Anionic acid-labile surfactants and methods of use
Anionic acid-labile surfactants may generally comprise compounds represented by the formula: wherein R 1 is independently selected from —(CH 2 ) 0-9 CH 3 , R 2 is selected from the group consisting of —H and —(CH 2 ) 0-5 CH 3 , Y is an anion, X is a cation, and n is an integer from 1 to 8. Methods of making and using the anionic acid-labile surfactants are also described. The anionic acid-labile surfactants may be used to facilitate the solubilization of proteins and other molecules in an aqueous environment.
1. A method of cleaving a compound of the formula:
wherein R 1 is independently selected from —(CH 2 ) 2-9 CH 3 , R 2 is selected from the group consisting of —H and —(CH 2 ) 0-5 CH 3 , Y is selected from the group consisting of —SO 3 − and —PO 3 − , X is a cation, and n is an integer from 1 to 8, the method comprising contacting the compound and an acid.
2. The method of claim 1 , wherein each R 1 is —(CH 2 ) 5 CH 3 , R 2 is —CH 3 , and n is 1.
3. The method of claim 1 , wherein each R 1 is —(CH 2 ) 6 CH 3 , R 2 is —CH 3 , and n is 1.
4. The method of claim 1 , wherein each R 1 is —(CH 2 ) 5 CH 3 , R 2 is —CH 3 , Y is —SO 3 − , X is selected from the group consisting of sodium, potassium, lithium, and ammonium ions, and n is 1.
5. The method of claim 1 , wherein each R 1 is —(CH 2 ) 6 CH 3 , R 2 is —CH 3 , Y is —SO 3 − , X is selected from the group consisting of sodium, potassium, lithium, and ammonium ions, and n is 1.
6. A method of solubilizing a sample selected from the group consisting of hydrophobic molecules, proteins, peptides, polypeptides, polymers, nucleic acids, lipids, lipophillic cellular components, hydrophilic extracellular components, and any combinations thereof, the method comprising contacting the sample and a compound of the formula:
wherein R 1 is independently selected from —(CH 2 ) 2-9 CH 3 , R 2 is selected from the group consisting of —H and —(CH 2 ) 0-5 CH 3 , Y is selected from the group consisting of —SO 3 − and —PO 3 − , X is a cation, and n is an integer from 1 to 8.
7. The method of claim 6 , wherein each R 1 is —(CH 2 ) 5 CH 3 , R 2 is —CH 3 , and n is 1.
8. The method of claim 6 , wherein each R 1 is —(CH 2 ) 6 CH 3 , R 2 is —CH 3 , and n is 1.
9. The method of claim 6 , wherein each R 1 is —(CH 2 ) 5 CH 3 , R 2 is —CH 3 , Y is —SO 3 − , X is selected from the group consisting of sodium, potassium, lithium, and ammonium ions, and n is 1.
10. The method of claim 6 , wherein each R 1 is —(CH 2 ) 6 CH 3 , R 2 is —CH 3 , Y is —SO 3 − , X is selected from the group consisting of sodium, potassium, lithium, and ammonium ions, and n is 1.
11. A method of isolating a sample selected from the group consisting of hydrophobic molecules, proteins, peptides, polypeptides, polymers, nucleic acids, lipids, lipophillic cellular components, hydrophilic extracellular components, and any combinations thereof, the method comprising:
adjusting the sample to pH 6-12;
mixing a solvent with a compound of the formula:
wherein R 1 is independently selected from —(CH 2 ) 2-9 CH 3 , R 2 is selected from the group consisting of —H and —(CH 2 ) 0-5 CH 3 , Y is selected from the group consisting of —SO 3 − and —PO 3 − , X is a cation, and n is an integer from 1 to 8;
contacting the sample with the mixture to form a sample-surfactant complex;
cleaving the surfactant from the sample-surfactant complex to form cleavage by-products; and
isolating the sample from the cleavage by-products.
12. The method of claim 11 , wherein the cleaving comprises:
adjusting the sample-surfactant complex to pH 2-3; and
incubating the sample-surfactant complex for 10-30 minutes at 4-50° C.
13. The method of claim 11 , wherein the solvent is selected from the group consisting of water; 0-50% methanol; 0-50% acetonitrile; 5-50 mM ammonium bicarbonate buffer; 5-50 mM Tris-HCl buffer; 5-50 mM sodium phosphate buffer, 5-50 mM ammonium acetate buffer, and any combination thereof.
14. The method of claim 11 , wherein the isolating comprises at least one of reversed phase sample clean-up techniques and solid phase extraction techniques.
15. The method of claim 11 comprising performing electrokinetic transport of the sample-surfactant complex.
16. The method of claim 15 , wherein the performing electrokinetic transport is electrophoresis.
17. The method of claim 11 comprising performing enzymatic digestion of the sample-surfactant complex.
18. The method of claim 11 , wherein the performing enzymatic digestion comprises:
incubating the sample-surfactant complex for less than one hour at 50-60° C.;
cooling the sample-surfactant complex to room temperature;
incubating the sample-surfactant complex for less than one hour at less than 30° C. in limited light;
mixing the sample-surfactant complex with an enzyme; and
incubating the mixture for less than 24 hours at 20-40° C. with shaking.
19. The method of claim 18 comprising desalting the sample-surfactant complex with an enzyme.
20. The method of claim 18 comprising performing mass spectrometry on the isolated sample.