IP Library Granted Patent US 9,096,543
Granted Patent B2
US 9,096,543 · App. 13/891,044 · Granted Aug 4, 2015

Nuclear transport modulators and uses thereof

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Quick Facts
Patent No.
US 9,096,543
App. No.
13/891,044
Granted
Aug 4, 2015
Kind
B2
Abstract

The present invention relates to compounds of formula I: and pharmaceutically acceptable salts thereof, pharmaceutical compositions comprising the compounds of formula I, and methods of using said compounds, salts and compositions in the treatment of various disorders associated with CRM1 activity.

Claims (79)

1. A compound of formula I:

or a pharmaceutically acceptable salt thereof, wherein:

R 1 is selected from hydrogen and C 1 -C 4 alkyl;

R 2 is selected from O and S; and

R 3 is selected from —N(R 4 )—(C 3 -C 6 cycloalkyl), —C 1 -C 6 alkyl, —(C 0 -C 4 alkylene)-heterocyclyl, and —(C 0 -C 4 alkylene)-heteroaryl, wherein any alkyl, alkylene, heterocyclyl, and heteroaryl portion of R 3 is optionally and independently substituted; and

R 4 is selected from hydrogen and C 1 -C 4 alkyl.

2. The compound of claim 1 , wherein, R 1 is selected from hydrogen and methyl.

3. The compound of claim 2 , wherein R 1 is hydrogen.

4. The compound of claim 1 , wherein R 2 is O.

5. The compound of claim 1 , wherein R 4 is hydrogen.

6. The compound of claim 1 , wherein R 3 is selected from —N(R 4 )—(C 3 -C 6 cycloalkyl), —C 3 -C 6 alkyl, —(C 0 -C 1 alkylene)-heterocyclyl, and —(C 0 -C 1 alkylene)-heteroaryl, wherein:

any alkyl or alkylene portion of R 3 is optionally and independently substituted with one or more substituents selected from the group consisting of oxo and —N(R 5 ) 2 , wherein each R 5 is independently selected from hydrogen and C 1 -C 4 alkyl;

any heterocyclyl portion of R 3 comprises at least one nitrogen atom in a ring, and is optionally substituted with one or more substituents selected from the group consisting of C 1 -C 4 alkyl and oxo; and

any heteroaryl portion of R 3 comprises at least one nitrogen atom in a ring and is optionally substituted with one or more C 1 -C 4 alkyl.

7. The compound of claim 6 , wherein R 3 is —(C 0 -C 1 alkylene)-heterocyclyl.

8. The compound of claim 7 , wherein R 3 is —(C 1 alkylene)-heterocyclyl.

9. The compound of claim 7 wherein the heterocyclyl is selected from pyrazinyl, piperidinyl, morpholinyl, and pyrazolyl.

10. The compound of claim 9 , wherein the heterocyclyl is morpholinyl.

11. The compound of claim 1 , wherein any alkyl, alkylene, heterocyclyl, and heteroaryl portion of R 3 is optionally and independently substituted with one or more substituents selected from the group consisting of —OH, —SH, nitro, halogen, amino, cyano, C 1 -C 12 alkyl, C 2 -C 12 alkenyl or C 2 -C 12 alkynyl group, C 1 -C 12 alkoxy, C 1 -C 12 haloalkyl, C 1 -C 12 haloalkoxy and C 1 -C 12 alkyl sulfanyl.

12. The compound of claim 1 , wherein any alkyl, alkylene, heterocyclyl, and heteroaryl portion of R 3 is optionally and independently substituted with an amino group having the formula —N(R 5 ) 2 , wherein each R 5 is independently selected from hydrogen and C 1 -C 4 alkyl.

13. The compound of claim 1 , wherein:

any heteroaryl portion of R 3 is optionally and independently substituted with one or more substituents selected from the group consisting of —OH, —SH, nitro, halogen, amino, cyano, C 1 -C 12 alkyl, C 2 -C 12 alkenyl, C 2 -C 12 alkynyl, C 1 -C 12 alkoxy, C 1 -C 12 haloalkyl, C 1 -C 12 haloalkoxy and C 1 -C 12 alkyl sulfanyl; and

any alkyl, alkylene or heterocyclyl portion of R 3 is optionally and independently substituted with one or more substituents selected from the group consisting of oxo, —OH, —SH, nitro, halogen, amino, cyano, C 1 -C 12 alkyl, C 2 -C 12 alkenyl, C 2 -C 12 alkynyl, C 1 -C 12 alkoxy, C 1 -C 12 haloalkyl, C 1 -C 12 haloalkoxy and C 1 -C 12 alkyl sulfanyl.

14. The compound of claim 1 , wherein R 3 is selected from —N(R 4 )—(C 3 -C 6 cycloalkyl), —C 3 -C 6 alkyl, —(C 0 -C 1 alkylene)-heterocyclyl, and —(C 0 -C 1 alkylene)-heteroaryl, wherein:

any alkyl or alkylene portion of R 3 is optionally substituted with —N(R 5 ) 2 , wherein each R 5 is independently selected from hydrogen and C 1 -C 4 alkyl;

any heterocyclyl, and heteroaryl portion of R 3 comprises at least one nitrogen atom in a ring; and

any heterocyclyl, and heteroaryl portion of R 3 is optionally substituted with C 1 -C 4 alkyl.

