Mutations of the parkin gene
The invention concerns nucleic acids coding for mutated or truncated forms of the human parkin gene, or forms comprising multiplication of exons, and the corresponding proteins and antibodies. The invention also concerns methods and kits for identifying mutations of the parkin gene, and for studying compounds for therapeutic purposes.
1. An isolated nucleic acid molecule encoding a human parkin comprising a cDNA sequence of SEQ ID NO:1 with at least one genetic alteration comprising:
a) a deletion of one or more exons selected from the group consisting of: exon 2, exons 2-3, exons 2-4, exons 3-4, exons 3-6, exons 3-9, exon 5, exons 5-6, exon 6, exons 6-7, exons 7-9, and exon 8;
b) a multiplication of exons selected from the group consisting of:
a triplication of exon 2,
a duplication of exon 3,
a duplication of exon 6,
a duplication of exon 7,
and a duplication of exon 11;
c) a point mutation selected from the group consisting of:
a mutation from adenine to thymine at position 584,
a mutation from guanine to adenine at position 601,
a mutation from adenine to thymine at position 734,
a mutation from cytosine to thymine at position 867,
a mutation from thymine to adenine at position 905,
a mutation from cytosine to thymine at position 924,
a mutation from guanine to adenine at position 939,
a mutation from thymine to guanine at position 966,
a mutation from guanine to adenine at position 1084,
a mutation from cytosine to thymine at position 1101,
a mutation from guanine to cytosine at position 1239,
a mutation from guanine to adenine at position 1281,
a mutation from cytosine to adenine at position 1345,
a mutation from guanine to adenine at position 1390, and
a mutation from guanine to adenine at position 1459;
d) a deletion of 1 or more contiguous base pairs selected from the group consisting of:
a deletion of nucleotides adenine and guanine at positions 202-203,
a deletion of adenine at position 255, and
a deletion of nucleotides guanine and adenine at positions 1142-1143; or
e) an insertion of 1 or more contiguous base pairs selected from the group consisting of: an insertion of guanine and thymine at positions 321-322.
2. The isolated nucleic acid molecule according to claim 1 , wherein the genetic alteration comprises a point mutation that results in a nonsense mutation.
3. The isolated nucleic acid molecule according to claim 2 , wherein the nonsense mutation affects exon 7, exon 12, or a combination thereof.
4. The isolated nucleic acid molecule according to claim 2 , wherein the point mutation comprises the point mutation 905T→A that introduces a stop codon in place of the Cys268 residue encoded by the isolated nucleic acid molecule comprising the cDNA sequence of SEQ ID NO: 1, or the point mutation 1459G→A that introduces a stop codon in place of the Trp453 residue encoded by the isolated nucleic acid molecule comprising the cDNA sequence of SEQ ID NO: 1.
5. The isolated nucleic acid molecule according to claim 1 , wherein the genetic alteration is a point mutation that results in a missense mutation.
6. The isolated nucleic acid molecule according to claim 5 , wherein the missense mutation causes a nonconservative change in the amino acid sequence encoded by the cDNA sequence of SEQ ID NO:1.
7. The isolated nucleic acid molecule according to claim 6 , wherein the missense mutation comprises a point mutation selected from the group consisting of 584A→T (Lys161Asn), 601G→A (Ser167Asn), 734A→T (Lys211Asn), 867C→T (Arg256Cys), 924C→T (Arg275Trp), 939G→A (Asp280Asn), 966T→G (Cys289Gly), 1084G→A (Gly328Glu), 1101C→T (Arg334Cys), 1281G→A (Asp394Asn), and 1390G→A (Gly430Asp).
8. The isolated nucleic acid molecule according to claim 5 , wherein the missense mutation causes a conservative change in the amino acid sequence encoded by the cDNA sequence of SEQ ID NO: 1.
9. The isolated nucleic acid molecule according to claim 8 , wherein the missense mutation comprises a point mutation selected from the group consisting of 1239G→C (Val380Leu) and 1345C→A (Thr415Asn).
10. The isolated nucleic acid molecule according to claim 9 , wherein the missense mutation affects a potential phosphorylation site of a polypeptide encoded by said isolated nucleic acid molecule.
11. The isolated nucleic acid molecule according to claim 10 , wherein the mutation is Thr415Asn.
12. The isolated nucleic acid molecule according to claim 1 , wherein the genetic alteration comprises a deletion of one or more contiguous base pair(s) that causes a reading frame shift.
13. The isolated nucleic acid molecule according to claim 12 , wherein the deletion is selected from the group consisting of: a deletion of the nucleotides adenine and guanine at positions 202-203, a deletion of the nucleotide adenine at position 255, and a deletion of the nucleotides guanine and adenine at positions 1142-1143.
14. The isolated nucleic acid molecule according to claim 1 , wherein the genetic alteration comprises an insertion of one or more contiguous base pair(s) that causes a reading frame shift.
15. The isolated nucleic acid molecule according to claim 14 , wherein the insertion is an insertion of nucleotides guanine and thymine at positions 321-322.
16. An isolated nucleic acid molecule comprising the cDNA sequence of SEQ ID NO: 1.
17. A vector comprising the isolated nucleic acid of claim 1 , operatively associated with a promoter.
18. An isolated cell transformed or transfected with the vector of claim 17 .