IP Library Granted Patent US 10,196,369
Granted Patent B2
US 10,196,369 · App. 14/910,658 · Granted Feb 5, 2019

Spirocyclic EBI2 modulators

Inventors: Anthony B. Pinkerton (San Diego, CA); Robert Ardecky (La Jolla, CA); Eduard A. Sergienko (San Diego, CA); Marcos Gonzalez-Lopez (La Jolla, CA); Santhi Reddy Ganji (La Jolla, CA); Jiwen Zou (San Diego, CA)
Assignee: SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE
C07D295/16C07D209/12C07D211/26C07D215/14C07D235/10C07D257/04C07D295/26C07D317/46C07D333/56C07D401/06C07D403/12C07D471/04C07D471/10C07D495/04C07F5/025C07F9/650952
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Quick Facts
Patent No.
US 10,196,369
App. No.
14/910,658
Granted
Feb 5, 2019
Kind
B2
Abstract

Provided herein are small molecule Epstein-Barr virus-induced G-protein coupled receptor 2 (EBI2) modulator compounds, compositions comprising the compounds, and methods of using the compounds and compositions comprising the compounds. In some embodiments, EBI2 is a therapeutic target for the treatment of diseases or conditions such as, but not limited to, autoimmune diseases or conditions, cancer, and cardiovascular disease.

Claims (265)

1. A compound having the structure of Formula (I):

wherein:

X is a —CH═CH— or —C≡C—;

Y is a bond or —C(═O);

R 1 is optionally substituted phenyl, optionally substituted indolyl, optionally substituted benzofuranyl, or optionally substituted benzothiophenyl, where R 1 is optionally substituted with one or more substituents selected from F, Cl, Br, —NR 4 R 5 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl, and R 4 and R 5 are each independently H, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, phenyl, or heteroaryl;

R 2 is optionally substituted phenyl or optionally substituted monocyclic heteroaryl, wherein R 2 is optionally substituted with one or more substituents selected from F, Cl, Br, —NR 4 R 5 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl, and R 4 and R 5 are each independently H, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, phenyl, or heteroaryl;

each p is an integer independently 1 or 2; and

each t is an integer independently 1 or 2;

or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof.

2. The compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein R 1 is phenyl substituted with one or more substituents selected from F, Cl, Br, —NH 2 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl.

3. The compound of claim 2 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein R 2 is phenyl substituted with one or more substituents selected from F, Cl, Br, —NH 2 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl.

4. The compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein X is —CH═CH—.

5. The compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein X is —C≡C—.

6. The compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein R 1 is indolyl substituted with one or more substituents selected from F, Cl, Br, —NH 2 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl.

7. The compound of claim 6 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein R 2 is phenyl substituted with one or more substituents selected from F, Cl, Br, —NH 2 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl.

8. The compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein Y is a bond.

9. The compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein Y is —C(═O)—.

10. The compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein each p is 1 and each t is 2, or each p is 2 and each t is 1.

11. A pharmaceutical composition comprising a compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, and a pharmaceutically acceptable excipient.

12. A compound having the structure of Formula (I):

wherein:

X is a —CH═CH— or —C≡C—;

Y is a bond, —C(═O)—, or —CH 2 —;

R 1 is optionally substituted phenyl, optionally substituted indolyl, optionally substituted benzofuranyl, or optionally substituted benzothiophenyl, where R 1 is optionally substituted with one or more substituents selected from F, Cl, Br, —NR 4 R 5 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl, and R 4 and R 5 are each independently H, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, phenyl, or heteroaryl;

R 2 is phenyl optionally substituted with one or more substituents selected from F, Cl, Br, —NR 4 R 5 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl, and R 4 and R 5 are each independently H, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, phenyl, or heteroaryl;

each p is 2; and

each t is 1;

or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof.

13. The compound of claim 12 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein R 1 is phenyl substituted with one or more substituents selected from F, Cl, Br, —NH 2 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl; and R 2 is phenyl substituted with one or more substituents selected from F, Cl, Br, —NH 2 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl.

14. The compound of claim 13 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein X is —CH═CH—.

15. The compound of claim 12 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, wherein R 2 is phenyl substituted with one or more substituents selected from F, Cl, Br, —NH 2 , —NO 2 , —CN, —CF 3 , —OCF 3 , —OH, —OC 1 -C 6 alkyl, C 1 -C 6 alkyl, and heteroaryl.

16. A pharmaceutical composition comprising a compound of claim 12 , or a pharmaceutically acceptable salt, or a pharmaceutically acceptable solvate thereof, and a pharmaceutically acceptable excipient.

