Pepducin design and use
Disclosed here is the rational design and use of potent and specific GPCR antagonist pepducins based on GPCR regions such as the third intracellular loop and adjacent regions.
1. A chimeric polypeptide comprising:
(a) a first domain comprising SEQ ID NO:20; and
(b) a second domain, attached to said first domain, wherein said second domain comprises a naturally or non-naturally occurring hydrophobic moiety.
2. A pharmaceutical composition comprising:
(a) a chimeric polypeptide comprising a first domain comprising SEQ ID NO:20 and a second domain, attached to said first domain, wherein said second domain comprises a naturally or non-naturally occurring hydrophobic moiety; and
(b) a pharmaceutically-acceptable excipient, carrier, or diluent.
3. A chimeric polypeptide comprising:
(a) a first domain that comprises a mutated full-length or fragment of SEQ ID NO:17, which is a portion of human protease-activated receptor 2 (PAR2), wherein said first domain comprises amino acids 274-284 of human PAR2 (amino acids 8-18 of SEQ ID NO:17), except that said first domain comprises a substitution of arginine (R) at position 284, and optionally an additional substitution at position 274; and
(b) a second domain, attached to said first domain, wherein said second domain comprises a naturally or non-naturally occurring hydrophobic moiety;
wherein said chimeric polypeptide is an effective PAR2 antagonist.
4. The chimeric polypeptide of claim 3 , wherein said substitution of the arginine (R) at position 284 in a human PAR2 is a substitution with another residue having a shorter side chain.
5. The chimeric polypeptide of claim 4 , wherein said residue having a shorter side chain is serine or glutamine.
6. The chimeric polypeptide of claim 3 , wherein said first domain comprises a substitution at position 274.
7. The chimeric polypeptide of claim 3 , wherein said first domain further comprises amino acid 285 of said human PAR2 (amino acid 19 of SEQ ID NO:17).
8. The chimeric polypeptide of claim 7 , wherein said first domain further comprises amino acids 286 and 287 of said human PAR2 (amino acids 20 and 21 of SEQ ID NO:17), except that said first domain optionally comprises a substitution at position 287.
9. The chimeric polypeptide of claim 8 , wherein said first domain comprises a substitution at position 287.
10. The chimeric polypeptide of claim 3 , wherein said first domain further comprises amino acids 270 to 273 of said human PAR2 (amino acids 4-7 of SEQ ID NO:17).
11. The chimeric polypeptide of claim 10 , wherein said first domain further comprises amino acids 267 to 269 of said human PAR2 (amino acids 1-3 of SEQ ID NO:17).
12. The chimeric polypeptide of claim 3 , wherein said first domain comprises amino acids 267-287 of human protease-activated receptor-2 (PAR2), except that said first domain comprises a substitution of arginine (R) at position 284, and optionally an additional substitution at position 274.