IP Library Granted Patent US 8,802,657
Granted Patent B2
US 8,802,657 · App. 13/657,506 · Granted Aug 12, 2014

Compounds useful as Raf kinase inhibitors

Inventors: Jennifer Cossrow (San Mateo, CA); Bing Guan (Needham, MA); John Howard Jones (Framingham, MA); Gnanasambandam Kumaravel (Westford, MA); Alexey Lugovskoy (Woburn, MA); Hairuo Peng (Needham, MA); Noel Powell (Westford, MA); Brian C. Raimundo (San Francisco, CA); Hiroko Tanaka (Foster City, CA); Jeffrey Vessels (Marlborough, MA); Thomas Wynn (Salem, MA); Zhili Xin (Lexington, MA)
Assignees: Millennium Pharmaceuticals, Inc.; Sunesis Pharmaceuticals, Inc.
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Quick Facts
Patent No.
US 8,802,657
App. No.
13/657,506
Granted
Aug 12, 2014
Kind
B2
Abstract

The present invention provides compounds useful as inhibitors of Raf protein kinase. The present invention also provides compositions thereof, and methods of treating Raf-mediated diseases.

Claims (42)

1. A compound of formula I:

or a pharmaceutically acceptable salt thereof, wherein:

Cy 1 is an optionally substituted 5-6 membered partially unsaturated or aromatic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur;

Cy 2 is an optionally substituted 5-14 membered saturated, partially unsaturated, or aromatic monocyclic, bicyclic, or tricyclic ring having 0-4 heteroatoms, independently selected from nitrogen, oxygen, and sulfur;

L 1 is a direct bond or an optionally substituted, straight or branched C 1-6 alkylene chain;

L 2 is a direct bond, or is an optionally substituted, straight or branched C 1-6 alkylene chain wherein 1 or 2 methylene units of L 2 are optionally and independently replaced by —O—, —S—, —N(R)—, —C(O)—, —C(O)N(R)—, —N(R)C(O)N(R)—, —N(R)C(O)—, —N(R)C(O)O—, —OC(O)N(R)—, —SO 2 —, —SO 2 N(R)—, —N(R)SO 2 —, —OC(O)—, —C(O)O—, or a 3-6 membered cycloalkylene;

each R is independently hydrogen or an optionally substituted C 1-6 aliphatic group;

R 1 is hydrogen or an optionally substituted C 1-6 aliphatic group;

each of R x and R y is independently selected from —R 2 , -halo, —NO 2 , —CN, —OR 2 , —SR 2 , —N(R 2 ) 2 , —C(O)R 2 , —CO 2 R 2 , —C(O)C(O)R 2 , —C(O)CH 2 C(O)R 2 , —S(O)R 2 , —S(O) 2 R 2 , —SO 2 N(R 2 ) 2 , —OC(O)R 2 , —N(R 2 )C(O)R 2 , —N(R 2 )N(R 2 ) 2 , —N(R 2 )—C(═NR 2 )N(R 2 ) 2 , —C(═NR 2 )N(R 2 ) 2 , —C═NOR 2 , —N(R 2 )C(O)N(R 2 ) 2 , —N(R 2 )SO 2 N(R 2 ) 2 , —N(R 2 )SO 2 R 2 , and —OC(O)N(R 2 ) 2 ; and

each R 2 is independently hydrogen or an optionally substituted group selected from C 1-6 aliphatic, a C 6-10 monocyclic or bicyclic aryl ring, and a 5-10 membered saturated, partially unsaturated, or aromatic monocyclic or bicyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or

two R 2 on the same nitrogen are taken together with the nitrogen to form an optionally substituted 5-8 membered saturated, partially unsaturated, or aromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

2. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, wherein each of R x and R y is independently selected from R 2 , halo, —OR 2 , —N(R 2 ) 2 , —OC(O)R 2 , —N(R 2 )C(O)R 2 , —N(R 2 )N(R 2 ) 2 , —N(R 2 )C(O)N(R 2 ) 2 , —N(R 2 )SO 2 N(R 2 ) 2 , —N(R 2 )SO 2 R 2 , and —OC(O)N(R 2 ) 2 .

3. The compound according to claim 2 or a pharmaceutically acceptable salt thereof, wherein R x is hydrogen, an optionally substituted C 1-6 aliphatic group, or halo.

