IP Library Granted Patent US 9,504,688
Granted Patent B2
US 9,504,688 · App. 14/397,798 · Granted Nov 29, 2016

Methods and compositions for treating bacterial infection

Inventors: David Ginsburg (Ann Arbor, MI); Scott D. Larsen (South Lyon, MI); Bryan Yestrepsky (Ann Arbor, MI); Hongmin Sun (Columbia, MO)
Assignees: THE REGENTS OF THE UNIVERSITY OF MICHIGAN; THE CURATORS OF THE UNIVERSITY OF MISSOURI
A61K31/517A01N43/54A01N43/84A01N43/90A61K31/505A61K31/5377A61K45/06A61L31/08A61L31/16C07D239/56C07D239/70C07D471/10C07D487/10C07D491/107A61L2300/404
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Quick Facts
Patent No.
US 9,504,688
App. No.
14/397,798
Granted
Nov 29, 2016
Kind
B2
Abstract

The present invention relates to chemical compounds, methods for their discovery, and their therapeutic and research use. In particular, the present invention provides compounds as therapeutic agents against bacterial infections (e.g., biofilms).

Claims (44)

1. A pharmaceutical composition, comprising:

a compound selected from the group consisting of a)

Wherein X is S, NH, or O, R 1 and R 2 are, independently, selected from the group consisting of a C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl, wherein said C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl are optionally substituted with F, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl or heteroaryl, wherein one or more alkyl carbons may be replaced by O;

R 3 and R 4 are joined in a cycloalkyl ring of 3-7 carbons wherein at least one ring CH 2 is replaced by 0 or N-G;

G is selected from the group consisting of H, C(═O)R 6 , SO 2 R 6 and C(═O)OR 6 ;

R 5 is selected from the group consisting of H, C1-C6 alkyl, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl, heteroaryl, SO 2 R 6 , NHCOR 6 , SO 2 NHR 6 , and OCOR 6 ;

R 6 is selected from the group consisting of H, C1-C6 alkyl, C0-C3 alkyl-aryl, and C0-C3 alkyl-heteroaryl, all optionally substituted; and

R 11 is H or a C1 alkyl;

b) a compound having the structure

Wherein X is S, R 1 is a C-C8 alkyl substituted with at least one F, R 2 is selected from the group consisting of a C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl, wherein said C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl are optionally substituted with F, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl or heteroaryl, wherein one or more alkyl carbons may be replaced by O;

R 3 and R 4 are independently a C1-C8 alkyl, H, or joined in a cycloalkyl ring of 3-7 carbons wherein at least one ring CH 2 is replaced by O or N-G;

G is selected from the group consisting of H, C(═O)R 6 , SO 2 R 6 and C(═O)OR 6 ;

R 5 is selected from the group consisting of H, C1-C6 alkyl, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl, heteroaryl, SO 2 R 6 , NHCOR 6 , SO 2 NHR 6 , and OCOR 6 ;

R 6 is selected from the group consisting of H, C1-C6 alkyl, C0-C3 alkyl-aryl, and C0-C3 alkyl-heteroaryl, all optionally substituted; and

R 11 is H or a C1 alkyl; and

c) a compound having the structure:

Wherein R 1 and R 2 are, independently, selected from the group consisting of a C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl, wherein said C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl are optionally substituted with F, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl or heteroaryl, wherein one or more alkyl carbons may be replaced by O;

R 5 is selected from the group consisting of H, C1-C6 alkyl, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl, heteroaryl, SO 2 R 6 , NHCOR 6 , SO 2 NHR 6 , and OCOR 6 ;

R 6 is selected from the group consisting of H, C1-C6 alkyl, C0-C3 alkyl-aryl, and C0-C3 alkyl-heteroaryl, all optionally substituted;

R 7 and R 8 are independently selected from the group consisting of H, C1-C6 alkyl, and joined in a cycloalkyl ring of 3-7 carbons, wherein one of the ring CH 2 groups may be replaced by O or N-G;

R 9 is a C1-C5 alkyl; and

R 10 is a C2-C8 alkyl or alkenyl or cycloalkyl, optionally substituted with F, CN, OR 6 , NR 6 2 , CO 2 R 6 , CONHR 6 , aryl or heteroaryl, wherein one or more alkyl carbons may be replaced by O.

