IP Library Granted Patent US 8,716,478
Granted Patent B2
US 8,716,478 · App. 13/015,487 · Granted May 6, 2014

Boron-containing small molecules

Inventors: Kurt Jarnagin (San Mateo, CA); Tsutomu Akama (Sunnyvale, CA)
Assignee: Anacor Pharmaceuticals, Inc.
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 8,716,478
App. No.
13/015,487
Granted
May 6, 2014
Kind
B2
Abstract

Compounds, pharmaceutical formulations, and methods of treating anti-inflammatory conditions and/or helminth-associated diseases are disclosed.

Claims (77)

1. A compound, or a salt thereof, having a structure according to a formula which is selected from the group consisting of:

wherein

R d is selected from the group consisting of H, halogen, and unsubstituted alkyl;

R c is selected from the group consisting of cyano, chlorine, bromine, iodine, substituted alkyl, ethyl, propyl, iso-propyl, substituted or unsubstituted cycloalkyl, and substituted or unsubstituted alkoxy;

X is N or CH,

R b is selected from the group consisting of OR 4 and NR 4 R 5

wherein R 4 and R 5 are independently selected from the group consisting of H, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl,

with the proviso that R 4 and R 5 , together with the atoms to which they are attached, are optionlly combined to form a 4- to 8-membered substituted or unsubstituted heterocycloalkyl ring.

2. The compound, or a salt thereof, of claim 1 , wherein R c is chlorine or bromine or iodine.

3. The compound, or a salt thereof, of claim 1 , wherein R b is OR 4 , and R 4 is selected from the group consisting of substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl.

4. The compound, or a salt thereof, of claim 1 , wherein R b is OR 4 , and R 4 is selected from the group consisting of substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl and substituted or unsubstituted cycloalkyl.

5. The compound, or a salt thereof, of claim 1 , having a formula which is selected from the group consisting of

wherein R c is chlorine.

6. A pharmaceutical formulation comprising:

(a) the compound of claim 1 , or a pharmaceutically acceptable salt thereof; and

(b) a pharmaceutically acceptable excipient.

7. The compound, or a salt thereof, of claim 1 , wherein R d is H.

8. The compound, or a salt thereof, of claim 1 , wherein R d is selected from the group consisting of fluorine, chlorine, methyl, ethyl, propyl, and isopropyl.

9. The compound, or a salt thereof, of claim 1 , wherein R d is fluorine.

10. The compound, or a salt thereof, of claim 1 , wherein R c is selected from the group consisting of chlorine, bromine, iodine, and cyano.

11. The compound, or a salt thereof, of claim 1 , wherein R c is selected from the group consisting of cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, tertbutyl, pentyl, isopentyl, neopentyl, secpentyl, hexyl, isohexyl, and sec-hexyl.

12. The compound, or a salt thereof, of claim 1 , wherein R c is selected from the group consisting of cyclopropyloxy, cyclobutyloxy, cyclopentyloxy, cyclohexyloxy, methoxy, ethoxy, propyloxy, isopropyloxy, butyloxy, isobutyloxy, sec-butyloxy, tertbutyloxy, pentyloxy, isopentyloxy, neopentyloxy, secpentyloxy, hexyloxy, isohexyloxy, and sec-hexyloxy.

13. The compound, or a salt thereof, of claim 1 , wherein R c is selected from the group consisting of methoxy, ethoxy, propyloxy, and isopropyloxy, wherein each is substituted with at least one halogen.

14. The compound, or a salt thereof, of claim 1 , wherein R c is selected from the group consisting of trifluoromethyl, difluoromethyl, fluoromethyl, trichloromethyl, dichloromethyl, and chloromethyl.

15. The compound, or a salt thereof, of claim 1 , wherein R c is selected from the group consisting of trifluoromethyl, difluoromethyl, and fluoromethyl.

16. The compound, or a salt thereof, of claim 1 , wherein R c is selected from the group consisting of chlorine, CN, CF 3 , ethyl, iso-propyl, cyclopropyl, methoxy, ethoxy, and —OCF 3 .

17. The compound, or a salt thereof, of claim 1 , wherein R c is chlorine.

18. The compound, or a salt thereof, of claim 1 , wherein R b is selected from the group consisting of —OH, —OCH 3 , —OCH 2 CH 3 , —OCH 2 CH 2 OCH 3 , —OCH 2 C(O)OH, —OCH 2 C(O)OCH 2 CH 3 , —OCH 2 C(O)OC(CH 3 ) 3 , —C(O)OCH 3 , —C(O)OH, —C(O)H, —OCH 2 C(O)N(CH 2 CH 3 ) 2 ,

19. The compound, or a salt thereof, of claim 1 , wherein R b is OR 4 , wherein R 4 is alkyl optionally substituted with at least one halogen, hydroxyl, alkoxy, ether, carboxy or ester moiety.

