Method for detecting the presence of carbapenemase-producing bacteria in a sample
The present invention relates to a method for detecting the presence of carbapenemase-producing bacteria in a sample, said method comprising the steps of: a) performing cell lysis on a test sample in order to obtain an enzymatic suspension; b) reacting a fraction of the enzymatic suspension obtained in step a) with a reagent kit, said reagent kit comprising —a carbapenemase substrate selected from the group consisting of carbapenems and cephamycins, —a pH color indicator which will change color when the pH of the reaction mixture is comprised between 6.4 and 8.4, wherein a color change after step b) indicates the presence of carbapenemase-producing bacteria in the test sample. The invention also relates to a reagent kit, to a microtiter plate and to their uses in detecting the presence of carbapenemase producers in a test sample.
1. A method for detecting the presence of carbapenemase-producing bacteria in a sample, said method comprising the steps of:
a) performing cell lysis on a test sample in order to obtain an enzymatic suspension, wherein the cells in the test sample are not cultured in the presence of a carbapene and a pH indicator prior to step a);
b) reacting a fraction of the enzymatic suspension obtained in step a) with
a carbapenemase substrate selected from the group consisting of carbapenems and cephamycins, and
a pH color indicator which will change color when the pH of the reaction mixture ranges from 6.4 to 8.4,
wherein a color change after step b) indicates the presence of carbapenemase-producing bacteria in the test sample.
2. The method according to claim 1 , wherein the test sample is a biological sample selected from the group consisting of a blood sample and a urine sample.
3. The method according to claim 1 , wherein the carbapenemase-producing bacteria are of a genus selected from the group consisting of Acinetobacter, Aeromonas, Bacillus, Bacteroides, Citrobacter, Enterobacter, Escherichia, Klebsiella, Morganella, Pandoreae, Proteus, Providencia, Pseudomonas, Ralstonia, Raoultella, Salmonella, Serratia, Shewanella, Shigella and Stenotrophomonas.
4. The method according to claim 1 , wherein the step of reacting b) is carried out in the presence of a carbapenemase activator selected from the group consisting of divalent cations, salts of divalent cations and mixtures of divalent cations and salts of divalent cations.
5. The method according to claim 1 , wherein said step of reacting b) is carried out at a temperature ranges from 15° C. to 40° C.
6. The method according to claim 1 , wherein the step of reacting b) is carried out over a period of time sufficient to observe a color change.
7. The method according to claim 1 ,
wherein
the carbapenemase substrate is imipenem, and
the pH color indicator is phenol red,
wherein the step of reacting b) is carried out in the presence of a carbapenemase activator which is zinc or salt a thereof,
wherein a color change from red to yellow after step b) indicates the presence of carbapenemase-producing bacteria in the biological sample.
8. The method of claim 5 , wherein the step of reacting b) is carried out at a temperature between 20° C. and 37° C. or at a temperature ranging from 35° C. to 37° C.
9. The method of claim 6 , wherein the step of reacting b) is carried out over a period of time selected from the group consisting of: 5 to 120 minutes, 10 to 60 minutes, and 20 to 40 minutes.
10. The method of claim 1 , wherein the carbapenem is selected from the group consisting of biapenem, ertapenem, doripenem, imipenem, meropenem, tebipenem and panipenem and the cephamycin is selected from the group consisting of moxalactam and cefoxitin.
11. The method of claim 1 , wherein said method is carried out using a microtiter plate comprising a well or a series of wells comprising a carbapenemase substrate selected from the group consisting of carbapenems and cephamycins, and wherein said step of reacting b) includes the steps of
adding the pH color indicator to the well or series of wells, and
adding the fraction of the enzymatic suspension to the well or series of wells.
12. The method of claim 1 , wherein said method is carried out using a reagent kit comprising a carbapenemase substrate selected from the group consisting of carbapenems and cephamycins and a pH color indicator.
13. A method for detecting the presence of carbapenemase-producing bacteria in a sample, said method comprising the steps of:
a) performing cell lysis on a test sample in order to obtain an enzymatic suspension, wherein the cells in the test sample are not cultured in the presence of a carbapenem and a pH indicator prior to step a);
b) reacting a fraction of the enzymatic suspension obtained in step a) with
imipenem, and
a pH color indicator which will change color when the pH of the reaction mixture ranges from 6.4 to 8.4,
wherein a color change after step b) indicates the presence of carbapenemase-producing bacteria in the test sample.