IP Library Granted Patent US 9,109,001
Granted Patent B2
US 9,109,001 · App. 13/899,257 · Granted Aug 18, 2015

3′,5′-cyclic phosphoramidate prodrugs for HCV infection

Inventors: Christophe Claude Parsy (Jacou, FR); Francois-Rene Alexandre (Montpellier, FR); Cyril B. Dousson (Canet, FR); David Dukhan (Saint Gely du Fesc, FR); Claire Pierra (Montarnaud, FR); Dominique Surleraux (Wauthier-Braine, FR); Benjamin Alexander Mayes (Boston, MA); Adel M. Moussa (Burlington, MA); Alistair James Stewart (Lincoln, MA)
Assignee: IDENIX PHARMACEUTICALS, INC.
C07H19/20A61K31/7076A61K45/06C07H19/11
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Quick Facts
Patent No.
US 9,109,001
App. No.
13/899,257
Granted
Aug 18, 2015
Kind
B2
Abstract

Provided herein are compounds, compositions and methods for the treatment of Flaviviridae infections, including HCV infections. In certain embodiments, compounds and compositions of nucleoside derivatives are disclosed, which can be administered either alone or in combination with other anti-viral agents.

Claims (116)

1. A compound of Formula I:

or a pharmaceutically acceptable salt, solvate, stereoisomeric form, tautomeric form, or polymorphic form thereof, wherein:

X is alkoxyl, hydrogen, or hydroxyl;

Y is hydroxyl, acetoxyl, or fluoro;

Z is substituted alkyl; LC(O)O(L) p C(R) 3 , -LOC(O)(L) p C(R) 3 , -LC(O)O(L) p Cy, -L-S—S-(L p C(R) 3 , -LSC(O)(L) p C(R) 3 , L-S—S-(L) p C(R) 3 , or -LSC(O)(L) p C(R) 3 ;

each L is independently unsubstituted alkylene or substituted alkylene;

Cy is unsubstituted cycloalkyl; and

p is 0 or 1; and

R is hydrogen, alkyl, substituted alkyl, unsubstituted cycloalkyl, unsubstituted aryl, substituted aryl, or heteroaryl.

2. The compound of claim 1 wherein:

Z is -LC(O)O(L) p CR 3 , -LOC(O)(L) p CR 3 , or -LC(O)O(L) p Cy;

each L is independently alkylene or substituted alkylene;

Cy is unsubstituted cycloalkyl; and

p is 0 or 1.

3. The compound of claim 2 , wherein each L is independently C 1 -C 10 alkylene or C 1 -C 10 substituted alkylene.

4. The compound of claim 2 , wherein Cy is C 3 -C 10 unsubstituted cycloalkyl.

5. The compound of claim 1 wherein X is unsubstituted C 1 -C 10 alkoxyl.

6. The compound of claim 1 wherein X is hydroxyl.

7. The compound of claim 1 wherein Y is fluoro.

8. The compound of claim 1 wherein Y is acetoxyl.

9. The compound claim 1 wherein Y is hydroxyl.

10. The compound of claim 1 according to any of formulas II, III, or IV:

or a pharmaceutically acceptable salt, solvate, stereoisomeric form, tautomeric form, or polymorphic form thereof.

11. The compound of claim 1 according to formula Ia or Ib:

or a pharmaceutically acceptable salt, solvate, stereoisomeric form, tautomeric form, or polymorphic form thereof.

12. The compound of claim 1 wherein:

Z is -L-S—S-(L) p CR 3 ,or -LSC(O)(L) p CR 3 ;

each L is independently alkylene or substituted alkylene;

p is 0 or 1.

13. A pharmaceutical composition comprising the compound of claim 1 and a pharmaceutically acceptable excipient, carrier, or diluent.

14. A method for the treatment of a host infected with a hepatitis C virus, comprising the administration of an effective treatment amount of a compound of claim 1 .

15. The method of claim 14 , wherein the compound is administered in combination or alternation with a second anti-viral agent, wherein the second anti-viral agent is an interferon, a nucleotide analogue, a polymerase inhibitor, an NS3 protease inhibitor, an NS5A inhibitor, an entry inhibitor, a non-nucleoside polymerase inhibitor, a cyclosporine immune inhibitor, an NS4A antagonist, an NS4B-RNA binding inhibitor, a locked nucleic acid mRNA inhibitor, a cyclophilin inhibitor, or a combination thereof

16. The compound of claim 1 , wherein:

X is hydrogen, hydroxyl, or —OR′ wherein R′ is C 1 to C 10 unsubstituted alkyl;

Y is hydroxyl, acetoxyl, or fluoro;

