IP Library Granted Patent US 9,815,784
Granted Patent B2
US 9,815,784 · App. 14/526,462 · Granted Nov 14, 2017

CC-1065 analogs and their conjugates

Inventors: Patrick Henry Beusker (Nijmegen, NL); Rudy Gerardus Elisabeth Coumans (Nijmegen, NL); Ronald Christiaan Elgersma (Nijmegen, NL); Wiro Michael Petrus Bernardus Menge (Nijmegen, NL); Johannes Albertus Frederikus Joosten (Nijmegen, NL); Henri Johannes Spijker (Nijmegen, NL); Franciscus Marinus Hendrikus de Groot (Nijmegen, NL)
Assignee: Syntarga B.V.
C07D209/60A61K31/404A61K31/4184A61K31/423A61K31/428A61K31/437A61K31/4355A61K31/4365A61K47/48384C07D403/06C07D403/14C07D413/06C07D417/06C07D471/04C07D491/048C07D495/04
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Quick Facts
Patent No.
US 9,815,784
App. No.
14/526,462
Granted
Nov 14, 2017
Kind
B2
Abstract

This invention relates to novel analogs of the DNA-alkylating agent CC-1065 and to their conjugates. Furthermore this invention concerns intermediates for the preparation of said agents and conjugates. The conjugates are designed to release their (multiple) payload after one or more activation steps and/or at a rate and time span controlled by the conjugate in order to selectively deliver and/or controllably release one or more of said DNA alkylating agents. The agents, conjugates, and intermediates can be used to treat an illness that is characterized by undesired (cell) proliferation. As an example, the agents and the conjugates of this invention may be used to treat a tumor.

Claims (50)

1. A compound of formula (III):

or a pharmaceutically acceptable salt thereof, wherein

V 2 is a full-length antibody or an antigen-binding fragment thereof;

each L 2 is independently absent or a linking group linking V 2 to L;

each L is independently absent or a linking group linking L 2 to one or more V 1 and/or Y;

each V 1 is a conditionally-cleavable or conditionally-transformable moiety, which can be cleaved or transformed by a chemical, photochemical, physical, biological, or enzymatic process;

each Y is independently absent or a self-eliminating spacer system which is comprised of 1 or more self-elimination spacers and is linked to V 1 , optionally L, and one or more Z;

each p and q are numbers representing a degree of branching and are each independently a positive integer;

z is a positive integer equal to or smaller than the total number of attachment sites for Z;

each Z is a compound of formula (I)

or a pharmaceutically acceptable salt thereof, wherein

R 1 is a leaving group, which is Cl;

R 2 , R 2′ , R 4 , R 4′ , R 12 , and R 19 are each H;

X 2 is C(R 14 )(R 14′ ), wherein R 14 has the same meaning as defined for R 7 and R 14′ and R 7′ are absent resulting in a double bond between the atoms designated to bear R 7′ and R 14′ ;

R 5 , R 6 , and R 7 are independently selected from the group consisting of H, OH, SH, NH 2 , N 3 , NO 2 , NO, CF 3 , CN, C(O)NH 2 , C(O)H, C(O)OH, halogen, R e , SR e , S(O)R e , S(O) 2 R e , S(O)OR e , S(O) 2 OR e , OS(O)R e , OS(O) 2 R e , OS(O)OR e , OS(O) 2 OR e , OR e , NHR e , N(R e )R f , + N(R e )(R f )R g , P(O)(OR e )(OR f ), OP(O)(OR e )(OR f ), SiR e R f R g , C(O)R e , C(O)OR e , C(O)N(R e )R f , OC(O)R e , OC(O)OR e , OC(O)N(R e )R f , N(R e )C(O)R f , N(R e )C(O)OR f , N(R e )C(O)N(R f )R g , and a water-soluble group, wherein

