IP Library Granted Patent US 9,156,872
Granted Patent B2
US 9,156,872 · App. 14/111,685 · Granted Oct 13, 2015

2′-azido substituted nucleoside derivatives and methods of use thereof for the treatment of viral diseases

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Quick Facts
Patent No.
US 9,156,872
App. No.
14/111,685
Granted
Oct 13, 2015
Kind
B2
Abstract

The present invention relates to 2′-Azido Substituted Nucleoside Derivatives of Formula (I): and pharmaceutically acceptable salts thereof, wherein B, X, R 1 , R 2 and R 3 are as defined herein. The present invention also relates to compositions comprising at least one 2′-Azido Substituted Nucleoside Derivative, and methods of using the 2′-Azido Substituted Nucleoside Derivatives for treating or preventing HCV infection in a patient.

Claims (90)

1. A compound having the structure:

or a pharmaceutically acceptable salt thereof,

wherein:

X is O, S or CH 2 ;

B is a natural or non-natural purine or pyrimidine base, or B is selected from one of the following groups:

Y is N or —C(R 19 )—;

Z is N or CH;

R 1 is H,

R 2 is H or:

or R 1 and R 2 join to form a group having the formula:

R 3 is C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl or C 3 -C 7 cycloalkyl;

R 4 , R 5 , R 7 and R 8 are each independently H, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, halo, —OR 20 , —SR 20 or —N(R 20 ) 2 ;

R 6 , R 9 and R 10 are each independently selected from H, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 7 cycloalkyl, 5- or 6-membered monocyclic heteroaryl, 9- or 10-membered bicyclic heteroaryl, 4 to 7-membered heterocycloalkyl, halo, —OR 20 , —SR 20 , —S(O) 2 R 20 ; —S(O) 2 N(R 20 ) 2 , —NHC(O)OR 20 , —NHC(O)N(R 20 ) 2 , C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —O—(C 1 -C 6 haloalkyl), —CN, —NO 2 , —N(R 20 ) 2 , —NH(C 1 -C 6 alkylene)-(5- or 6-membered monocyclic heteroaryl), —NH(C 1 -C 6 alkylene)-(9- or 10-membered bicyclic heteroaryl), —C(O)R 20 , —C(O)OR 20 , —C(O)N(R 20 ) 2 and —NHC(O)R 20 , wherein said C 2 -C 6 alkenyl group and said C 2 -C 6 alkynyl group can be optionally substituted a halo group;

each occurrence of R 12 is independently selected from H, —(C 1 -C 6 alkylene)-T-R 21 , —(C 1 -C 6 alkylene) m -(C 6 -C 10 aryl), —(C 1 -C 6 alkylene) m -(4 to 7-membered heterocycloalkyl), —(C 1 -C 6 alkylene) m -(4 to 7-membered heterocycloalkenyl), —CH(C 6 -C 10 aryl)-C(O)OR 20 and:

wherein said C 6 -C 10 aryl moiety of said —(C 1 -C 6 alkylene) m -(C 6 -C 10 aryl) group, said 4 to 7-membered heterocycloalkyl moiety of said —(C 1 -C 6 alkylene) m -(4 to 7-membered heterocycloalkyl) group and said 4 to 7-membered heterocycloalkenyl moiety of said —(C 1 -C 6 alkylene) m -(4 to 7-membered heterocycloalkenyl) group can be optionally substituted with up to three groups, each independently selected from C 1 -C 6 alkyl, halo, —OR 20 , C 1 -C 6 haloalkyl, —N(R 20 ) 2 , —C(O)OR 20 , —C(O)N(R 20 ) 2 and —NHC(O)R 20 ;