Z is C 1 to C 10 alkyl substituted with:

fluoro, chloro, bromo, iodo, hydroxyl, —NH 2 , methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, phosphonate;

—NH 2 substituted with one or two C 1 to C 10 unsubstituted alkyl; or

—NH 2 substituted with one or two unsubstituted phenyl, unsubstituted biphenyl, or unsubstituted naphthyl; and

R is hydrogen, unsubstituted C 1 to C 10 alkyl, unsubstituted C 3 to C 15 cycloalkyl, unsubstituted phenyl, unsubstituted biphenyl, unsubstituted naphthyl, heteroaryl having from five to twenty ring atoms, or C 1 to C 10 alkyl substituted with:

fluoro, chloro, bromo, iodo, hydroxyl, —NH 2 , methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, phosphonate;

—NH 2 substituted with one or two unsubstituted C 1 to C 10 alkyl; or

—NH 2 substituted with one or two unsubstituted phenyl, unsubstituted biphenyl, or unsubstituted naphthyl.

17. The compound of claim 10 , wherein:

Y is hydroxyl, acetoxyl, or fluoro;

Z is C 1 to C 10 alkyl substituted with:

fluoro, chloro, bromo, iodo, hydroxyl, —NH 2 , methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, phosphonate;

—NH 2 substituted with one or two unsubstituted C 1 to C 10 alkyl; or

—NH 2 substituted with one or two unsubstituted phenyl, unsubstituted biphenyl, or unsubstituted naphthyl; and

R is hydrogen, unsubstituted C 1 to C 10 alkyl, unsubstituted C 3 to C 15 cycloalkyl, unsubstituted phenyl, unsubstituted biphenyl, unsubstituted naphthyl, heteroaryl having from five to twenty ring atoms, or C 1 to C 10 alkyl substituted with:

fluoro, chloro, bromo, iodo, hydroxyl, —NH 2 , methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, phosphonate;

—NH 2 substituted with one or two unsubstituted C 1 to C 10 alkyl; or

—NH 2 substituted with one or two unsubstituted phenyl, unsubstituted biphenyl, or unsubstituted naphthyl.

18. The compound of claim 11 , wherein:

X is hydrogen, hydroxyl, or —OR′ wherein R′ is unsubstituted C 1 to C 10 alkyl;

Y is hydroxyl, acetoxyl, or fluoro;

Z is C 1 to C 10 alkyl substituted with:

fluoro, chloro, bromo, iodo, hydroxyl, —NH 2 , methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, phosphonate;

—NH 2 substituted with one or two unsubstituted C 1 to C 10 alkyl; or

—NH 2 substituted with one or two unsubstituted phenyl, unsubstituted biphenyl, or unsubstituted naphthyl; and

R is hydrogen, unsubstituted C 1 to alkyl, unsubstituted C 3 to C 15 cycloalkyl, unsubstituted phenyl, unsubstituted biphenyl, unsubstituted naphthyl, heteroaryl having from five to twenty ring atoms, or C 1 to C 10 alkyl substituted with:

fluoro, chloro, bromo, iodo, hydroxyl, —NH 2 , methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, phosphonate;

—NH 2 substituted with one or two unsubstituted C 1 to C 10 alkyl; or

—NH 2 substituted with one or two unsubstituted phenyl, unsubstituted biphenyl, or unsubstituted naphthyl.

19. The compound of claim 10 , wherein:

R is H, and Z and Y are selected from one of the following combinations:

Z=(S)-iPrOC(O)CH(CH 3 )— and Y=F;

Z=(S)-iPrC(O)OCH 2 CH(CH 3 )— and Y=F;

Z=(S)-iBuOC(O)CH(CH 3 )— and Y=F;

Z=(S)-iPrOC(O)CH(CH 3 )— and Y=OH;

Z=EtOC(O)C(CH 3 ) 2 — and Y=F;

Z=(S)-iPrC(O)OCH 2 CH(Et)— and Y=F;

Z=EtC(O)O(CH 2 ) 2 — and Y=F;

Z=(S)-cPnOC(O)CH(CH 3 )— and Y=F;

Z=iPrOCO(CH 2 ) 2 — and Y=F; and

Z=tBuC(O)S(CH 2 ) 2 — and Y=F.