R e , R f , and R g are independently selected from H and optionally substituted (CH 2 CH 2 O) ee CH 2 CH 2 X 13 R e1 , C 1-15 alkyl, C 1-15 heteroalkyl, C 3-15 cycloalkyl, C 1-15 heterocycloalkyl, C 5-15 aryl, or C 1-15 heteroaryl, wherein ee is selected from 1 to 1000, X 13 is selected from O, S, and NR f1 , and R f1 and R e1 are independently selected from H and C 1-3 alkyl, one or more of the optional substituents in R e , R f , and/or R g optionally being a water-soluble group, two or more of R e , R f , and R g optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles,

R 5′ +R 6′ are absent, resulting in a double bond between the atoms designated to bear R 5′ and R 6′ ;

X 1 is O;

wherein DB is selected from:

R 8 , R 9 , R 10 , R 11 , R 15 , and R 16 are each independently selected from the group consisting of H, OH, SH, NH 2 , N 3 , NO 2 , NO, CF 3 , CN, C(O)NH 2 , C(O)H, C(O)OH, halogen, R h , SR h , S(O)R h , S(O) 2 R h , S(O)OR h , S(O) 2 OR h , OS(O)R h , OS(O) 2 R h , OS(O)OR h , OS(O) 2 OR h , OR h , NHR h , N(R h )R i , + N(R h )(R i )R j , P(O)(OR h )(OR i ), OP(O)(OR h )(OR i ), SiR h R i R j , C(O)R h , C(O)OR h , C(O)N(R h )R i , OC(O)R h , OC(O)OR h , OC(O)N(R h )R i , N(R h )C(O)R i , N(R h )C(O)OR i , N(R h )C(O)N(R i )R j , and a water-soluble group, wherein

R h , R i , and R j are independently selected from H and optionally substituted (CH 2 CH 2 O) ee CH 2 CH 2 X 13 R e1 , C 1-15 alkyl, C 1-15 heteroalkyl, C 3-15 cycloalkyl, C 1-15 heterocycloalkyl, C 5-15 aryl, or C 1-15 heteroaryl, one or more of the optional substituents in R h , R i , and/or R j optionally being a water-soluble group, two or more of R h , R i , and R j optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles,

a is 0 and b is 1;

wherein for each group that is optionally substituted, the substituent, when present, is selected from the group consisting of OH, ═O, ═S, ═NR k , ═N—OR k , SH, NH 2 , NO 2 , NO, N 3 , CF 3 , CN, OCN, SCN, NCO, NCS, C(O)NH 2 , C(O)H, C(O)OH, halogen, R k , SR k , S(O)R k , S(O)OR k , S(O) 2 R k , S(O) 2 OR k , OS(O)R k , OS(O)OR k , OS(O) 2 R k , OS(O) 2 OR k , S(O)N(R k )R l , OS(O)N(R k )R l , S(O) 2 N(R k )R l , OS(O) 2 N(R k )R l , OP(O)(OR k )(OR l ), P(O)(OR k )(OR l ), OR k , NHR k , N(R k )R l , + N(R k )(R l )R m , Si(R k )(R l )(R m ), C(O)R k , C(O)OR k , C(O)N(R k )R l , OC(O)R k , OC(O)OR k , OC(O)N(R k )R l , N(R k )C(O)R l , N(R k )C(O)OR l , N(R k )C(O)N(R l )R m , a water-soluble group, and the thio derivatives of these substituents, and protonated, charged, and deprotonated forms of any of these substituents, wherein R k , R l , and R m are independently selected from H and optionally substituted —(CH 2 CH 2 O) yy CH 2 CH 2 X 17 R yy , C 1-15 alkyl, C 1-15 heteroalkyl, C 3-15 cycloalkyl, C 1-15 heterocycloalkyl, C 5-15 aryl, or C 1-15 heteroaryl, or a combination thereof, wherein yy is selected from 1 to 1000, X 17 is independently selected from O, S, and NR zz , and R zz and R yy are independently selected from H and C 1-3 alkyl, two or more of R k , R l , and R m optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles,

wherein the water-soluble group is selected from the group consisting of polyalcohols, straight chain or cyclic saccharides, primary, secondary, tertiary, or quaternary amines and polyamines, sulfate groups, sulfonate groups, sulfinate groups, carboxylate groups, phosphate groups, phosphonate groups, phosphinate groups, ascorbate groups, glycols, and polyethers; and

each Z is independently connected to Y through either X 1 , an atom in R 5 , R 6 , R 7 , R 14 , R 8 , R 9 , R 10 , R 11 , R 15 , R 16 , or an atom bearing any of these R substituents.