2. The composition of claim 1 , wherein said compound is selected from the group consisting of:

3. The composition of claim 1 , further comprising a pharmaceutically acceptable carrier.

4. The composition of claim 1 , wherein said composition inhibits growth or biological activity of S. aureus and/or S. epidermidis.

5. The composition of claim 1 , wherein said composition inhibits biofilm formation by S. aureus and/or S. epidermidis.

6. The composition of claim 4 , wherein said S. aureus and/or S. epidermidis are in a biofilm.

7. The composition of claim 1 , wherein said composition further comprises a known antibiotic compound.

8. A method of inhibiting the growth or biological activity of S. aureus and/or S. epidermidis , comprising contacting said S. aureus and/or S. epidermidis with a compound having the structure of Formula I, II, III or IV

Wherein X is S, NH, or O, R 1 and R 2 are, independently, selected from the group consisting of a C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl, wherein said C1-C8 alkyl, a C1-C8 alkenyl, and a C1-C8 cycloalkyl are optionally substituted with F, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl or heteroaryl, wherein one or more alkyl carbons may be replaced by O;

R 3 and R 4 are independently H, a C1-C8 alkyl, or joined in a cycloalkyl ring of 3-7 carbons wherein at least one ring CH 2 is replaced by O or N-G;

G is selected from the group consisting of H, C(═O)R 6 , SO 2 R 6 and C(═O)OR 6 ;

R 5 is selected from the group consisting of H, C1-C6 alkyl, CN, OR 6 , NR 6 2 , COR 6 , CO 2 R 6 , CONHR 6 , aryl, heteroaryl, SO 2 R 6 , NHCOR 6 , SO 2 NHR 6 , and OCOR 6 ;

R 6 is selected from the group consisting of H, C1-C6 alkyl, C0-C3 alkyl-aryl, and C0-C3 alkyl-heteroaryl, all optionally substituted;

R 7 and R 8 are independently selected from the group consisting of H, C1-C6 alkyl, and joined in a cycloalkyl ring of 3-7 carbons, wherein one of the ring CH 2 groups may be replaced by O or N-G;

R 9 is a C1-C5 alkyl;

R 10 is a C2-C8 alkyl or alkenyl or cycloalkyl, optionally substituted with F, CN, OR 6 , NR 6 2 , CO 2 R 6 , CONHR 6 , aryl or heteroaryl, wherein one or more alkyl carbons may be replaced by O; and

R 11 is H or a C1 alkyl,

wherein said compound inhibits the growth or biological activity of said S. aureus and/or S. epidermidis.

9. The method of claim 8 , wherein said S. aureus and/or S. epidermidis are present in a biofilm.

10. The method of claim 9 , wherein said compound prevents biofilm formation by said S. aureus and/or S. epidermidis.

11. The method of claim 8 , further comprising the step of contacting said S. aureus and/or S. epidermidis with a known antibiotic compound.

12. A surface coated in a compound of claim 1 .

13. The surface of claim 12 , wherein said surface is a surface of a medical device.

Assignments (5)
CONFIRMATORY LICENSE Recorded Jun 17, 2021
From: UNIVERSITY OF MICHIGAN
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 056575/0510 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 26, 2015
From: HOWARD HUGHES MEDICAL INSTITUTE ("HHMI")
To: THE REGENTS OF THE UNIVERSITY OF MICHIGAN
Reel/Frame 034807/0907 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 23, 2015
From: LARSEN, SCOTT D.; YESTREPSKY, BRYAN
To: THE REGENTS OF THE UNIVERSITY OF MICHIGAN
Reel/Frame 034795/0648 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 23, 2015
From: GINSBURG, DAVID
To: HOWARD HUGHES MEDICAL INSTITUTE ("HHMI")
Reel/Frame 034795/0663 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 23, 2015
From: SUN, HONGMIN
To: THE CURATORS OF THE UNIVERSITY OF MISSOURI
Reel/Frame 034795/0667 →
Continuity (2)
Provisional Application 61641590 · May 2, 2012
Related Publication 20150132352A1 · May 14, 2015