DETECTION OF CANCER
Assays for detecting and grading disease by assessing amounts of GSTP1 nucleic acid and ADAM protein in a sample, and methods of using the assays. In some embodiments, the assays use single molecule sequencing to simultaneously assay both GSTP1 nucleic acid and ADAM protein. The methods are especially useful for detecting and grading cancers, for example, prostate cancer.
1 . A method for screening for a disease, the method comprising:
identifying a threshold parameter of GSTP1 nucleic acid and ADAM protein, wherein said threshold parameter is indicative of the absence of the disease;
assaying a tissue or body fluid sample to determine a parameter of GSTP1 nucleic acid and ADAM protein; and
identifying said sample as positive for the disease if each of said GSTP1 nucleic acid and ADAM protein are greater than said threshold parameter.
2 . The method of claim 1 , wherein the disease is cancer.
3 . The method of claim 2 , wherein the cancer is prostate cancer.
4 . The method of claim 1 , wherein the sample comprises blood or urine.
5 . The method of claim 1 , wherein the nucleic acid is DNA or RNA.
6 . The method of claim 1 , wherein said parameter comprises an amount of ADAM protein.
7 . The method of claim 1 , wherein said parameter comprises a methylation pattern in said GSTP1 nucleic acid.
8 . The method of claim 1 , wherein said parameter comprises a mutation in said GSTP1 nucleic acid.
9 . The method of claim 1 , wherein said ADAM protein is selected from ADAM 8, ADAM 10, and ADAM12.
10 . The method of claim 9 , wherein said ADAM protein is ADAM12.
11 . The method of claim 1 , wherein said assaying step comprises binding an aptamer to said ADAM protein.
12 . The method of claim 1 , wherein said assaying step comprises single molecule sequencing.
13 . The method of claim 12 , wherein said single molecule sequencing comprises ion semiconductor sequencing.
14 . The method of claim 1 , wherein said assaying step comprises amplifying said GSTP1 nucleic acid or an aptamer that binds to said ADAM protein.
15 . A method for grading a disease, the method comprising:
assaying a tissue or body fluid sample to determine a parameter of GSTP1 nucleic acid and ADAM protein;
comparing said parameter of GSTP1 nucleic acid and ADAM protein to a plurality of reference parameters of GSTP1 nucleic acid and ADAM protein, wherein said reference parameters are indicative of grades of said disease; and
identifying said sample as corresponding to a grade of said disease when said parameter of GSTP1 nucleic acid and ADAM protein is greater than a reference parameter corresponding to said grade.
16 . The method of claim 15 , wherein the disease is cancer.
17 . The method of claim 16 , wherein the cancer is prostate cancer.
18 . The method of claim 15 , wherein the sample comprises blood or urine.
19 . The method of claim 15 , wherein said parameter comprises an amount of said ADAM protein.
20 . The method of claim 15 , wherein said parameter comprises a methylation pattern in said GSTP1 nucleic acid.