R 13 is H, —(C 1 -C 6 alkylene)-T-R 21 or —(C 1 -C 6 alkylene) m -(C 6 -C 10 aryl), or R 12 and R 13 can join to form a C 2 -C 4 alkylene group between the oxygen atoms that R 12 and R 13 are attached to, wherein said C 2 -C 4 alkylene group is substituted with at least one C 6 -C 10 aryl group, wherein said C 6 -C 10 aryl moiety of said —(C 1 -C 6 alkylene) m -(C 6 -C 10 aryl) group can be optionally substituted with up to three groups, each independently selected from group can be optionally substituted with up to three groups, each independently selected from C 1 -C 6 alkyl, halo, —OR 20 , C 1 -C 6 haloalkyl, —N(R 20 ) 2 , —C(O)OR 20 , —C(O)N(R 20 ) 2 and —NHC(O)R 20 ;

R 14 is H, C 6 -C 10 aryl, 5- or 6-membered monocyclic heteroaryl or 9- or 10-membered bicyclic heteroaryl, wherein said C 6 -C 10 aryl group, said 5- or 6-membered monocyclic heteroaryl group and said 9- or 10-membered bicyclic heteroaryl group can be optionally substituted with R 22 ;

R 15 is H, C 1 -C 6 alkyl, C 3 -C 7 cycloalkyl, phenyl or benzyl, wherein said C 1 -C 6 alkyl can be optionally substituted with a group selected from halo, —OR 20 , —SR 20 , guanidino, —N(R 20 ) 2 , —C(O)OR 20 , —C(O)N(R 20 ) 2 , —NHC(O)R 20 , 5- or 6-membered monocyclic heteroaryl and 9- or 10-membered bicyclic heteroaryl, and wherein said phenyl group and said benzyl group can be optionally substituted with up to 2 groups, each independently selected from C 1 -C 6 alkyl, halo and —OR 20 ;

R 16 is H, C 1 -C 6 alkyl, C 3 -C 7 cycloalkyl, phenyl or benzyl, wherein said C 1 -C 6 alkyl can be optionally substituted with a group selected from halo, —OR 20 , —SR 20 , guanidino, —N(R 20 ) 2 , —C(O)OR 20 , —C(O)N(R 20 ) 2 , —NHC(O)R 20 , 5- or 6-membered monocyclic heteroaryl and 9- or 10-membered bicyclic heteroaryl, and wherein said phenyl group and said benzyl group can be optionally substituted with up to 2 groups, each independently selected from C 1 -C 6 alkyl, halo and —OR 20 ;

R 17 is H, C 1 -C 20 alkyl, C 2 -C 20 alkenyl, —(C 1 -C 3 alkylene) m -C 3 -C 7 cycloalkyl, —(C 1 -C 3 alkylene) m -C 6 -C 10 aryl or adamantyl, wherein said C 1 -C 20 alkyl group, said C 2 -C 20 alkenyl group, said C 6 -C 10 aryl group and said adamantyl group can be optionally substituted with up to three groups, each independently selected from halo, —OR 20 , —C(O)OR 20 , CN, NO 2 , C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, C 3 -C 7 cycloalkyl, C 6 -C 10 aryl, 5- or 6-membered monocyclic heteroaryl, 9- or 10-membered bicyclic heteroaryl, —N(R 20 ) 2 , —C(O)N(R 20 ) 2 —SR 20 , —S(O)R 20 , —S(O) 2 R 20 , —S(O) 2 N(R 20 ) 2 , —NHC(O)R 20 , —NHC(O)OR 20 and —NHC(O)N(R 20 ) 2 and;

R 18 is H, C 1 -C 6 alkyl, C 3 -C 7 cycloalkyl, —(C 1 -C 3 alkylene) m -C 6 -C 10 aryl, —(C 1 -C 3 alkylene)-C(O)OR 20 , -5- or 6-membered monocyclic heteroaryl, 9- or 10-membered bicyclic heteroaryl, 4 to 7-membered heterocycloalkyl or:

wherein said C 6 -C 10 aryl group, said 5- or 6-membered monocyclic heteroaryl group and said 9- or 10-membered bicyclic heteroaryl group can be optionally substituted with up to five groups, each independently selected from C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, halo, —OR 20 , —SR 20 , C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —O—(C 1 -C 6 haloalkyl), —CN, —NO 2 , —N(R 20 ) 2 , —C(O)OR 20 , —C(O)N(R 20 ) 2 and —NHC(O)R 20 ;