15. The compound of claim 14 , wherein R 3 is selected from —C(CH 3 ) 3 , —CH(NH 2 )—CH(CH 3 ) 2 , —NH-cyclopropyl, —(CH 2 ) 0-1 -pyrazinyl, piperidinyl, hydroxypiperidinyl, N-methylpiperidinyl, —CH 2 -morpholin-4-yl, and methylpyrazolyl.

16. The compound of claim 15 , wherein R 3 is selected from —C(CH 3 ) 3 , —CH(NH 2 )—CH(CH 3 ) 2 , —NH-cyclopropyl, —(CH 2 ) 0-1 -pyrazin-2-yl, piperidin-3-yl, —CH 2 -morpholin-4-yl, and 5-methyl-1-H-pyrazol-4-yl.

17. The compound of claim 16 , wherein R 3 is selected from —C(CH 3 ) 3 , —NH-cyclopropyl, —CH 2 -pyrazin-2-yl, -pyrazin-2-yl, —CH 2 -morpholin-4-yl, and 5-methyl-1-H-pyrazol-4-yl.

18. The compound of claim 1 , represented by any one of the structural formulas set forth below:

Cmpd

No.

Compound Structure

 1

 2

 3

 4

 5

 6

 7

 8

 9

10

11

12

13

14

15

or a pharmaceutically acceptable salt thereof.

19. The compound of claim 18 , represented by any one of the following structural formulas:

or a pharmaceutically acceptable salt thereof.

20. A pharmaceutical composition comprising a compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.

21. A method for treating a disorder associated with CRM1 activity, comprising administering to a subject in need thereof a therapeutically effective amount of a compound of formula I:

or a pharmaceutically acceptable salt thereof, wherein:

R l is selected from hydrogen and C 1 -C 4 alkyl;

R 2 is selected from O and S; and

R 3 is selected from —N(R 4 )—(C 3 -C 6 cycloalkyl), —C 1 -C 6 alkyl, —(C 0 -C 4 alkylene)-heterocyclyl, and —(C 0 -C 4 alkylene)-heteroaryl, wherein any alkyl, alkylene, heterocyclyl, and heteroaryl portion of R 3 is optionally and independently substituted; and

R 4 is selected from hydrogen and C 1 -C 4 alkyl.

22. The method according to claim 21 , wherein the disorder is selected from a proliferative disorder, an inflammatory disorder, an autoimmune disorder, a viral infection, an ophthalmological disorder, a neurodegenerative disorder, a disorder of abnormal tissue growth, a disorder related to food intake, allergies, and a respiratory disorder.

23. The method according to claim 22 , wherein the disorder is cancer.

24. The method according to claim 23 , wherein the cancer is lymphoma.

25. The method according to claim 23 wherein the compound of formula I or pharmaceutically acceptable salt thereof is administered together with a second compound useful for treating cancer.

26. The method according to claim 21 , wherein the disorder is arthritis.

27. The method according to claim 21 , wherein the disorder is psoriasis.

28. The method according to claim 21 , wherein the disorder is obesity.

29. A method of promoting wound healing in a subject in need thereof, the method comprising administering to the subject a therapeutically effective amount of a compound of formula I:

or a pharmaceutically acceptable salt thereof, wherein:

R 1 is selected from hydrogen and C 1 -C 4 alkyl;

R 2 is selected from O and S; and

R 3 is selected from —N(R 4 )—(C 3 -C 6 cycloalkyl), —C 1 -C 6 alkyl, —(C 0 -C 4 alkylene)-heterocyclyl, and —(C 0 -C 4 alkylene)-heteroaryl, wherein any alkyl, alkylene, heterocyclyl, and heteroaryl portion of R 3 is optionally and independently substituted; and

R 4 is selected from hydrogen and C 1 -C 4 alkyl.

30. The method of claim 29 , wherein the wound is a surface wound, a surgical wound, an internal wound, a chronic wound, an ulcer, a burn, or a result of radiation exposure.

31. The method of claim 29 , wherein the wound is selected from the group consisting of a burn wound, an incised wound, an open wound, a surgical or post surgical wound, a diabetic lesion, a thermal burn, a chemical burn, a radiation burn, a pressure sore, a bedsore, and a condition related to diabetes or poor circulation.

32. The compound of claim 6 , wherein R 3 is selected from —C(CH 3 ) 3 , —NH-cyclopropyl, —CH 2 -pyrazin-2-yl, -pyrazin-2-yl, —CH 2 -morpholin-4-yl, and 5-methyl-l-H-pyrazol-4-yl.

33. The compound of claim 18 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

34. The method of claim 21 , wherein the disorder is stroke.

35. The method of claim 21 , wherein the disorder is traumatic brain injury.

Assignments (4)
PATENT SECURITY AGREEMENT Recorded Oct 10, 2025
From: KARYOPHARM THERAPEUTICS INC.
To: WILMINGTON SAVINGS FUND SOCIETY, FSB, AS COLLATERAL TRUSTEE
Reel/Frame 073058/0504 →
PATENT SECURITY AGREEMENT Recorded Oct 10, 2025
From: KARYOPHARM THERAPEUTICS INC.
To: WILMINGTON SAVINGS FUND SOCIETY, FSB, AS AGENT
Reel/Frame 073058/0647 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 20, 2024
From: BIOGEN MA INC.
To: KARYOPHARM THERAPEUTICS INC.
Reel/Frame 067779/0216 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 30, 2018
From: KARYOPHARM THERAPEUTICS INC.
To: BIOGEN MA INC.
Reel/Frame 045399/0233 →