17. The compound of claim 1 , or a pharmaceutically accceptable salt, or a pharmaceutically accepetable solvate thereof, wherein the compound is:

C2

(2E)-3-(4-bromophenyl)-1-{7-[(3-bromophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-2-yl}prop-2-en-1-one

C3

3-(4-chlorophenyl)-1-{7-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-

yl}prop-2-en-1-one

C7

(2E)-3-(4-bromophenyl)-1-[2-(phenylcarbonyl)-2,7-diazaspiro[3.5]non-7-

yl]prop-2-en-1-one

C9

(2E)-1-{2-[(3,4-dimethoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl]-3-(4-

bromophenyl)prop-2-en-1-one

C10

(2E)-1-{2-[(3,5-dichlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl]-3-(4-

bromophenyl)prop-2-en-1-one

C12

(2E)-3-(4-bromophenyl)-1-{2-[(3-methylphenyl)carbonyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one

C19

(2E)-3-(4-bromophenyl)-1-{7-[(4-chlorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-2-yl}prop-2-en-1-one

C20

(2E)-3-(4-bromophenyl)-1-{7-[(4-fluorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-2-yl}prop-2-en-1-one

C21

(2E)-3-(4-bromophenyl)-1-(7-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-2-yl)prop-2-en-1-one

C22

(2E)-3-(4-bromophenyl)-1-(7-{[4-fluoro-3-(trifluoromethyl)phenyl]carbonyl}-

2,7-diazaspiro[3.5]non-2-yl)prop-2-en-1-one

C23

(2E)-3-(4-bromophenyl)-1-{7-[(4-(1H-1,2,3,4-tetraazol-5-yl)phenyl)carbonyl]-

2,7-diazaspiro[3.5]non-2-yl}prop-2-en-1-one

C28

(2E)-3-(3,4-dichlorophenyl)-1-{7-[(4-fluorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-2-yl}prop-2-en-1-one

C29

(2E)-3-(3,4-dichlorophenyl)-1-{7-[(4-chlorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-2-yl}prop-2-en-1-one

C30

(2E)-3-(3,4-dichlorophenyl)-1-(7-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-2-yl)prop-2-en-1-one

C31

(2E)-3-(3,4-dichlorophenyl)-1-{7-[(4-(1H-1,2,3,4-tetraazol-5-

yl)phenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-yl}prop-2-en-1-one

C43

4-({2-[(2E)-3-(4-bromophenyl)prop-2-enoyl]-2,7-diazaspiro[3.5]non-7-

yl}carbonyl)-2-fluorobenzenecarbonitrile

C44

(2E)-1-{7-[(3,5-difluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-yl}-3-(4-

bromophenyl)prop-2-en-1-one

C45

(2E)-3-(4-bromophenyl)-1-(7-{[4-fluoro-2-(trifluoromethyl)phenyl]carbonyl}-

2,7-diazaspiro[3.5]non-2-yl)prop-2-en-1-one

C51

(2E)-1-{7-[(4-aminophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-yl}-3-(4-

bromophenyl)prop-2-en-1-one

C52

(2E)-3-(4-bromophenyl)-1-(2-{[4-fluoro-2-(trifluoromethyl)phenyl]carbonyl}-

2,7-diazaspiro[3.5]non-7-yl)prop-2-en-1-one

C53

(2E)-3-(4-bromophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one

C54

(2E)-3-(4-bromophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-en-1-one

C64

3-(4-bromophenyl)-1-{7-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-

yl}prop-2-yn-1-one

C65

3-(4-bromophenyl)-1-(7-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-2-yl)prop-2-yn-1-one

C67

3-(4-bromophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C70

3-(4-bromophenyl)-1-{2-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C71

3-(4-bromophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C74

3-(4-bromophenyl)-1-{2-[(4-methoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-

7-yl}prop-2-yn-1-one

C76

3-(4-chlorophenyl)-1-{2-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C77

3-(4-chlorophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C79

3-(4-chlorophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C80

3-(4-chlorophenyl)-1-(7-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-2-yl)prop-2-yn-1-one

C84

3-(4-chlorophenyl)-1-{7-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-

yl}prop-2-yn-1-one

C86

3-(4-fluorophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C87

1-{2[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl}-3-(4-

fluorophenyl)prop-2-yn-1-one

C88

3-(4-fluorophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C89

3-(4-fluorophenyl)-1-{2-[(4-methoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-

7-yl}prop-2-yn-1-one

C91

3-(4-chlorophenyl)-1-{7-[(4-methoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-

2-yl}prop-2-yn-1-one

C92

3-(4-fluorophenyl)-1-{7-[(4-methoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-

2-yl}prop-2-yn-1-one

C93

3-(4-fluorophenyl)-1-{7-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-

yl}prop-2-yn-1-one

C94

1- {7-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-yl}-3-(4-

fluorophenyl)prop-2-yn-1-one

C95

1- {7-[(4-bromophenyl)carbonyl]-2,7-diazaspiro[3.5]non-2-yl}-3-(4-

fluorophenyl)prop-2-yn-1-one

C96

3-(4-fluorophenyl)-1-(7-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-2-yl)prop-2-yn-1-one

C97

3-(2,4-difluorophenyl)-1-{7-[(4-methoxyphenyl)carbonyl]-2,7-

diazaspiro[3.5]non-2-yl}prop-2-yn-1-one

C99

1-{2-[(4-bromophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl}-3-(4-

fluorophenyl)prop-2-yn-1-one or

L1

(2E)-3-(4-bromophenyl)-1-{2-[(4-chlorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one.