20. The compound, or a salt thereof, of claim 1 , wherein R b is selected from the group consisting of —OH, —OCH 3 , —OCH 2 CH 3 , —OCH 2 CH 2 OCH 3 , —OCH 2 C(O)OH, —OCH 2 C(O)OCH 2 CH 3 , —OCH 2 C(O)OC(CH 3 ) 3 , —C(O)OCH 3 , —C(O)OH, —C(O)H, —OCH 2 C(O)N(CH 2 CH 3 ) 2 ,

21. The compound, or a salt thereof, of claim 1 , wherein R b is OR 4 , wherein R 4 is alkyl optionally substituted with at least one halogen, hydroxyl, alkoxy, ether, carboxy or ester moiety.

22. The compound, or a salt thereof, of claim 1 , wherein R b is OR 4 , wherein R 4 is unsubstituted alkyl.

23. The compound, or a salt thereof, of claim 1 , wherein R b is OR 4 , wherein R 4 is selected from the group consisting of methyl, ethyl, propyl, isopropyl, and isobutyl.

24. The compound, or a salt thereof, of claim 1 , wherein R b is O(CH 2 ) m1 R 31 , wherein m 1 is 0 or 1 or 2 or 3 or 4 or 5 or 6 and R 31 is a methyl moiety wherein at least one of the methyl hydrogens is substituted with a halogen.

25. The compound, or a salt thereof, of claim 1 , wherein R b is O(CH 2 ) m1 R 31 , wherein m 1 is 0 or 1 or 2 or 3 or 4 or 5 or 6 and R 31 is —CF 3 or —CHF 2 .

26. The compound, or a salt thereof, of claim 1 , wherein R b is —OCH 2 CF 3 or —OCH 2 CHF 2 .

27. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m1 OC(O)R 4d , wherein m1 is 2 or 3 or 4 or 5 or 6 and R 4d is unsubstituted alkyl.

28. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m1 OC(O)R 4d wherein m1 is 2 or 3 or 4 or 5 or 6 and R 4d is methyl.

29. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) 2 OC(O)CH 3 .

30. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m1 C(O)R 4d , wherein m1 is 2 or 3 or 4 or 5 or 6 and R 4d is unsubstituted alkyl.

31. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m1 C(O)R 4d , wherein m1 is 3 and R 4d is unsubstituted alkyl.

32. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m1 C(O)R 4d , wherein m 1 is 2 or 3 or 4 and R 4d is unsubstituted alkyl.

33. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m1 C(O)R 4d , wherein m1 is 2 or 3 or 4 or 5 or 6 and R 4d is methyl.

34. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) 3 C(O)CH 3 .

35. The compound, or a salt thereof, of claim 1 , wherein R b is OR 4 , wherein R 4 is alkyl substituted with unsubstituted alkoxy.

36. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m5 OR 30 , wherein m5 is 2 or 3 or 4 or 5 or 6 and R 30 is selected from the group consisting of H, unsubstituted alkyl, and unsubstituted tetrahydropyran.

37. The compound, or a salt thereof, of claim 1 , wherein Rb is —O(CH 2 ) m5 OR 30 , wherein m5 is 2 or 3 or 4 or 5 or 6 and R 30 is selected from the group consisting of C 1 , C 2 , C 3 , C 4 , C 5 , and C 6 alkyl.

38. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m5 OR 30 , wherein m5 is 2 or 3 and R 30 is selected from the group consisting of C 1 , C 2 , C 3 , C 4 , C 5 , and C 6 alkyl.

39. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m5 OR 30 , wherein m5 is 2 or 3 or 4 or 5 or 6 and R 30 is selected from the group consisting of C 1 , C 2 , and C 3 alkyl.

40. The compound, or a salt thereof, of claim 1 , wherein R b is —O(CH 2 ) m5 OR 30 , wherein m5 is 2 or 3 or 4 or 5 or 6 and R 30 is H.

41. The compound, or a salt thereof, of claim 1 , wherein R b is selected from the group consisting of —O(CH 2 ) 2 OCH(CH 3 ) 2 , —O(CH 2 ) 2 OCH 2 CH 3 , and —O(CH 2 ) 2 OH.

42. The compound, or a salt thereof, of claim 1 , wherein X is N.

43. The compound, or a salt thereof, of claim 1 , wherein R c is chlorine and R d is H.

44. The compound, or a salt thereof, of claim 1 , wherein R c is chlorine and R d is fluorine.

45. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(3-oxobutoxy)nicotinonitrile, 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-((5-oxohexyl)oxy)nicotinonitrile, and 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-((4-oxohexyl)oxy)nicotinonitrile.

46. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(4-oxopentyloxy)nicotinonitrile.

47. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 5-chloro-6-((6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yl)oxy)-2-(3-oxobutoxy)nicotinonitrile, 5-chloro-6-((6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yl)oxy)-2-((5-oxohexyl)oxy)nicotinonitrile, and 5-chloro-6-((6-fluoro-1-hydroxy-1-dihydrobenzo[c][1,2]oxaborol-5-yl)oxy)-2-((4-oxohexyl)oxy)nicotinonitrile.

48. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-(6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(4-oxopentyloxy)nicotinonitrile.

49. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-6-(3-oxobutoxy)pyridine-3,5-dicarbonitrile, 2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-6-(5-oxohexyloxy)pyridine-3,5-dicarbonitrile, and 2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-6-(4-oxohexyloxy)pyridine-3,5-dicarbonitrile.

50. The compound, or a salt thereof, of claim 1 , which is 2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-6-(4-oxopentyloxy)pyridine-3,5-dicarbonitrile.

51. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of cyclopropyl-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(3-oxobutoxy)nicotinonitrile, cyclopropyl-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(5-oxohexyloxy)nicotinonitrile, and cyclopropyl-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(4-oxohexyloxy)nicotinonitrile.

52. The compound, or a salt thereof, of claim 1 , which is cyclopropyl-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(4-oxopentyloxy)nicotinonitrile.

53. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(3-oxobutoxy)nicotinonitrile, 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(5-oxohexyloxy)nicotinonitrile, and 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(4-oxohexyloxy)nicotinonitrile.

54. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(4-oxopentyloxy)nicotinonitrile.

55. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 6-((1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yl)oxy)-2-(3-isopropoxypropoxy)-4-(trifluoromethyl)nicotinonitrile, 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-ethoxyethoxy)-4-(trifluoromethyl)nicotinonitrile, 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-propoxyethoxy)-4-(trifluoromethyl)nicotinonitrile, and 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isobutoxyethoxy)-4-(trifluoromethyl)nicotinonitrile.

56. The compound, or a salt thereof, of claim 1 , which is 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isopropoxyethoxy)-4-(trifluoromethyl)nicotinonitrile.

57. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-((1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yl)oxy)-2-(2-(trifluoromethoxy)propoxy)nicotinonitrile.

58. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-((1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yl)oxy)-2-(2-(trifluoromethoxy)ethoxy)nicotinonitrile.

59. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(3-isopropoxypropoxy)nicotinonitrile, 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-ethoxyethoxy)nicotinonitrile, 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-propoxyethoxy)nicotinonitrile, and 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isobutoxyethoxy)nicotinonitrile.

60. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-(7-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isopropoxyethoxy)nicotinonitrile.

61. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 5-chloro-6-(6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(3-isopropoxypropoxy)nicotinonitrile, 5-chloro-6-(6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-ethoxyethoxy)nicotinonitrile, 5-chloro-6-(6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-propoxyethoxy)nicotinonitrile, and 5-chloro-6-(6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isobutoxyethoxy)nicotinonitrile.

62. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-((6-fluoro-1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yl)oxy)-2-(2-isopropoxyethoxy)nicotinonitrile.

63. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(3-isopropoxypropoxy)-5-(trifluoromethyl)nicotinonitrile, 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-ethoxyethoxy)-5-(trifluoromethyl)nicotinonitrile, 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-propoxyethoxy)-5-(trifluoromethyl)nicotinonitrile, and 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isobutoxyethoxy)-5-(trifluoromethyl)nicotinonitrile.

64. The compound, or a salt thereof, of claim 1 , which is 6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isopropoxyethoxy)-5-(trifluoromethyl)nicotinonitrile.

65. The compound, or a salt thereof, of claim 1 , which is selected from the group consisting of 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(3-isopropoxypropoxy)nicotinonitrile, 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-ethoxyethoxy)nicotinonitrile, 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-propoxyethoxy)nicotinonitrile, and 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isobutoxyethoxy)nicotinonitrile.

66. The compound, or a salt thereof, of claim 1 , which is 5-chloro-6-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-5-yloxy)-2-(2-isopropoxyethoxy)nicotinonitrile.

67. The compound, or a salt thereof, of claim 1 , which has a structure according to a formula which is selected from the group consisting of:

Assignments (2)
CHANGE OF NAME Recorded Jan 11, 2024
From: ANACOR PHARMACEUTICALS, INC.
To: ANACOR PHARMACEUTICALS, LLC
Reel/Frame 066285/0908 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 5, 2011
From: JARNAGIN, KURT; AKAMA, TSUTOMU
To: ANACOR PHARMACEUTICALS, INC.
Reel/Frame 026077/0929 →
Continuity (7)
Provisional Application 61298860 · Jan 27, 2010
Provisional Application 61354187 · Jun 11, 2010
Provisional Application 61354188 · Jun 11, 2010
Provisional Application 61368211 · Jul 27, 2010
Provisional Application 61368205 · Jul 27, 2010
Provisional Application 61409849 · Nov 3, 2010
Related Publication 20120035132A1 · Feb 9, 2012