Systems, methods, media, and other embodiments associated with episcopic, histological, autoradiographic, and/or other imaging are described. One exemplary system includes a cryomicrotome, an episcopic imaging device and a histological imaging device, logic for registering episcopic images with histological images, and logic for manipulating images acquired from the episcopic imaging device and the histological imaging device.
1. An imaging system, comprising:
a cryomicrotome having a microtome chamber configured to house a sample, the cryomicrotome being configured to produce a slice from the sample;
an episcopic imaging device configured to acquire an episcopic image of the sample while it is housed in the microtome chamber;
a second imaging device configured to acquire a second non-episcopic image of one or more of, the sample, and the slice;
and
a register logic configured to register the episcopic image with the second non-episcopic image, the second imaging device being one of, a histological imaging device configured to acquire a histological image, an autoradiographic imaging device configured to acquire an autoradiographic image, a mass spectrometry imaging device configured to acquire a mass spectrometric image, a Raman spectroscopy device configured to acquire a Raman spectroscopic image, and a Fourier transform infrared spectroscopy (FTIR) device configured to acquire an FTIR image.
2. The system of claim 1 , including an in vivo logic configured to interface the system with one or more of, a medical imaging device, an in vivo fluorescence device, and an in vivo bioluminescence device, the medical imaging device being one of, a magnetic resonance imaging (MRI) device, a positron emission tomography (PET) device, an in vivo fluorescence device, an in vivo bioluminescence device, a computed tomography (CT) device, an ultrasound device, an optical coherence tomography (OCT) device, and a single photon emission computed tomography (SPECT) device,
the system being controllable to register medical imaging data from the medical imaging device to one or more of, episcopic imaging data from the episcopic imaging device, histological data, autoradiographic data, in vivo fluorescence data, in vivo bioluminescence data, CT data, ultrasound data, OCT data, and SPECT data.
3. A computer-based imaging method, comprising:
controlling a cryomicrotome to position a sample in a chamber in the cryomicrotome;
controlling an episcopic imaging device to acquire an episcopic image of the sample;
controlling the cryomicrotome to slice a slice from the sample;
selectively controlling a second imaging device to acquire one or more second non-episcopic images of one or more of, the sample, and the slice; and
controlling a register logic to register the episcopic image and one or more of the second non-episcopic images;
where the second imaging device is one of, a histological imaging device, an autoradiographic imaging device, a Fourier transform infrared spectroscopy (FTIR) device, an ultrasound device, a computed tomography (CT) device, and an optical coherence tomography (OCT) device.
4. The method of claim 3 , including selectively registering one or more of, the episcopic image, and a second non-episcopic image with a medical imaging data acquired from one or more of, a magnetic resonance imaging (MRI) device, a positron emission tomography (PET) device, an in vivo fluorescence device, an in vivo bioluminescence device, a computed tomography (CT) device, an ultrasound device, an optical coherence tomography (OCT) device, and a single photon emission computed tomography (SPECT) device.
5. An imaging system, comprising:
a sectioning apparatus configured to house a sectionable sample, to section the sectionable sample, and to acquire a section from the sectionable sample;
an episcopic imaging device configured to acquire an episcopic image of the sectionable sample while the sectionable sample is housed in the sectioning apparatus;
a second imaging device configured to acquire a second non-episcopic image of one or more of, the section, and the sectionable sample; and
a register logic configured to produce a registered image by registering the episcopic image and the second image.
6. The imaging system of claim 5 , where the sectionable sample is one of, a human tissue, a non-human animal tissue, and a vegetable tissue.
7. A non-transitory computer-readable medium storing computer executable instructions that when executed by a computer-based imaging system control the computer-based imaging system to perform a method, the method comprising:
controlling a sectioning apparatus to position a sectionable sample in a temperature controlled portion of the sectioning apparatus;
controlling an episcopic imaging device to acquire an image of the sectionable sample;
controlling the sectioning apparatus to slice a section from the sectionable sample;
controlling a second imaging device to acquire one or more second non-episcopic images of one or more of, the sectionable sample, and the section; and
controlling a registration logic to produce a registered image comprising the registration of the episcopic image and the second non-episcopic image.
8. The non-transitory computer-readable medium of claim 7 , the sectionable sample being one of, a human tissue, a non-human animal tissue, a vegetable tissue, and not a tissue.
9. The non-transitory computer-readable medium of claim 7 , the method comprising controlling the temperature of the sectionable sample to within a desired tolerance.
10. The non-transitory computer-readable medium of claim 9 , where controlling the temperature of the sectionable sample comprises bringing a temperature controlled gas in contact with the sectionable sample.
11. The non-transitory computer-readable medium of claim 7 , the second imaging device being one of, a histological imaging device, an ultrasound device, a computed tomography (CT) device, an optical coherence tomography (OCT) device, an autoradiographic imaging device, a mass spectrometry imaging device, a Raman spectroscopy device, a Fourier transform infrared spectroscopy (FTIR) device, a magnetic resonance imaging (MRI) device, a positron emission tomography (PET) device, and a single photon emission computed tomography (SPECT) device.
12. The non-transitory computer-readable medium of claim 7 , the method comprising:
controlling the episcopic imaging device and the second non-episcopic imaging device to collect a series of contiguous images;
selectively tiling together the series of contiguous images into a single image, and
processing the series into a three-dimensional representation.
13. The non-transitory computer-readable medium of claim 7 , the method comprising:
performing one or more of:
multi-planar reformatting of the registered image,
sub-sampling of a volume of the registered image,
color image segmentation of the registered image,
visualization of the registered image, and
sub-surface structure removal from the registered image.