R 19 is H, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, halo, —OR 20 , —SR 20 , N(R 20 ) 2 , C 3 -C 7 cycloalkyl, C 6 -C 10 aryl, 5- or 6-membered monocyclic heteroaryl or 9- or 10-membered bicyclic heteroaryl;

each occurrence of R 20 is independently H, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —(C 1 -C 3 alkylene) m -(C 3 -C 7 cycloalkyl), —(C 1 -C 3 alkylene) m -(C 6 -C 10 aryl), —(C 1 -C 3 alkylene) m -(4 to 7-membered heterocycloalkyl), —(C 1 -C 3 alkylene) m -(5- or 6-membered monocyclic heteroaryl) or —(C 1 -C 3 alkylene) m -(9- or 10-membered bicyclic heteroaryl), wherein said C 3 -C 7 cycloalkyl group, said C 6 -C 10 aryl group, said 4 to 7-membered heterocycloalkyl group, said -(5- or 6-membered monocyclic heteroaryl group or said 9- or 10-membered bicyclic heteroaryl group can be optionally substituted with R 26 ;

each occurrence of R 21 is independently H, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 7 cycloalkyl, C 3 -C 7 cycloalkenyl, 5- or 6-membered monocyclic heteroaryl, 9- or 10-membered bicyclic heteroaryl, —OR 20 , —O—(C 1 -C 6 haloalkyl) or —N(R 20 ) 2 , wherein said C 2 -C 6 alkenyl group, said C 2 -C 6 alkynyl group, said C 3 -C 7 cycloalkyl group, said C 3 -C 7 cycloalkenyl group, said C 6 -C 10 aryl group, said 5- or 6-membered monocyclic heteroaryl group and said 9- or 10-membered bicyclic heteroaryl group can be optionally substituted with up to five groups, each independently selected from C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, halo, —OR 20 , —SR 20 , C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —O—(C 1 -C 6 haloalkyl), —CN, —NO 2 , —N(R 20 ) 2 , —C(O)R 20 , —C(O)OR 20 , —C(O)N(R 20 ) 2 and —NHC(O)R 20 ;

R 22 represents from one to five substituent groups, each independently selected from C 1 -C 6 alkyl, halo, —OR 20 , —SR 20 , C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —O—(C 1 -C 6 haloalkyl), —CN, —NO 2 , —N(R 20 ) 2 , —C(O)OR 20 , —C(O)N(R 20 ) 2 and —NHC(O)R 20 , or any two R 22 groups on adjacent ring carbon atoms can combine to form —O—R 23 —O—;

R 23 is ˜[C(R 24 ) 2 ] n —;

each occurrence of R 24 is independently H or C 1 -C 6 alkyl;

each occurrence of R 25 is independently selected from H, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 7 cycloalkyl, —(C 1 -C 3 alkylene) m -(C 6 -C 10 aryl), —(C 1 -C 6 alkylene)-C(O)—(C 1 -C 6 alkyl), —(C 1 -C 6 alkylene)-C(O)O(C 1 -C 6 alkyl), 4 to 7-membered heterocycloalkyl, 5- or 6-membered monocyclic heteroaryl and 9- or 10-membered bicyclic heteroaryl, wherein said C 1 -C 6 alkyl group, said C 2 -C 6 alkenyl group, said C 2 -C 6 alkynyl group, said C 3 -C 7 cycloalkyl group, said C 6 -C 10 aryl group, said 4 to 7-membered heterocycloalkyl group, said -(5- or 6-membered monocyclic heteroaryl group or said 9- or 10-membered bicyclic heteroaryl group can be optionally substituted with R 26 ; or two R 25 groups, together with the common nitrogen atom to which they are attached, join to form a 4- to 7-membered heterocycloalkyl group;

