Cyclodextrin glucanotransferase
The present invention relates to a novel cyclodextrin glucanotransferase (CGTase) enzyme which is obtainable from Clostridium saccharoperbutylacetonicum N1-4, N1-4(HMT) or N1-504. The invention further relates to nucleic acids encoding the enzyme, vectors and host cells, and uses of the CGTase.
1. An expression vector comprising a nucleic acid molecule, wherein the nucleotide sequence of the nucleic acid molecule:
(a) encodes the amino acid sequence set forth in SEQ ID NO: 1 or 3;
(b) encodes a cyclodextrin glucanotransferase (CGTase) having at least 80% amino acid sequence identity with SEQ ID NO: 1 or 3;
(c) is set forth in SEQ ID NO: 2 or 4; or
(d) has at least 80% sequence identity with the nucleotide sequence set forth in SEQ ID NO: 2 or 4, and which encodes a CGTase.
2. The expression vector of claim 1 , wherein the expression vector additionally comprises one or more genetic elements selected from the group consisting of antibiotic resistance genes, genes conferring tolerance to heavy metals, auxotrophy genes, origins of replication and insertion sequences.
3. The expression vector of claim 1 , wherein the nucleic acid molecule is present in an operon in association with one or more nucleic acid molecules which encode polypeptides which are involved in starch metabolism.
4. The expression vector of claim 3 , wherein the polypeptides which are involved in starch metabolism are selected from the group consisting of a maltose binding protein periplasmic precursor, a neopullanase/cyclomaltodextrinase, one or more maltose/maltodextrin ABC transporter permease proteins, an alpha amylase catalytic domain protein and a glycogen debranching protein.
5. A host cell comprising the expression vector of claim 1 .
6. The host cell as claimed in claim 5 , wherein the host cell is a bacterial cell.
7. The host cell as claimed in claim 6 , wherein the bacterial cell is of the genus Clostridium or Bacillus.
8. The host cell as claimed in claim 5 , wherein the host cell is a biphasic bacteria.
9. The host cell as claimed in claim 5 , wherein the host cell is selected from the group consisting of C. acetobutylicum, C. aurantibutyricum, C. beijerinckii, C. thermocellum, C. thermobutyricum, C. pasteurianum, C. kluyveri, C. saccharobutylicum, C. thermosaccharolyticum, C. saccharolyticum, C. saccharoperbutylacetonicum, C. tyrobutyricum, C. butyricum, C. puniceum, C. diolis and C. roseum ; or the host cell is a Cluster I Clostridia.
10. A recombinant host cell comprising a heterologous nucleic acid molecule integrated into the host cell genome, wherein the nucleotide sequence of the heterologous nucleic acid molecule:
(a) encodes the amino acid sequence set forth in SEQ ID NO: 1 or 3;
(b) encodes a cyclodextrin glucanotransferase (CGTase) having at least 80% amino acid sequence identity with SEQ ID NO: 1 or 3;
(c) is set forth in SEQ ID NO: 2 or 4; or
(d) has at least 80% sequence identity with the nucleotide sequence set forth in SEQ ID NO: 2 or 4, and which encodes a CGTase,
wherein the host cell is neither Clostridium saccharoperbutylacetonicum N1-4 (HMT) nor Clostridium saccharoperbutylacetonicum N1-504.
11. The recombinant host cell of claim 10 , wherein the heterologous nucleic acid molecule additionally comprises one or more genetic elements selected from the group consisting of promoters, terminators, antibiotic resistance genes, genes conferring tolerance to heavy metals, auxotrophy genes, origins of replication and insertion sequences.
12. The recombinant host cell of claim 10 , wherein the heterologous nucleic acid molecule is present in an operon in association with one or more nucleic acid molecules which encode polypeptides which are involved in starch metabolism.
13. The recombinant host cell of claim 12 , wherein the polypeptides which are involved in starch metabolism are selected from the group consisting of a maltose binding protein periplasmic precursor, a neopullanase/cyclomaltodextrinase, one or more maltose/maltodextrin ABC transporter permease proteins, an alpha amylase catalytic domain protein and a glycogen debranching protein.
14. The recombinant host cell as claimed in claim 10 , wherein the recombinant host cell is a bacterial cell.
15. The recombinant host cell as claimed in claim 14 , wherein the bacterial cell is of the genus Clostridium or Bacillus.
16. The recombinant host cell as claimed in claim 10 , wherein the recombinant host cell is a biphasic bacteria.
17. The recombinant host cell as claimed in claim 10 , wherein the recombinant host cell is selected from the group consisting of C. acetobutylicum, C. aurantibutyricum, C. beijerinckii, C. thermocellum, C. thermobutyricum, C. pasteurianum, C. kluyveri, C. saccharobutylicum, C. thermosaccharolyticum, C. saccharolyticum, C. saccharoperbutylacetonicum, C. tyrobutyricum, C. butyricum, C. puniceum, C. diolis and C. roseum ; or the host cell is a Cluster I Clostridia.
18. A host cell comprising a nucleic acid molecule integrated into the host cell genome, wherein the nucleotide sequence of the nucleic acid molecule:
(a) encodes the amino acid sequence set forth in SEQ ID NO: 1 or 3;
(b) encodes a cyclodextrin glucanotransferase (CGTase) having at least 80% amino acid sequence identity with SEQ ID NO: 1 or 3;
(c) is set forth in SEQ ID NO: 2 or 4; or
(d) has at least 80% sequence identity with the nucleotide sequence set forth in SEQ ID NO: 2 or 4, and which encodes a CGTase,
wherein the nucleic acid molecule is operably associated with a constitutive promoter.
19. A host cell comprising two or more nucleic acid molecules integrated into the host cell genome, wherein the nucleotide sequence of the nucleic acid molecules:
(a) encodes the amino acid sequence set forth in SEQ ID NO: 1 or 3;
(b) encodes a cyclodextrin glucanotransferase (CGTase) having at least 80% amino acid sequence identity with SEQ ID NO: 1 or 3;
(c) is set forth in SEQ ID NO: 2 or 4; or
(d) has at least 80% sequence identity with the nucleotide sequence set forth in SEQ ID NO: 2 or 4, and which encodes a CGTase.