2. The compound according to claim 1 wherein and Y is connected to X 1 via an ω-amino aminocarbonyl cyclization spacer being part of Y.

3. The compound according to claim 1 wherein V 1 contains a substrate that can be cleaved by a proteolytic enzyme, plasmin, a cathepsin, cathepsin B, β-glucuronidase, a galactosidase, prostate-specific antigen (PSA), urokinase-type plasminogen activator (u-PA), a member of the family of matrix metalloproteinases, or an enzyme localized by means of directed enzyme prodrug therapy; or wherein V 1 contains a moiety that can be cleaved or transformed through reduction under hypoxic conditions, through reduction by a nitroreductase, or through oxidation.

4. The compound according to claim 1 wherein at least one L is present and such L is selected from

wherein rr, rr′, and rr″ each independently range from 0 to 8, each X 40 and X 41 is independently selected from O, S, and NR 135 , wherein R 135 is selected from H and C 1-3 alkyl, and each uu, uu′, and uu″ is independently selected from 0 and 1.

5. The compound according to claim 1 wherein at least one L 2 is present and such L 2 is

6. The compound according to claim 1 , which is

or an isomer, or a mixture of isomers, wherein R 5 , R 6 , R 7 , R 14 , and DB are as defined in claim 1 , V 1 is selected from valylcitrulline, valyllysine, phenylalanyllysine, alanylphenylalanyllysine, and D-alanylphenylalanyllysine, f is 1 or 2, L is selected from

q ranges from 1 to 20, rr, rr′, and rr″ each independently range from 0 to 8, each X 40 and X 41 is independently selected from O, S, and NR 135 , wherein R 135 is selected from H and C 1-3 alkyl, and each uu, uu′, and uu″ is independently selected from 0 and 1, and Ab is a full-length antibody or an antigen-binding fragment thereof.

7. The compound according to claim 1 , which is

or an isomer, or a mixture of isomers, wherein R 5 , R 6 , R 7 , R 14 , and DB are as defined in claim 1 , f′ is 0, 1 or 2, g′ is 0 or 1, V 1′ is selected from valylcitrulline, valyllysine, phenylalanyllysine, alanylphenylalanyllysine, and D-alanylphenylalanyllysine, L′ is selected from

q′ ranges from 1 to 20, rr, rr′, and rr″ each independently range from 0 to 8, each X 40 and X 41 is independently selected from O, S, and NR 135 , wherein R 135 is selected from H and C 1-3 alkyl, each uu, uu′, and uu″ is independently selected from 0 and 1, Ab is a full-length antibody or an antigen-binding fragment thereof, and V 1 is selected from a mono-, di-, or oligosaccharide or a derivative thereof and

wherein R 141 , R 142 , and R 143 are independently selected from H and optionally substituted C 1-8 alkyl, C 1-8 heteroalkyl, C 3-8 cycloalkyl, C 1-8 heterocycloalkyl, C 5-8 aryl, or C 1-8 heteroaryl.

8. The compound according to claim 1 , which is

or an isomer, or a mixture of isomers, wherein R 5 , R 6 , R 7 , R 14 , and DB are as defined in claim 1 , f′ is 1 or 2, V 1′ is selected from valylcitrulline, valyllysine, phenylalanyllysine, alanylphenylalanyllysine, and D-alanylphenylalanyllysine, L′ is selected from

q′ ranges from 1 to 20, rr, rr′, and rr″ each independently range from 0 to 8, each X 40 and X 41 is independently selected from O, S, and NR 135 , wherein R 135 is selected from H and C 1-3 alkyl, each uu, uu′, and uu″ is independently selected from 0 and 1, Ab is a full-length antibody or an antigen-binding fragment thereof, and V 1 is coupled to an atom of DB and is selected from a mono-, di-, or oligosaccharide or a derivative thereof and

wherein R 141 , R 142 , and R 143 are independently selected from H and optionally substituted C 1-8 alkyl, C 1-8 heteroalkyl, C 3-8 cycloalkyl, C 1-8 heterocycloalkyl, C 5-8 aryl, or C 1-8 heteroaryl.