R 26 represents from one to five substituent groups, each independently selected from C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, halo, —OR 27 , —SR 27 , C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —O(C 1 -C 6 haloalkyl), —CN, —NO 2 , —N(R 27 ) 2 , —C(O)OR 27 , —C(O)N(R 27 ) 2 and —NHC(O)R 27 ;

each occurrence of R 27 is independently H, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —(C 1 -C 3 alkylene) m -(C 3 -C 7 cycloalkyl), —(C 1 -C 3 alkylene) m -(C 6 -C 1 ° aryl), —(C 1 -C 3 alkylene) m -(4 to 7-membered heterocycloalkyl), —(C 1 -C 3 alkylene) m -(5- or 6-membered monocyclic heteroaryl) or —(C 1 -C 3 alkylene) m -(9- or 10-membered bicyclic heteroaryl);

R 28 is H, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 7 cycloalkyl, C 3 -C 7 cycloalkenyl, 5- or 6-membered monocyclic heteroaryl, 9- or 10-membered bicyclic heteroaryl, —OR 20 , —O—(C 1 -C 6 haloalkyl) or —N(R 20 ) 2 , wherein said C 2 -C 6 alkenyl group, said C 2 -C 6 alkynyl group, said C 3 -C 7 cycloalkyl group, said C 3 -C 7 cycloalkenyl group, said C 6 -C 10 aryl group, said 5- or 6-membered monocyclic heteroaryl group and said 9- or 10-membered bicyclic heteroaryl group can be optionally substituted with up to five groups, each independently selected from C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, halo, —OR 20 , —SR 20 , C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —O—(C 1 -C 6 haloalkyl), —CN, —NO 2 , —N(R 20 ) 2 , —C(O)R 20 , —C(O)OR 20 , —C(O)N(R 20 ) 2 and —NHC(O)R 20 ;

each occurrence of R 29 is independently H, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 hydroxyalkyl, —(C 1 -C 3 alkylene) m -(C 3 -C 7 cycloalkyl), —(C 1 -C 3 alkylene) m -(C 6 -C 10 aryl), —(C 1 -C 3 alkylene) m -(4 to 7-membered heterocycloalkyl), —(C 1 -C 3 alkylene) m -(5- or 6-membered monocyclic heteroaryl) or —(C 1 -C 3 alkylene) m -(9- or 10-membered bicyclic heteroaryl), wherein said C 3 -C 7 cycloalkyl group, said C 6 -C 10 aryl group, said 4 to 7-membered heterocycloalkyl group, said -(5- or 6-membered monocyclic heteroaryl group or said 9- or 10-membered bicyclic heteroaryl group can be optionally substituted with R 26 ;

each occurrence of T is independently —S—, —O—, —SC(O)—, —SC(S)—, —OC(O)— and —OC(S)—;

each occurrence of m is independently 0 or 1; and

each occurrence of n is independently 1 or 2.

2. The compound of claim 1 , wherein X is O.

3. The compound of claim 1 , wherein B is:

R 6 and R 10 are each independently —NH 2 or —NHC(O)CH 3 ; and R 9 is —OH or —O—(C 1 -C 6 alkyl).

4. The compound of claim 1 , wherein R 3 is methyl.

5. The compound of claim 1 having the formula:

or a pharmaceutically acceptable salt thereof,

wherein:

B is:

R 1 is H,

R 2 is H, or R 1 and R 2 join to form a group having the formula:

R 6 and R 10 are each independently —N(R 20 ) 2 ;

R 9 is —OH or —O—(C 1 -C 6 alkyl);

R 14 is C 6 -C 10 aryl, which can be optionally substituted with a halo group;

R 15 and R 16 are each independently H or C 1 -C 6 alkyl;

R 17 is C 1 -C 6 alkyl;

R 18 is C 1 -C 6 alkyl, C 3 -C 7 cycloalkyl or C 6 -C 10 aryl; and

each occurrence of R 20 is independently H or —C(O)—(C 1 -C 6 alkyl).

