IP Library Patent Application 13782350
Patent Application
App. No. 13/782,350

CANCER STEM CELLS EXPRESSING ABCG2

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Patent No.
US None
App. No.
13/782,350
Abstract

Cancer Stem Cell populations characterized by expression of ABCG2 and methods of isolating and using the same are disclosed.

Claims (58)

1 . An isolated colon cancer stem cell population comprising at least 90% cancer stem cells, wherein the colon cancer stem cells (i) express ABCG2 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin, (ii) are tumorigenic, (iii) are capable of self-renewal, and (iv) generate tumors comprising nontumorigenic cells.

2 . The isolated cancer stem cell population of claim 1 , which comprises at least 95% cancer stem cells.

3 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells comprise less than about 5% of the origin tumor cell population.

4 . The isolated cancer stem cell population of claim 3 , wherein the cancer stem cells comprise less than about 2% of the origin tumor cell population.

5 . The isolated cancer stem cell population of claim 4 , wherein the cancer stem cells comprise less than about 1% of the origin tumor cell population.

6 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells expressing ABCG2 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 50% of the origin tumor cell population.

7 . The isolated cancer stem cell population of claim 6 , wherein the cancer stem cells expressing ABCG2 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 33% of the origin tumor cell population.

8 . The isolated cancer stem cell population of claim 7 , wherein the cancer stem cells expressing ABCG2 at a level that is at least 5-fold greater than non- tumorigenic cells of the same origin comprise less than about 25% of the origin tumor cell population.

9 . The isolated cancer stem cell population of claim 8 , wherein the cancer stem cells expressing ABCG2 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 15% of the origin tumor cell population.

10 . The isolated cancer stem cell population of claim 9 , wherein the cancer stem cells expressing ABCG2 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin comprise less than about 10% of the origin tumor cell population.

11 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells additionally express β-catenin, CD 117, CD 133, ALDH, VLA-2, CD 166, CD201, IGFR, EGF1R, or a combination thereof

12 . The isolated cancer stem cell population of claim 1 , wherein the cancer stem cells do not express differentiation markers.

13 . The isolated cancer stem cell population of claim 12 , wherein the cancer stem cells are depleted of cells expressing CD26, Muc-1, Muc-2, villin, CD24, CEA, or CK20.

14 . The isolated cancer stem cell population of claim 1 , wherein a subpopulation of about 10 cells has the capacity to form a palpable tumor.

15 . An enriched colon cancer stem cell population derived from a colon tumor cell population comprising colon cancer stem cells and non-tumorigenic colon cells, wherein the cancer stem cells (i) express ABCG2 at a level that is at least 5-fold greater than non-tumorigenic cells of the same origin, (ii) are tumorigenic, (iii) are capable of self-renewal, (iv) generate tumors comprising non-tumorigenic cells, and (iv) are enriched at least 2-fold compared to the tumor cell population.

16 . The enriched cancer stem cell population of claim 15 , wherein the cancer stem cells are enriched at least 5-fold compared to tumor-derived cell population.

17 . The enriched cancer stem cell population of claim 16 , wherein the cancer stem cells are enriched at least 10-fold compared to tumor-derived cell population.

18 . The enriched cancer stem cell population of claim 17 , wherein the cancer stem cells are enriched at least 50-fold compared to tumor-derived cell population.

19 . The enriched cancer stem cell population of claim 18 , wherein the cancer stem cells are enriched at least 100-fold compared to tumor-derived cell population.

20 . The enriched cancer stem cell population of claim 15 , wherein the cancer stem cells additionally express β-catenin, CD 117, CD 133, ALDH, VLA-2, CD 166, CD201, IGFR, EGF1R, or a combination thereof

21 . The enriched cancer stem cell population of claim 15 , wherein the cancer stem cells do not express differentiation markers of the tumor cell population.

22 . The enriched cancer stem cell population of claim 21 , wherein the cancer stem cells are depleted of cells expressing CD26, Muc-1, Muc-2, villin, CD24, CEA, or CK20.

23 . The enriched cancer stem cell population of claim 15 , wherein a subpopulation of about 10 cells has the capacity to form a palpable tumor.