9. A pharmaceutical composition comprising a compound according to claim 1 and a pharmaceutically acceptable carrier.

10. A method of treating or preventing a tumor in a mammal, which comprises administering a pharmaceutical composition according to claim 9 to the mammal in a therapeutically effective dose.

11. The compound according to claim 1 , wherein DB is

12. The compound according to claim 1 , wherein DB is

13. The compound according to claim 1 , wherein V 1 is phenylalanyllysine, valyllysine, or valylcitrulline.

14. The compound according to claim 1 , wherein Y is selected from

wherein R 117 , R 118 , R 119 , and R 120 are independently selected from the group consisting of H, OH, SH, NH 2 , N 3 , NO 2 , NO, CF 3 , CN, C(O)NH 2 , C(O)H, C(O)OH, halogen, R z , SR z , S(O)R z , S(O) 2 R z , S(O)OR z , S(O) 2 OR z , OS(O)R z , OS(O) 2 R z , OS(O)OR z , OS(O) 2 OR z , OR z , NHR z , N(R z )R z1 , + N(R z )(R z1 )R z2 , P(O)(OR z )(OR z1 ), OP(O)(OR z )(OR z1 ), C(O)R z , C(O)OR z , C(O)N(R z1 )R z2 , OC(O)R z , OC(O)OR z , OC(O)N(R z )R z1 , N(R z1 )C(O)R z , N(R z1 )C(O)OR z , and N(R z1 )C(O)N(R z2 )R z , wherein R z , R z1 , and R z2 are independently selected from H and optionally substituted (CH 2 CH 2 O) ee CH 2 CH 2 X 13 R e1 , C 1-20 alkyl, C 1-20 heteroalkyl, C 3-20 cycloalkyl, C 1-20 heterocycloalkyl, C 5-20 aryl, or C 1-20 heteroaryl, wherein ee is selected from 1 to 1000, X 13 is selected from O, S, and NR f1 , and R f1 and R e1 are independently selected from H and C 1-3 alkyl, two or more of R z , R z1 , and R z2 optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles, and two or more of the substituents R 117 , R 118 , R 119 and R 120 optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles.

15. The compound according to claim 1 , wherein L is selected from the group consisting of

16. The compound according to claim 1 , wherein said Ab is trastuzumab.

Assignments (3)
MERGER AND CHANGE OF NAME Recorded Oct 28, 2021
From: SYNTARGA B.V.; BYONDIS B.V.
To: BYONDIS B.V.
Reel/Frame 057949/0300 →
CHANGE OF ADDRESS Recorded May 13, 2020
From: SYNTARGA B.V.
To: SYNTARGA B.V.
Reel/Frame 052648/0403 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 17, 2015
From: BEUSKER, PATRICK HENRY; COUMANS, RUDY GERARDUS ELISABETH; ELGERSMA, RONALD CHRISTIAAN; MENGE, WIRO MICHAËL PETRUS BERNARDUS; JOOSTEN, JOHANNES ALBERTUS FREDERIKUS; SPIJKER, HENRI JOHANNES; DE GROOT, FRANCISCUS MARINUS HENDRIKUS
To: SYNTARGA B.V.
Reel/Frame 036589/0992 →
Continuity (5)
Division 13126920
Provisional Application 61110765 · Nov 3, 2008
Provisional Application 61140213 · Dec 23, 2008
Provisional Application 61170231 · Apr 17, 2009
Related Publication 20160052880A1 · Feb 25, 2016