IP Library Granted Patent US 8,148,349
Granted Patent B2
US 8,148,349 · App. 12/519,038 · Granted Apr 3, 2012

Nucleoside cyclic phosphoramidates for the treatment of RNA-dependent RNA viral infection

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Quick Facts
Patent No.
US 8,148,349
App. No.
12/519,038
Granted
Apr 3, 2012
Kind
B2
Abstract

The present invention provides nucleoside cyclic phosphoramidates of formula (I), pharmaceutical compositions comprising the compounds of formula (I) and methods of inhibiting RNA-dependent RNA polymerase, inhibiting RNA-dependent RNA viral replication, and/or treating RNA-dependent RNA viral infection using the compounds of formula (I).

Claims (64)

1. A compound of the structural formula I:

or a pharmaceutically acceptable salt thereof: wherein

B is

 wherein the asterisk denotes the point of attachment to the rest of the compound;

n is 0, 1, or 2;

R 1 is hydrogen, methyl, or fluoromethyl;

R 2 is fluoro or OR 3 ;

R 3 is selected from the group consisting of hydrogen, methyl, C 1-16 alkylcarbonyl, C 2-18 alkenylcarbonyl, C 1-10 alkyloxycarbonyl, C 3-6 cycloalkylcarbonyl, C 3-6 cycloalkyloxycarbonyl, and an amino acyl residue of structural formula:

R 4 is hydrogen, C 1-5 alkyl, or phenyl; wherein alkyl is optionally substituted with one substituent selected from the group consisting of fluorine, hydroxy, methoxy, amino, carboxy, carbamoyl, guanidino, mercapto, methylthio, 1H-imidazolyl, and 1H-indol-3-yl; and wherein phenyl is optionally substituted with one to two substituents independently selected from the group consisting of halogen, hydroxy, and methoxy;

R 5 is hydrogen or methyl;

or R 4 and R 5 together with the carbon atom to which they attached form a 3- to 6-membered aliphatic spirocyclic ring system;

R 6 is hydrogen, C 1-16 alkyl, C 2-20 alkenyl, (CH 2 ) n C 3-6 cycloalkyl, phenyl, benzyl, or adamantyl; wherein alkyl, alkenyl, cycloalkyl, and adamantyl are optionally substituted with one to three substituents independently selected from halogen, hydroxy, carboxy, and C 1-8 alkoxy; and wherein phenyl and benzyl are optionally substituted with one to three substituents independently selected from halogen, hydroxy, cyano, C 1-4 alkoxy, trifluoromethyl, and trifluoromethoxy;

R 7 is hydrogen, C 1-5 alkyl, or phenyl C 0-2 alkyl;

R 8 is hydrogen, C 1-4 alkyl, C 1-4 acyl, benzoyl, C 1-4 alkyloxycarbonyl, phenyl C 0-2 alkyloxycarbonyl, C 1-4 alkylaminocarbonyl, phenyl C 0-2 alkylaminocarbonyl, C 1-4 alkylsulfonyl, or phenyl C 0-2 alkylsulfonyl;

R 9 is hydrogen, C 1-8 alkylcarbonyl, C 1-8 alkyloxycarbonyl, or [(di-C 1-8 alkylamino)-C 1-8 alkoxy]carbonyl; and

R 10 is hydrogen, C 1-8 alkyl, or C 1-8 alkylcarbonyl.

2. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein the compound is a compound of Formula I-A:

3. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein the compound is a compound of Formula I-B1:

4. The compound of claim 2 , or a pharmaceutically acceptable salt thereof, wherein

R 6 is hydrogen, C 1-16 alkyl, C 2-20 alkenyl, (CH 2 ) n C 3-6 cycloalkyl, phenyl, benzyl, or adamantyl; wherein alkyl, alkenyl, cycloalkyl, and adamantyl are optionally substituted with one to three substituents independently selected from halogen, hydroxy, carboxy, and C 1-4 alkoxy; and wherein phenyl and benzyl are optionally substituted with one to three substituents independently selected from halogen, hydroxy, cyano, C 1-4 alkoxy, trifluoromethyl, and trifluoromethoxy; and

R 9 is hydrogen, C 1-8 alkylcarbonyl, or C 1-8 alkyloxycarbonyl.

5. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 1 is methyl or fluoromethyl, and R 2 is hydroxy.

6. The compound of claim 5 , or a pharmaceutically acceptable salt thereof, wherein R 1 is methyl.

7. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 1 is methyl or fluoromethyl, and R 2 is fluoro.

8. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 5 is hydrogen and R 4 is selected from the group consisting of hydrogen, methyl, ethyl, n-propyl, isopropyl, isobutyl, 2-methyl-1-propyl, hydroxymethyl, fluoromethyl, mercaptomethyl, carboxymethyl, carbamoylmethyl, 1-hydroxyethyl, 2-carboxyethyl, 2-carbamoylethyl, 2-methylthioethyl, 4-amino-1-butyl, 3-amino-1-propyl, 3-guanidino-1-propyl, 1H-imidazol-4-ylmethyl, phenyl, 4-hydroxybenzyl, and 1H-indol-3-ylmethyl.

9. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 6 is C 1-8 alkyl, cyclohexyl, cyclopentyl, cyclohexylmethyl, 2-cyclohexylethyl, or 3-cyclohexyl-n-propyl, each of which is optionally substituted with one to three substituents independently selected from fluorine, hydroxy, and C 1-6 alkoxy.

