IP Library Granted Patent US 9,481,675
Granted Patent B2
US 9,481,675 · App. 13/394,985 · Granted Nov 1, 2016

Gyrase inhibitors

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Quick Facts
Patent No.
US 9,481,675
App. No.
13/394,985
Granted
Nov 1, 2016
Kind
B2
Abstract

Novel gyrase inhibitors and related compositions and methods are useful for impeding bacterial growth. Compounds of Formula I are disclosed: wherein Y is N or CH; Z is N or CR 5 ; R 5 is H, a substituted or unsubstituted hydrocarbyl residue (1-3C) containing 0-2 heteroatoms selected from O, S and N, or is an inorganic residue; L is O, S, NR 7 , or CR 8 R 9 ; R 7 is H or C 1-3 alkyl; R 8 and R 9 are each independently H or C 1-3 alkyl; R 2 is H, a hydrocarbyl residue (1-40C) containing 0-10 heteroatoms selected from O, S and N optionally substituted with an inorganic residue; R 4 is H, an inorganic residue, or a hydrocarbyl residue (1-30C) containing 0-12 heteroatoms selected from O, S and N and containing 0-10 inorganic residues, wherein R 5 and R 4 together may join to form a fused ring; and R 6 is selected from the group consisting of H, C 1-5 alkyl, C 2-5 alkenyl, C 2-5 alkynyl, halo C 1-5 alkyl, halo C 2-5 alkenyl, halo C 2-5 alkynyl, C 1-5 hydroxyalkyl, C 1-5 alkyl chloride, C 2-5 alkenyl chloride, and C 2-5 alkynyl chloride; or a pharmaceutically-acceptable salt, ester, or prodrug thereof.

Claims (43)

1. A compound having the structure of Formula I,

wherein

Y is N;

Z is CR 5 ;

L is O, S, NR 7 , SO 2 or CR 8 R 9 ;

R 7 is H or C 1-3 alkyl;

R 8 and R 9 are each independently H or C 1-3 alkyl;

R 2 is H, Cl, COOCH 2 CH 3 , CH 3 , CH 2 CH 3 , or a hydrocarbyl residue (1-40C) containing 0-10 heteroatoms selected from O, S and N optionally substituted with an inorganic residue, wherein the hydrocarbyl residue comprises at least one aryl or heteroaryl moiety;

R 4 is H, an inorganic residue, or a hydrocarbyl residue (1-30C) containing 0-12 heteroatoms selected from O, S and N and containing 0-10 inorganic residues, optionally wherein R 5 and R 4 together join to form a fused ring;

R 6 is CH 3 or —CH 2 CH 3 ; and

R 5 is methyl, C(O)CH 3 , C(O)NH 2 , CH 2 OH, CF 3 , CN, CHF 2 , CHO, halogen;

or a pharmaceutically-acceptable salt, or ester thereof.

2. A compound having the structure of Formula I,

Y is N;

Z is CR 5 ;

R 5 is H, a substituted or unsubstituted hydrocarbyl residue (1-3C) containing 0-2 heteroatoms selected from O, S and N, or is an inorganic residue;

L is O, S, NR 7 , SO 2 or CR 8 R 9 ;

R 7 is H or C 1-3 alkyl;

R 8 and R 9 are each independently H or C 1-3 alkyl;

R 2 is H, Cl, COOCH 2 CH 3 , CH 3 , CH 2 CH 3 , or a hydrocarbyl residue (1-40C) containing 0-10 heteroatoms selected from O, S and N optionally substituted with an inorganic residue, wherein the hydrocarbyl residue comprises at least one aryl or heteroaryl moiety;

R 4 is H, an inorganic residue, or a hydrocarbyl residue (1-30C) containing 0-12 heteroatoms selected from O, S and N and containing 0-10 inorganic residues, optionally wherein R 5 and R 4 together join to form a fused ring; and

R 6 is —CH 3 or —CH 2 CH 3 ;

or a pharmaceutically-acceptable salt, or ester thereof,

wherein the at least one aryl or a heteraryl moiety of R 2 is directly linked to L.

3. The compound of claim 1 , wherein R 6 is ethyl.

4. The compound of claim 1 , having the structure of Formula II

wherein X is halogen;

R 4 is an amine-substituted heteroalicyclic ring; and

Q is N or N + —O − .

5. The compound of claim 4 ,

wherein X is Cl or Br;

wherein R 4 is a 4-7 membered heteroalicyclic ring containing an N heteroatom; and

wherein the 4-7 membered heteroalicyclic ring is substituted with NH 2 .

6. The compound of claim 4 ,

wherein X is Cl;

wherein R 4 is a 5-6 membered heteroalicyclic ring having one N heteroatom in the backbone of the ring;

wherein the N heteroatom is directly linked to the remainder of the compound; and

wherein the 5-6 membered heteroalicyclic ring is substituted with one NH 2 substituent.

7. The compound of claim 1 , wherein

R 4 is

8. The compound of claim 1 which is

9. The compound of claim 1 which is

10. The compound of claim 1 which is

Assignments (6)
MERGER Recorded Aug 8, 2022
From: MERCK SHARP & DOHME CORP.
To: MERCK SHARP & DOHME LLC
Reel/Frame 061102/0145 →
RELEASE OF SECURITY INTEREST Recorded Jul 24, 2015
From: ROYAL BANK OF CANADA, AS ADMINISTRATIVE AGENT
To: TRIUS THERAPEUTICS, INC.; OPTIMER PHARMACEUTICALS, INC.
Reel/Frame 036178/0175 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 9, 2015
From: TRIUS THERAPEUTICS LLC
To: MERCK SHARP & DOHME CORP.
Reel/Frame 036047/0228 →
CHANGE OF NAME Recorded Jul 9, 2015
From: TRIUS THERAPEUTICS, INC.
To: TRIUS THERAPEUTICS LLC
Reel/Frame 036084/0279 →
SECURITY AGREEMENT Recorded Nov 13, 2013
From: OPTIMER PHARMACEUTICALS, INC.; TRIUS THERAPEUTICS INC.
To: ROYAL BANK OF CANADA, AS ADMINISTRATIVE AGENT
Reel/Frame 031628/0850 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 26, 2012
From: CREIGHTON, CHRISTOPHER J; TARI, LESLIE WILLIAM; CHEN, ZHIYONG; HILGERS, MARK; LAM, THANH TO; LI, XIAOMING; TRZOSS, MICHAEL; ZHANG, JUNHU; FINN, JOHN; BENSEN, DANIEL
To: TRIUS THERAPEUTICS, INC.
Reel/Frame 028650/0789 →