20. The compound of claim 19 , according to the formula:

wherein R is H, and Z and Y are selected from one of the following combinations:

Z=(S)-iPrOC(O)CH(CH 3 )— and Y=F;

Z=(S)-iPrC(O)OCH 2 CH(CH 3 )— and Y=F;

Z=(S)-iBuOC(O)CH(CH 3 )— and Y=F;

Z=(S)-iPrOC(O)CH(CH 3 )— and Y=OH;

Z=EtOC(O)C(CH 3 ) 2 — and Y=F;

Z=(S)-iPrC(O)OCH 2 CH(Et)— and Y=F;

Z=EtC(O)O(CH 2 ) 2 — and Y=F;

Z=(S)-cPnOC(O)CH(CH 3 )— and Y=F;

Z=iPrOCO(CH 2 ) 2 — and Y=F; and

Z=tBuC(O)S(CH 2 ) 2 — and Y=F;

or a pharmaceutically acceptable salt, solvate, tautomeric form, or polymorphic form thereof.

21. The compound according to claim 2 selected from

or a pharmaceutically acceptable salt, solvate, tautomeric form, or polymorphic form thereof.

22. The compound according to claim 12 selected from

or a pharmaceutically acceptable salt, solvate, tautomeric form, or polymorphic form thereof.

23. The compound of claim 1 according to formula (VII):

or a pharmaceutically acceptable salt, solvate, tautomeric form or polymorphic form thereof.

24. The compound of claim 1 according to formula (VIII):

or a pharmaceutically acceptable salt, solvate, tautomeric form or polymorphic form thereof.

25. A compound according to Formula V

or a pharmaceutically acceptable salt, solvate, tautomeric form, or polymorphic form thereof, wherein

X is unsubstituted alkoxyl, hydrogen, or hydroxyl;

Ring A is a 3-10 membered carbocyclic or heterocyclic ring;

R is hydrogen, unsubstituted alkyl, substituted alkyl, unsubstituted cycloalkyl, unsubstituted aryl, substituted aryl, or heteroaryl; and

Z is unsubstituted alkyl, substituted alkyl, unsubstituted arylalkyl, heteroarylalkyl, or unsubstituted cycloalkyl.

26. The compound of claim 25 where ring A is oxacyclopropyl or oxacyclobutyl.

27. A compound of Formula VI is provided:

or pharmaceutically acceptable salts, solvates, tautomeric forms or polymorphic forms thereof, wherein

X is unsubstituted alkoxyl, hydrogen, or hydroxyl;

Y is hydroxyl, acetoxyl, or fluoro;

Z is substituted alkyl; LC(O)O(L) p C(R) 3 , -LOC(O)(L) p C(R) 3 , -LC(O)O(L) p Cy, -L-S—S-(L) p C(R) 3 , -LSC(O)(L) p C(R) 3 , L-S—S-(L) p C(R) 3 , or -LSC(O)(L) p C(R) 3 ;

each L is independently unsubstituted alkylene or substituted alkylene;

Cy is unsubstituted cycloalkyl;

p is 0 or 1;

R is hydrogen, unsubstituted alkyl, substituted alkyl, unsubstituted cycloalkyl, unsubstituted aryl, substituted aryl, or heteroaryl;

W is independently hydrogen, fluoro, or methyl; and

each of R B and R C is independently hydrogen, halo, unsubstituted C 1 -C 10 alkyl, substituted C 1 -C 10 alkyl, unsubstituted C 5 -C 10 aryl, substituted C 5 -C 10 aryl, or C 5 -C 10 heteroaryl; or R B and R C are each independently selected from hydrogen, unsubstituted C 1-6 alkyl, substituted C 1-6 alkyl, unsubstituted C 2-6 alkenyl, substituted C 2-6 alkenyl, unsubstituted C 2-6 alkynyl, substituted C 2-6 alkynyl, and C 1-6 haloalkyl, where optionally at least one of R B and R C is not hydrogen; or R B and R C are taken together to form a group selected from unsubstituted C 3-6 cycloalkyl, C 3-6 cycloalkenyl, unsubstituted C 6 aryl, and C 3-6 heteroaryl.

28. The compound of claim 27 where R B and R C are methyl; or R B is hydrogen and R C is methyl.

Assignments (2)
CHANGE OF NAME Recorded Sep 23, 2015
From: IDENIX PHARMACEUTICALS, INC.
To: IDENIX PHARMACEUTICALS LLC
Reel/Frame 036666/0853 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 2, 2013
From: PARSY, CHRISTOPHE CLAUDE; ALEXANDRE, FRANCOIS-RENE; DOUSSON, CYRIL B.; DUKHAN, DAVID; PIERRA, CLAIRE; SURLERAUX, DOMINIQUE; MAYES, BENJAMIN ALEXANDER; MOUSSA, ADEL M.; STEWART, ALISTAIR JAMES
To: IDENIX PHARMACEUTICALS, INC.
Reel/Frame 030728/0873 →
Continuity (3)
Provisional Application 61650414 · May 22, 2012
Provisional Application 61695218 · Aug 30, 2012
Related Publication 20130315866A1 · Nov 28, 2013