10. The compound of claim 9 , or a pharmaceutically acceptable salt thereof, wherein R 6 is ethyl, butyl, or heptyl.

11. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 4 is methyl, R 5 is hydrogen, and R 6 is ethyl, butyl, or heptyl.

12. The compound of claim 1 , which is a compound of Formula II:

or a pharmaceutically acceptable salt thereof, wherein:

R 4 is C 1-4 alkyl;

R 6 is C 1-8 alkyl, C 1-8 alkyl substituted with C 1-6 alkoxy, cyclohexyl, cyclopentyl, cyclohexylmethyl, 2-cyclohexylethyl, or 3-cyclohexyl-n-propyl; and

R 9 is H, C 1-8 alkylcarbonyl, or [(di-C 1-4 alkylamino)-C 1-4 alkoxy]carbonyl.

13. The compound of claim 1 , which is a compound of Formula III-A:

or a pharmaceutically acceptable salt thereof.

14. The compound of claim 13 , which is a compound of Formula III-B:

or a pharmaceutically acceptable salt thereof.

15. The compound of claim 1 , which is selected from the group consisting of:

n-butyl (2S)-2-{[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4-H-furo[3,2-d][1,2,3]dioxaphosphinin-2-yl]amino}propanoate;

ethyl (2S)-2-{[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4-H-furo[3,2-d][1,2,3]dioxaphosphinin-2-yl]amino}propanoate;

n-heptyl (2S)-2-{[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4-H-furo[3,2-d][1,2,3]dioxaphosphinin-2-yl]amino}propanoate;

tert-butyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

n-butyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

ethyl (2S)-2-{[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2d][1,3,2]dioxaphosphinin-2-yl]amino}butanoate;

ethyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-leucinate;

ethyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-norvalinate;

cyclopentyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2d][1,3,2]-dioxaphosphinin-2-yl]-L-alaninate;

ethyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2oxidotetrahydro-4H-furo[3,2-d][1,3,2]-dioxaphosphinin-2-yl]-L-alaninate;

n-heptyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2oxidotetrahydro-4Hfuro[3,2d][1,3,2]-dioxaphosphinin-2-yl]-L-alaninate;

cyclohexyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2oxidotetrahydro-4Hfuro[3,2d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

isopentyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2d][1,3,2]-dioxaphosphinin-2-yl]-L-alaninate;

3-methoxypropyl N[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

2-ethylbutyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

2-propylpentyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

2-(hexyloxy)ethyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

cycloheptyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

3-cyclohexylpropyl N-[(4aR,6R,7R,7aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl]-L-alaninate;

ethyl (2S)-2-({(4aR,6R,7R,7aR)-7-hydroxy-7-methyl-2-oxido-6-[2-oxo-4-[(2-propylpentanoyl)amino]pyrimidin-1(2H)-yl]tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl}amino)butanoate;

ethyl N-{(4aR,6R,7R,7aR)-7-hydroxy-7-methyl-2-oxido-6-[2-oxo-4-[(2-propylpentanoyl)amino]pyrimidin-1(2H)-yl]tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl}-L-alaninate;

n-heptyl N-{(4aR,6R,7R,7aR)-7-hydroxy-7-methyl-6-[4-[(1-methylene-2-propylpentyl)amino]-2-oxopyrimidin-1(2H)-yl]-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl}-L-alaninate; and

n-heptyl N-{(4aR,6R,7R,7aR)-6-[4-({[3-(dimethylamino)propoxy]carbonyl}amino)-2-oxopyrimidin-1(2H)-yl]-7-hydroxy-7-methyl-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-2-yl}-L-alaninate;

and pharmaceutically acceptable salts thereof.

16. A pharmaceutical composition comprising a compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.

17. A method for the treatment of hepatitis C virus infection in a mammal in need thereof, which comprises administering a compound of claim 1 , or a pharmaceutically acceptable salt thereof, to the mammal.

Assignments (7)
MERGER Recorded Aug 8, 2022
From: MERCK SHARP & DOHME CORP.
To: MERCK SHARP & DOHME LLC
Reel/Frame 061102/0145 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 21, 2014
From: ISTITUTO DI RICERCHE DI BIOLOGIA MOLECOLARE P. ANGELETTI S.P.A.
To: MSD ITALIA S.R.L.
Reel/Frame 032720/0243 →
CHANGE OF NAME Recorded Aug 29, 2012
From: SCHERING CORPORATION
To: MERCK SHARP & DOHME CORP.
Reel/Frame 028866/0511 →
MERGER Recorded Aug 27, 2012
From: MERCK SHARP & DOHME CORP.
To: SCHERING CORPORATION
Reel/Frame 028850/0515 →
CHANGE OF NAME Recorded Jan 27, 2010
From: MERCK & CO., INC.
To: MERCK SHARP & DOHME CORP.
Reel/Frame 023852/0595 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 26, 2009
From: DURETTE, PHILIPPE L.
To: MERCK & CO., INC
Reel/Frame 023422/0778 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 26, 2009
From: MEPPEN, MALTE; NARJES, FRANK; PACINI, BARBARA; GARDELLI, CRISTINA
To: ISTITUTO DI RICERCHE DI BIOLOGIA MOLECOLARE P. ANGELETTI S.P.A.
Reel/Frame 023422/0751 →