically bind to the one or more agents of (d).

35 . The method of claim 34 , wherein the differentiation marker is CD26.

36 . The method of claim 26 , wherein the agent that specifically binds CD44 is an anti-CD44 antibody.

37 . The method of claim 26 , wherein the selecting cells is performed by flow cytometry, fluorescence activated cell sorting, panning, affinity column separation, or magnetic selection.

38 . The method of claim 26 , wherein the dissociated tumor cells are colon cancer cells.

39 . A cancer stem cell population isolated according to the method of claim 26 .

40 . A method of isolating a cancer stem cell population comprising:

(a) providing dissociated tumor cells;

(b) contacting the dissociated tumor cells with an agent that specifically binds to ABCG2;

(c) selecting cells that specifically bind to the agent of (b);

whereby a cancer stem cell population is isolated.

41 . The method of claim 40 , wherein the cancer stem cell population comprises at least 90% cancer stem cells.

42 . The method of claim 41 , wherein the cancer stem cell population comprises at least 95% cancer stem cells.

43 . The method of claim 40 , wherein the cancer stem cell population is enriched in cancer stem cells at least 10-fold when compared to the dissociated tumor cells.

44 . The method of claim 43 , wherein the cancer stem cell population is enriched in cancer stem cells at least 50-fold when compared to the dissociated tumor cells.

45 . The method of claim 44 , wherein the cancer stem cell population is enriched in cancer stem cells at least 100-fold when compared to the dissociated tumor cells.

46 . The method of claim 40 , further comprising:

(d) contacting the dissociated tumor cells with one or more agents that specifically bind to CD44, CD117, CD133, ALDH, CD166, CD201, IGFR, EGF1R, or a combination thereof; and

(e) selecting cells that specifically bind to the one or more agents of (d).

47 . The method of claim 40 , further comprising:

(d) contacting the dissociated tumor cells with one or more agents that specifically binds to a differentiation marker expressed by the tumor cells; and

(e) depleting the cancer stem cell population of cells that specifically bind to the one or more agents of (d).

48 . The method of claim 40 , wherein the differentiation marker is CD26.

49 . The method of claim 40 , wherein the dissociated tumor cells comprise a majority of cells expressing CD44 at a low level and a minority of cells expressing CD44 at a high level that is at least about 5-fold greater than the low level; and wherein the method further comprises:

(d) contacting the dissociated tumor cells with an agent that specifically binds to CD44; and

(e) selecting cells that bind to the agent of (d) to an extent that shows a high level of CD44 expression that is at least about 5-fold greater than the low level.

50 . The method of claim 40 , wherein the agent that specifically binds ABCG2 is an anti-ABCG2 antibody.

51 . The method of claim 40 , wherein the selecting cells is performed by flow cytometry, fluorescence activated cell sorting, panning, affinity column separation, or magnetic selection.

52 . The method of claim 40 , wherein the dissociated tumor cells are colon cancer cells.

53 . A cancer stem cell population isolated according to the method of claim 40 .

54 . A method of testing efficacy of a cancer drug or candidate cancer drug comprising:

(a) providing an isolated cancer stem cell population according to claim 1 ;

(b) contacting the cancer stem cells with a cancer drug or a candidate cancer drug;

(c) observing a change in tumorigenic potential of the cancer stem cells following contacting the cancer stem cells with the cancer drug or candidate cancer drug.

55 . A method of testing efficacy of a cancer drug or candidate cancer drug comprising:

(a) providing an enriched cancer stem cell population according to claim 16 ;

(b) contacting the cancer stem cells with a cancer drug or a candidate cancer drug;

(c) observing a change in tumorigenic potential of the cancer stem cells following contacting the cancer stem cells with the cancer drug or candidate cancer drug.

56 . A method of testing efficacy of a cancer drug or candidate cancer drug comprising:

(a) providing a cancer stem cell population according to claim 39 ;

(b) contacting the cancer stem cells with a cancer drug or a candidate cancer drug;

(c) observing a change in tumorigenic potential of the cancer stem cells following contacting the cancer stem cells with the cancer drug or candidate cancer drug.

57 . A method of testing efficacy of a cancer drug or candidate cancer drug comprising:

(a) providing a cancer stem cell population according to claim 53 ;

(b) contacting the cancer stem cells with a cancer drug or a candidate cancer drug;

(c) observing a change in tumorigenic potential of the cancer stem cells following contacting the cancer stem cells with the cancer drug or candidate cancer drug.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 11, 2011
From: BIOGEN IDEC MA INC.
To: ECLIPSE THERAPEUTICS, INC.
Reel/Frame 027282/0071 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 16, 2011
From: CHU, PETER; PEACH, ROBERT
To: BIOGEN IDEC MA INC.
Reel/Frame 026459/0590 →