6. The compound of claim 1 having the formula:

or a pharmaceutically acceptable salt thereof,

wherein:

B is:

R 1 is:

R 9 is —OH or —O—(C 1 -C 6 alkyl);

R 14 is phenyl, which can be optionally substituted with up to 2 halo groups, which can be the same or different; and

R 17 is C 1 -C 6 alkyl.

7. The compound of claim 1 having the formula:

or a pharmaceutically acceptable salt thereof,

wherein:

B is:

R 9 is —OH or —O—(C 1 -C 6 alkyl); and

R 18 is aryl or C 1 -C 6 alkyl.

8. The compound of claim 1 having the formula:

or a pharmaceutically acceptable salt thereof,

wherein:

B is:

R 1 is:

and R 9 is —OH or —O—(C 1 -C 6 alkyl).

9. The compound of claim 1 , wherein B is:

10. The compound of claim 1 , wherein R 1 is H or

or R 1 and R 2 join to form a group having the formula:

wherein R 14 is C 6 -C 10 aryl, which can be optionally substituted as set forth in claim 1 ; R 17 is C 1 -C 6 alkyl; and R 18 is C 1 -C 6 alkyl, C 3 -C 7 cycloalkyl or C 6 -C 10 aryl.

11. The compound of claim 1 , wherein R 1 is

wherein R 14 is naphthyl or phenyl, which can be optionally substituted with F or Cl; and R 17 is methyl, ethyl, isopropyl, n-butyl or neopentyl.

12. The compound of claim 7 , wherein R 18 is C 1 -C 6 alkyl.

13. The compound of claim 1 , wherein R 1 and R 2 join to form a group having the formula:

14. The compound of claim 1 being one of the compounds numbered 1-780 in the above specification, or a pharmaceutically acceptable salt thereof.

15. The compound of claim 1 having the structure:

or a pharmaceutically acceptable salt thereof.

16. A pharmaceutical composition comprising an effective amount of the compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.

17. The pharmaceutical composition according to claim 16 , further comprising a second therapeutic agent selected from the group consisting of HCV antiviral agents, immunomodulators, and anti-infective agents.

18. The pharmaceutical composition according to claim 17 , further comprising a third therapeutic agent selected from the group consisting of HCV protease inhibitors, HCV NS5A inhibitors and HCV NS5B polymerase inhibitors.

19. A method of treating a patient infected with HCV comprising the step of administering an amount of the compound according to claim 1 , or a pharmaceutically acceptable salt thereof, effective to treat infection by HCV in said patient.

20. The method according to claim 19 , further comprising the step of administering pegylated-interferon alpha and an HCV protease inhibitor to said patient.

21. The method according to claim 19 , further comprising the step of administering ribavirin to said patient.

Assignments (2)
MERGER Recorded Aug 8, 2022
From: MERCK SHARP & DOHME CORP.
To: MERCK SHARP & DOHME LLC
Reel/Frame 061102/0145 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 15, 2014
From: GIRIJAVALLABHAN, VINAY; NJOROGE, F GEORGE; BOGEN, STEPHANE; KEREKES, ANGELA; BENNETT, FRANK; HUANG, YING; NAIR, LATHA; PISSARNITSKI, DMITRI; VERMA, VISHAL; DANG, QUN; DAVIES, IAN; OLSEN, DAVID B.; STAMFORD, ANDREW; VACCA, JOSEPH P.; ARASAPPAN, ASHOK; CHEN, KEVIN X.
To: MERCK SHARP & DOHME CORP.
Reel/Frame 032670/0924 →