4. The compound according to claim 2 or a pharmaceutically acceptable salt thereof, wherein R y is selected from —N(R 2 ) 2 , an optionally substituted C 1-6 aliphatic, an optionally substituted C 6-10 monocyclic or bicyclic aryl ring, and an optionally substituted 5-10 membered saturated, partially unsaturated, or aromatic monocyclic or bicyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

5. The compound according to claim 4 or a pharmaceutically acceptable salt thereof, wherein R y is —NH 2 , —NHCH 3 , —NHCH 2 CH 3 , —NHCH 2 CH 2 CH 3 , —NHCH(CH 3 ) 2 , —NH(C 3 H 5 ), —NHCH 2 CH 2 CH 2 OH, —N(CH 2 CH 2 ) 2 O, or —NHCH 2 CH 2 CH 2 NH(CH 3 ) 2 .

6. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, wherein R y is —NH 2 and R x is halo.

7. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, wherein R y is an optionally substituted group selected from:

(a) a 5-6 membered saturated monocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, or sulfur;

(b) a 5-6 membered aromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and

(c) an 8-10 membered saturated, partially unsaturated or aromatic bicyclic ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

8. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, wherein R y is an optionally substituted group selected from phenyl, octahydroazocinyl, thiocyclopentanyl, thiocyclohexanyl, pyrrolidinyl, piperidinyl, piperazinyl, tetrahydrothiopyranyl, tetrahydrothiophenyl, dithiolanyl, tetrahydrofuranyl, tetrahydropyranyl, dioxanyl, thioxanyl, morpholinyl, oxathiolanyl, imidazolidinyl, pyrrolyl, pyrazolyl, imidazolyl, triazolyl, tetrazolyl, thiophenyl, furanyl, thiazolyl, isothiazolyl, thiadiazolyl, oxazolyl, isoxazolyl, oxadiazolyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, triazinyl, tetrazinyl, tetrahydropyridinyl, benzofuranyl, thianaphthenyl, pyrrolizinyl, indolyl, quinolinyl, isoquinolinyl, benzimidazolyl, imidazopyridinyl, purinyl, indazolyl, pyrrolopyridinyl, cinnolinyl, quinazolinyl, phthalazinyl, naphthyridinyl, and quinoxalinyl.

9. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, wherein R 1 is hydrogen and L 1 is an optionally substituted, straight or branched C 1-4 alkylene chain.

10. The compound according claim 1 or a pharmaceutically acceptable salt thereof, wherein Cy 1 is an optionally substituted pyrrolyl, pyrazolyl, imidazolyl, triazolyl, thiophenyl, furanyl, thiazolyl, isothiazolyl, thiadiazolyl, oxazolyl, isoxazolyl, or oxadiazolyl.

11. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, wherein L 2 is a direct bond or an optionally substituted, straight or branched C 1-4 alkylene chain wherein 1 methylene unit of L 2 is replaced by —C(O)N(R).

12. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, wherein Cy 2 is an optionally substituted group selected from:

(a) a 5-membered heteroaryl ring having 1-4 heteroatoms, independently selected from nitrogen, oxygen, and sulfur;

(b) phenyl or a 6-membered heteroaryl ring having 1-3 nitrogen atoms; or

(c) a 5,6-fused bicyclic heteroaryl ring having 1-4 heteroatoms selected from oxygen, sulfur and nitrogen.

13. The compound according to claim 12 or a pharmaceutically acceptable salt thereof, wherein Cy 2 is an optionally substituted group selected from phenyl, pyrrolyl, pyrazolyl, imidazolyl, triazolyl, tetrazolyl, thiophenyl, furanyl, thiazolyl, isothiazolyl, thiadiazolyl, oxazolyl, isoxazolyl, oxadiazolyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, triazinyl, tetrazinyl, pyrrolizinyl, indolyl, quinolinyl, isoquinolinyl, benzimidazolyl, imidazopyridinyl, indazolyl, purinyl, cinnolinyl, quinazolinyl, phthalazinyl, naphthyridinyl, quinoxalinyl, thianaphthenyl, and benzofuranyl.