18. The compound of claim 12 , or a pharmaceutically accceptable salt, or a pharmaceutically accepetable solvate thereof, wherein the compound is:

C6

(2E)-3-(4-bromophenyl)-1-{2-[(4-chlorophenyl)methyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one

C7

(2E)-3-(4-bromophenyl)-1-[2-(phenylcarbonyl)-2,7-diazaspiro[3.5]non-7-

yl]prop-2-en-1-one

C8

(2E)-3-(4-bromophenyl)-1-{2-[(4-fluorophenyl)methyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one

C9

(2E)-1-{2-[(3,4-dimethoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl}-3-(4-

bromophenyl)prop-2-en-1-one

C10

(2E)-1-{2-[(3,5-dichlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl}-3-(4-

bromophenyl)prop-2-en-1-one

C11

(2E)-1-{2-[(2,6-dichlorophenyl)methyl]-2,7-diazaspiro[3.5]non-7-yl}-3-(4-

bromophenyl)prop-2-en-1-one

C12

(2E)-3-(4-bromophenyl)-1-{2-[(3-methylphenyl)carbonyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one

C52

(2E)-3-(4-bromophenyl)-1-(2-{[4-fluoro-2-(trifluoromethyl)phenyl]carbonyl}-

2,7-diazaspiro[3.5]non-7-yl)prop-2-en-1-one

C53

(2E)-3-(4-bromophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one

C54

(2E)-3-(4-bromophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-en-1-one

C67

3-(4-bromophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C68

3-(4-bromophenyl)-1-{2-[(4-fluorophenyl)methyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C69

3-(4-bromophenyl)-1-{2-[(4-chlorophenyl)methyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C70

3-(4-bromophenyl)-1-{2-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C71

3-(4-bromophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C72

3-(4-bromophenyl)-1-{2-[(4-bromophenyl)methyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C73

3-(4-bromophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]methyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C74

3-(4-bromophenyl)-1-{2-[(4-methoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-

7-yl}prop-2-yn-1-one

C75

3-(4-bromophenyl)-1-{2-[(4-methoxyphenyl)methyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C76

3-(4-chlorophenyl)-1-{2-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C77

3-(4-chlorophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C78

3-(4-chlorophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]methyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C79

3-(4-chlorophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C82

3-(4-chlorophenyl)-1-{2-[(4-chlorophenyl)methyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C86

3-(4-fluorophenyl)-1-{2-[(4-fluorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-

yl}prop-2-yn-1-one

C87

1-}2-[(4-chlorophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl}-3-(4-

fluorophenyl)prop-2-yn-1-one

C88

3-(4-fluorophenyl)-1-(2-{[4-(trifluoromethyl)phenyl]carbonyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C89

3-(4-fluorophenyl)-1-{2-[(4-methoxyphenyl)carbonyl]-2,7-diazaspiro[3.5]non-

7-yl}prop-2-yn-1-one

C90

3-(4-fluorophenyl)-1-(2-{[4-fluoro-2-(trifluoromethyl)phenyl]methyl}-2,7-

diazaspiro[3.5]non-7-yl)prop-2-yn-1-one

C99

1-{2-[(4-bromophenyl)carbonyl]-2,7-diazaspiro[3.5]non-7-yl}-3-(4-

fluorophenyl)prop-2-yn-1-one or

L1

(2E)-3-(4-bromophenyl)-1-{2-[(4-chlorophenyl)carbonyl]-2,7-

diazaspiro[3.5]non-7-yl}prop-2-en-1-one.

Assignments (2)
CHANGE OF NAME Recorded Dec 4, 2018
From: SANFORD-BURNHAM MEDICAL RESEARCH INSTITUTE
To: SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE
Reel/Frame 047719/0120 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 11, 2016
From: PINKERTON, ANTHONY B.; ARDECKY, ROBERT; SERGIENKO, EDUARD A.; GONZALEZ-LOPEZ, MARCOS; GANJI, SANTHI; ZOU, JIWEN
To: SANFORD-BURNHAM MEDICAL RESEARCH INSTITUTE
Reel/Frame 037960/0328 →
Continuity (3)
Provisional Application 61883100 · Sep 26, 2013
Provisional Application 61883092 · Sep 26, 2013
Related Publication 20160176875A1 · Jun 23, 2016