24 . A method of isolating a colon cancer stem cell population comprising:

(a) providing dissociated colon tumor cells;

(b) contacting the dissociated colon tumor cells with an agent that specifically binds to ABCG2;

(c) selecting cells that specifically bind to the agent of (b);

whereby a colon cancer stem cell population is isolated.

25 . The method of claim 24 , wherein the cancer stem cell population comprises at least 90% cancer stem cells.

26 . The method of claim 25 , wherein the cancer stem cell population comprises at least 95% cancer stem cells.

27 . The method of claim 24 , wherein the cancer stem cell population is enriched in cancer stem cells at least 10-fold when compared to the dissociated tumor cells.

28 . The method of claim 27 , wherein the cancer stem cell population is enriched in cancer stem cells at least 50-fold when compared to the dissociated tumor cells.

29 . The method of claim 28 , wherein the cancer stem cell population is enriched in cancer stem cells at least 100-fold when compared to the dissociated tumor cells.

30 . The method of claim 24 , further comprising:

(d) contacting the dissociated tumor cells with one or more agents that specifically bind to CD44, CD 117, CD133, ALDH, CD166, CD201, IGFR, EGF1 R, or a combination thereof; and

(e) selecting cells that specifically bind to the one or more agents of (d).

31 . The method of claim 24 , further comprising:

(d) contacting the dissociated tumor cells with one or more agents that specifically binds to a differentiation marker expressed by the tumor cells; and

(e) depleting the cancer stem cell population of cells that specifically bind to the one or more agents of (d).

32 . The method of claim 24 , wherein the differentiation marker is CD26.

33 . The method of claim 24 , wherein the dissociated tumor cells comprise a majority of cells expressing CD44 at a low level and a minority of cells expressing CD44 at a high level that is at least about 5-fold greater than the low level; and wherein the method further comprises:

(d) contacting the dissociated tumor cells with an agent that specifically binds to CD44; and

(e) selecting cells that bind to the agent of (d) to an extent that shows a high level of CD44 expression that is at least about 5-fold greater than the low level.

34 . The method of claim 24 , wherein the agent that specifically binds ABCG2 is an anti-ABCG2 antibody.

35 . The method of claim 24 , wherein the selecting cells is performed by flow cytometry, fluorescence activated cell sorting, panning, affinity column separation, or magnetic selection.

36 . A cancer stem cell population isolated according to the method of claim 24 .

37 . A method of testing efficacy of a cancer drug or candidate cancer drug comprising:

(a) providing an isolated cancer stem cell population according to claim 1 ;

(b) contacting the cancer stem cells of said population with a cancer drug or a candidate cancer drug;

(c) observing a change in tumorigenic potential of the cancer stem cells following contacting the cancer stem cells with the cancer drug or candidate cancer drug.

38 . A method of testing efficacy of a cancer drug or candidate cancer drug comprising:

(a) providing an enriched cancer stem cell population according to claim 16 ;

(b) contacting the cancer stem cells with a cancer drug or a candidate cancer drug;

(c) observing a change in tumorigenic potential of the cancer stem cells following contacting the cancer stem cells with the cancer drug or candidate cancer drug.

39 . A method of testing efficacy of a cancer drug or candidate cancer drug comprising:

(a) providing a cancer stem cell population according to claim 36 ;

(b) contacting the cancer stem cells with a cancer drug or a candidate cancer drug;

(c) observing a change in tumorigenic potential of the cancer stem cells following contacting the cancer stem cells with the cancer drug or candidate cancer drug.

Assignments (5)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 6, 2015
From: ECLIPSE THERAPEUTICS, INC.
To: BIONOMICS INC.
Reel/Frame 036273/0008 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 4, 2015
From: CHU, PETER; PEACH, ROBERT
To: BIOGEN IDEC MA, INC.
Reel/Frame 036251/0771 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 4, 2015
From: BIOGEN IDEC MA INC.
To: ECLIPSE THERAPEUTICS, INC.
Reel/Frame 036251/0778 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 4, 2015
From: CHU, PETER; PEACH, ROBERT
To: BIOGEN IDEC MA, INC.
Reel/Frame 036251/0910 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 4, 2015
From: CHU, PETER; PEACH, ROBERT
To: BIOGEN IDEC MA, INC.
Reel/Frame 036251/0926 →