IP Library Granted Patent US 9,493,516
Granted Patent B2
US 9,493,516 · App. 14/797,724 · Granted Nov 15, 2016

Bacteriophage gene 3 protein compositions and use as amyloid binding agents

Inventors: Rajaraman Krishnan (Ashland, MA); Richard Fisher (Cambridge, MA)
Assignee: PROCLARA BIOSCIENCES, INC.
C07K14/005A61K38/162A61K47/48353A61K51/1093B82Y5/00C07K14/24C07K16/00C12N7/00A61K38/00C07K2319/30C12N2795/14122C12N2795/14133C12N2795/14171
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Quick Facts
Patent No.
US 9,493,516
App. No.
14/797,724
Granted
Nov 15, 2016
Kind
B2
Abstract

The invention relates to agents and to pharmaceutical compositions for reducing the formation of amyloid and/or for promoting the disaggregation of amyloid proteins. The compositions may also be used to detect amyloid.

Claims (34)

1. A method of treating a subject for a disease or disorder associated with misfolded and/or aggregated amyloid beta, tau, α-synuclein, and/or prion protein, comprising administering to the subject an amyloid-binding polypeptide, wherein the polypeptide comprises at least one of:

(a) a wild-type M13 g3p (SEQ ID NO:1),

(b) an amyloid-binding fragment of wild-type M13 g3p, or

(c) a mutant of (a) or (b) that is at least 95% identical to SEQ ID NO:1 or an amyloid-binding fragment of SEQ ID NO:1;

and wherein the subject is not administered a filamentous bacteriophage.

2. The method of claim 1 , wherein the amyloid-binding polypeptide comprises the N2 domain of wild-type g3p or a corresponding fragment of a mutant g3p.

3. The method of claim 1 , wherein the wild-type g3p or amyloid-binding fragment of wild-type g3p is identical to SEQ ID NO:1 or an amyloid-binding fragment of SEQ ID NO:1.

4. The method of claim 1 , wherein the amyloid-binding polypeptide is at least 95% identical to SEQ ID NO:1 or an amyloid-binding fragment of SEQ ID NO:1.

5. The method of claim 1 , wherein the amyloid-binding polypeptide is at least 98% identical to the SEQ ID NO:1 or an amyloid-binding fragment of SEQ ID NO:1.

6. The method of claim 1 , wherein the amyloid-binding polypeptide is at least 95% identical to the N1-N2 domains of SEQ ID NO:1.

7. The method of claim 1 , wherein the amyloid-binding polypeptide comprises the N1-N2 domains of wild-type g3p or a corresponding fragment of a mutant g3p.

8. The method of claim 1 , wherein the amyloid-binding polypeptide comprises wild-type or mutant full-length g3p.

9. The method of claim 1 , wherein the amyloid-binding polypeptide comprises an N1-N2 fragment of g3p, wherein the hinge region of N2 is mutated to result in a polypeptide with reduced hinge melting temperature and higher affinity for amyloid as compared to a corresponding wild type M13 phage polypeptide.

10. The method of claim 1 , wherein the disease or disorder is selected from the group consisting of Alzheimer's disease, Parkinson's disease, prion diseases, and tauopathies.

11. The method of claim 10 , wherein the prion disease is bovine spongiform encephalitis.

12. The method of claim 10 , wherein the disease or condition is Alzheimer's disease.

13. The method of claim 12 , wherein the Alzheimer's disease is selected from early onset Alzheimer's disease, late onset Alzheimer's disease and presymptomatic Alzheimer's disease.

14. The method of claim 1 , wherein the subject is positive for the biomarker florbetapir when that biomarker is used as an imaging agent in positron emission tomography.

15. The method of claim 1 , wherein the amyloid-binding polypeptide is capable of reducing amyloid, inhibiting amyloid formation, inhibiting amyloid aggregation, or removing toxic oligomer, or preventing toxic oligomer formation.

16. A method of treating a subject for a disease or disorder associated with misfolded and/or aggregated amyloid beta, tau, α-synuclein, and/or prion protein, comprising administering to the subject a fusion protein, wherein the fusion protein comprises an amyloid-binding polypeptide and an immunoglobulin constant region, wherein the amyloid-binding polypeptide comprises at least one of:

(a) a wild-type M13 g3p (SEQ ID NO: 1),

(b) an amyloid-binding fragment of wild-type M13 g3p, or

(c) a mutant of (a) or (b) that is at least 95% identical to SEQ ID NO: 1 or an amyloid-binding fragment of SEQ ID NO: 1.

17. The method of claim 16 , wherein the immunoglobulin constant region is an immunoglobulin Fc fragment.

18. The method of claim 17 , wherein the immunoglobulin Fc fragment is an Fc fragment of IgG or IgM.

19. The method of claim 18 , wherein the IgG is IgG1.

20. The method of claim 16 , wherein the amyloid-binding polypeptide is at least 95% identical to the N1-N2 domains of SEQ ID NO:1.

21. The method of claim 16 , wherein the amyloid-binding polypeptide comprises the N1-N2 domains of wild-type g3p or a corresponding fragment of a mutant g3p.

22. The method of claim 16 , wherein the disease or disorder is selected from the group consisting of Alzheimer's disease, Parkinson's disease, prion diseases, and tauopathies.

23. The method of claim 22 , wherein the prion disease is bovine spongiform encephalitis.

24. The method of claim 22 , wherein the disease or condition is Alzheimer's disease.

25. The method of claim 24 , wherein the Alzheimer's disease is selected from early onset Alzheimer's disease, late onset Alzheimer's disease and presymptomatic Alzheimer's disease.

26. The method of claim 16 , wherein the subject is positive for the biomarker florbetapir when that biomarker is used as an imaging agent in positron emission tomography.

27. The method of claim 16 , wherein the amyloid-binding polypeptide is capable of reducing amyloid, inhibiting amyloid formation, inhibiting amyloid aggregation, or removing toxic oligomer, or preventing toxic oligomer formation.

Assignments (4)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 3, 2023
From: PROCLARA BIOSCIENCES INC.
To: AMYL THERAPEUTICS SRL
Reel/Frame 062952/0788 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 15, 2016
From: FISHER, RICHARD
To: NEUROPHAGE PHARMACEUTICALS, INC.
Reel/Frame 039434/0396 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 15, 2016
From: KRISHNAN, RAJARAMAN
To: NEUROPHAGE PHARMACEUTICALS, INC.
Reel/Frame 039434/0437 →
CHANGE OF NAME Recorded Aug 1, 2016
From: NEUROPHAGE PHARMACEUTICALS, INC.
To: PROCLARA BIOSCIENCES, INC.
Reel/Frame 039535/0182 →
Continuity (5)
Division 14361157
Provisional Application 61564602 · Nov 29, 2011
Provisional Application 61708709 · Oct 2, 2012
Provisional Application 61730316 · Nov 27, 2012
Related Publication 20160009766A1 · Jan 14, 2016