14. A compound of formula II:

or a pharmaceutically acceptable salt thereof, wherein:

Cy 1 is an optionally substituted 5-6 membered, partially unsaturated, or aromatic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur;

Cy 2 is an optionally substituted 5-14 membered saturated, partially unsaturated, or aromatic monocyclic, bicyclic, or tricyclic ring having 0-4 heteroatoms, independently selected from nitrogen, oxygen, and sulfur;

R 1 is hydrogen or an optionally substituted C 1-6 aliphatic group;

each of R x and R y is independently selected from —R 2 , -halo, —NO 2 , —CN, —OR 2 , —SR 2 , —N(R 2 ) 2 , —C(O)R 2 , —CO 2 R 2 , —C(O)C(O)R 2 , —C(O)CH 2 C(O)R 2 , —S(O)R 2 , —S(O) 2 R 2 , —SO 2 N(R 2 ) 2 , —OC(O)R 2 , —N(R 2 )C(O)R 2 , —N(R 2 )N(R 2 ) 2 , —N(R 2 )—C(═NR 2 )N(R 2 ) 2 , —C(═NR 2 )N(R 2 ) 2 , —C═NOR 2 , —N(R 2 )C(O)N(R 2 ) 2 , —N(R 2 )SO 2 N(R 2 ) 2 , —N(R 2 )SO 2 R 2 , and —OC(O)N(R 2 ) 2 ; and

each R 2 is independently hydrogen or an optionally substituted group selected from C 1-6 aliphatic, a C 6-10 monocyclic or bicyclic aryl ring, and a 5-10 membered saturated, partially unsaturated, or aromatic monocyclic or bicyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or

two R 2 on the same nitrogen are taken together with the nitrogen to form an optionally substituted 5-8 membered saturated, partially unsaturated, or aromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

15. A pharmaceutical composition comprising a compound according to claim 1 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier, adjuvant, or vehicle.

16. The compound according to claim 14 or a pharmaceutically acceptable salt thereof, wherein R y is —NH 2 .

17. The compound according to claim 14 or a pharmaceutically acceptable salt thereof, wherein Cy 1 is optionally substituted thiazolyl.

18. The compound according to claim 14 or a pharmaceutically acceptable salt thereof, wherein R x is hydrogen or halo.

19. The compound according to claim 14 or a pharmaceutically acceptable salt thereof, wherein Cy 2 is optionally substituted pyridinyl.

Assignments (9)
SECURITY INTEREST Recorded Jul 14, 2026
From: CYDEX PHARMACEUTICALS, INC.; LIGAND PHARMACEUTICALS INCORPORATED; METABASIS THERAPEUTICS, INC.; XOMA (US) LLC; APEIRON BIOLOGICS GMBH
To: CITIBANK, N.A., AS ADMINISTRATIVE AGENT
Reel/Frame 075969/0966 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 3, 2024
From: VIRACTA THERAPEUTICS, INC.
To: XOMA (US) LLC
Reel/Frame 069474/0049 →
CHANGE OF NAME Recorded Apr 14, 2023
From: SUNESIS PHARMACEUTICALS, INC.
To: VIRACTA THERAPEUTICS, INC.
Reel/Frame 063349/0100 →
MERGER Recorded May 17, 2022
From: DOT THERAPEUTICS-2, INC.; DOT THERAPEUTICS-1, INC.
To: DAY ONE BIOPHARMACEUTICALS, INC.
Reel/Frame 059936/0096 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 8, 2021
From: CHEN, WEIRONG; FRANKLIN, LLOYD; GUAN, BING; JONES, JOHN HOWARD; KUMARAVEL, GNANASAMBANDAM; LANE, BENJAMIN; LITTKE, ADAM; LUGOVSKOY, ALEXEY; PENG, HAIRUO; POWELL, NOEL; VESSELS, JEFFREY; WYNN, THOMAS; XIN, ZHILI
To: BIOGEN IDEC MA INC.
Reel/Frame 055524/0371 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 8, 2021
From: BIOGEN IDEC MA INC.
To: MILLENNIUM PHARMACEUTICALS, INC.
Reel/Frame 055524/0525 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 8, 2021
From: BIOGEN IDEC MA INC.; SUNESIS PHARMACEUTICALS, INC.
To: BIOGEN IDEC MA INC.; SUNESIS PHARMACEUTICALS, INC.
Reel/Frame 055524/0457 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 8, 2021
From: COSSROW, JENNIFER; RAIMUNDO, BRIAN C.; TANAKA, HIROKO
To: SUNESIS PHARMACEUTICALS, INC.
Reel/Frame 055524/0173 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 14, 2021
From: MILLENNIUM PHARMACEUTICALS, INC.
To: DOT THERAPEUTICS-1, INC.
Reel/Frame 054921/0863 →
Continuity (3)
Continuation 12164762 · Jun 30, 2008
Provisional Application 60947291 · Jun 29, 2007
Related Publication 20130065858A1 · Mar 14, 2013