IP Library Granted Patent US 9,695,133
Granted Patent B2
US 9,695,133 · App. 14/414,669 · Granted Jul 4, 2017

Quinazolinone-based oncogenic-RAS-selective lethal compounds and their use

Inventors: Brent R Stockwell (New York, NY); Matthew Welsch (New York, NY); Wan Seok Yang (New York, NY)
Assignee: The Trustees of Columbia University in the City of New York
C07D239/91C07D213/61C07D403/06
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Quick Facts
Patent No.
US 9,695,133
App. No.
14/414,669
Granted
Jul 4, 2017
Kind
B2
Abstract

The present invention provides, inter alia, compounds having the structure (1) compositions containing such compounds are also provided. Methods for using such compounds or compositions for treating or ameliorating the effects of a cancer having a cell that harbors an oncogenic RAS mutation, for modulating a lipoxygenase in a ferroptosis cell death pathway, and for depleting reduced glutathione (GSH) in a cell harboring an oncogenic RAS mutation are further provided.

Claims (122)

1. A compound having the structure (1):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen;

R 2 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, C 3-8 cycloalkyl, C 3-8 heterocycloalkyl, aryl, heteroaryl, C 1-4 aralkyl;

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

with the proviso that when X is C, n=0, and R 3 is nothing, R 1 cannot be H when R 2 is CH 3 ,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

2. The compound according to claim 1 having the structure (10):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen;

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

3. The compound according to claim 1 having the structure (20):

wherein

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

4. The compound according to claim 1 , which is selected from the group consisting of:

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

5. A compound having the structure (30):

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

6. A composition comprising a pharmaceutically acceptable carrier and a compound having the structure (1):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen;

R 2 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, C 3-8 cycloalkyl, C 3-8 heterocycloalkyl, aryl, heteroaryl, C 1-4 aralkyl;

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

with the proviso that when X is C, n=0, and R 3 is nothing, R 1 cannot be H when R 2 is CH 3 ,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

7. A composition according to claim 6 , wherein the compound has the structure (10):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

8. A composition according to claim 6 , wherein the compound has the structure (20):

wherein

R 3 is selected from the group consisting nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

9. A composition according to claim 6 , wherein the compound is selected from the group consisting of:

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

10. A composition comprising a pharmaceutically acceptable carrier and a compound having the structure (30):

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

11. A method for modulating a lipoxygenase in a ferroptosis cell death pathway comprising administering to a cell an effective amount of a compound having the structure (1):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen;

R 2 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, C 3-8 cycloalkyl, C 3-8 heterocycloalkyl, aryl, heteroaryl, C 1-4 aralkyl;

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

with the proviso that when X is C, n=0, and R 3 is nothing, R 1 cannot be H when R 2 is CH 3 ,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

12. The method according to claim 11 , wherein the compound has the structure (10):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

13. The method according to claim 11 , wherein the compound has the structure (20):

wherein

R 3 is selected from the group consisting nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

14. The method according to claim 11 , wherein the compound is selected from the group consisting of:

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

15. The method according to claim 11 , wherein the compound has the structure (30):

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

16. The method according to claim 11 , wherein the modulation comprises activation of one or more polypeptides encoded by ALOX genes.

17. A method for depleting reduced glutathione (GSH) in a cell harboring an oncogenic RAS mutation comprising administering to the cell an effective amount of a compound having the structure (1):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen;

R 2 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, C 3-8 cycloalkyl, C 3-8 heterocycloalkyl, aryl, heteroaryl, C 1-4 aralkyl;

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

with the proviso that when X is C, n=0, and R 3 is nothing, R 1 cannot be H when R 2 is CH 3 ,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

18. A compound having the structure (100):

wherein

R 1 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, hydroxy, and halogen;

R 2 is selected from the group consisting of H, C 1-4 alkyl, C 1-4 alkoxy, C 3-8 cycloalkyl, C 3-8 heterocycloalkyl, aryl, heteroaryl, C 1-4 aralkyl;

R 3 is selected from the group consisting of nothing, H, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

R 4 and R 5 are independently selected from the group consisting of H, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

R 6 is selected from the group consisting of H, —NH 2 , C 1-4 alkyl, C 1-4 alkoxy, carbonyl, aryl, heteraryl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

with the proviso that when X is C, n=0, and R 3 is nothing, R 1 cannot be H when R 2 is CH 3 ,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

19. The compound according to claim 18 having the structure (200):

wherein

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

R 6 is selected from the group consisting of H, —NH 2 , C 1-4 alkyl, C 1-4 alkoxy, carbonyl, aryl, heteraryl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

X is selected from the group consisting of C, N, and O; and

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

20. The compound according to claim 18 having the structure (300):

wherein

R 3 is selected from the group consisting of nothing, C 1-4 alkyl, C 1-4 alkoxy, carbonyl, C 3-8 cycloalkyl, and C 3-8 heterocycloalkyl;

n is an integer from 0-6,

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

21. The compound according to claim 18 , which is selected from the group consisting of:

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

22. A composition comprising a pharmaceutically acceptable carrier and a compound according to claim 18 .

23. A method for modulating a lipoxygenase in a ferroptosis cell death pathway comprising administering to a cell an effective amount of a compound according to claim 18 .

24. The method according to claim 23 , wherein the modulation comprises activation of one or more polypeptides encoded by ALOX genes.

25. A method for modulating a lipoxygenase in a ferroptosis cell death pathway comprising administering to a cell an effective amount of a compound selected from the group consisting of:

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

26. The method according to claim 25 , wherein the modulation comprises activation of one or more polypeptides encoded by ALOX genes.

27. A method for depleting reduced glutathione (GSH) in a cell harboring an oncogenic RAS mutation comprising administering to the cell an effective amount of a compound according to claim 18 .

28. A method for depleting reduced glutathione (GSH) in a cell harboring an oncogenic RAS mutation comprising administering to the cell an effective amount of a compound selected from the group consisting of:

or an N-oxide, crystalline form, hydrate, or pharmaceutically acceptable salt thereof.

Assignments (2)
CONFIRMATORY LICENSE Recorded Jun 19, 2015
From: COLUMBIA UNIV NEW YORK MORNINGSIDE
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 035978/0473 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 13, 2015
From: STOCKWELL, BRENT R.; WELSCH, MATTHEW; YANG, WAN SEOK
To: THE TRUSTEES OF COLUMBIA UNIVERSITY IN THE CITY OF NEW YORK
Reel/Frame 035627/0283 →
Continuity (2)
Provisional Application 61671602 · Jul 13, 2012
Related Publication 20150175558A1 · Jun 25, 2015