Compstatin analogs with improved potency and pharmacokinetic properties
View Patent ↗Compounds comprising peptides capable of binding C3 protein and inhibiting complement activation are disclosed. The compounds include a modified compstatin peptide or analog thereof, comprising an added N-terminal component that improves (1) the binding affinity of the peptide to C3, C3b or C3c and/or (2) the plasma stability and/or plasma residence time of the peptide, as compared with an unmodified compstatin peptide under equivalent conditions. Methods of improving the C3 binding of compstatin or compstatin analogs are also disclosed, as well as methods of designing compstatin analogs with improved C3 binding.
1. A method of producing one or more selected modified compstatin analogs, comprising:
(a) providing a compstatin analog comprising a peptide having a sequence of SEQ ID NO:6, which is:
Xaa1-Cys-Val-Xaa2-Gln-Xaa3-Xaa4-Gly-Xaa5-His-Xaa6-Cys-Xaa7 (SEQ ID NO:6), in which Gly between Xaa4 and Xaa5 is N-methylated to constrain the backbone conformation;
wherein:
Xaa1 is Ile or Gly;
Xaa2 is Trp or an analog of Trp, wherein the analog of Trp has increased hydrophobic character as compared with Trp;
Xaa3 is Asp or Asn;
Xaa4 is Trp or an analog of Trp comprising a chemical modification to its indole ring wherein the chemical modification increases the hydrogen bond potential of the indole ring;
Xaa5 is His, Ala, Phe or Trp;
Xaa6 is Arg or Orn; and
Xaa7 is Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile, wherein a carboxy terminal —OH of any of the Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile optionally is replaced by —NH 2 , and the peptide is cyclic via a Cys-Cys or thioether bond;
(b) modifying a plurality of the compstatin analogs by adding an N-terminal component to each analog that interacts with C3, C3b or C3c in a shallow groove formed by macroglobulin domain 4 of the C3 β-chain;
(c) testing the modified compstatin analogs for interaction between the added N-terminal components thereof and a lysine residue in C3, C3b or C3c at position 386 of a C3c sequence comprising SEQ ID NO:5, or equivalent residue thereof on an equivalent sequence of C3, C3b or C3c; and
(d) selecting the modified compstatin analogs having N-terminal components that interact with the lysine residue in C3, C3b or C3c at position 386 of a C3c sequence comprising SEQ ID NO:5, or equivalent residue thereof on an equivalent sequence of C3, C3b or C3c; thereby producing the one or more selected modified compstatin analogs.
2. The method of claim 1 , further comprising comparing binding affinity for C3, C3b or C3c of the selected modified compstatin analogs with that of analog ABM2-Cp20 for C3, C3b or C3c.
3. The method of claim 1 , further comprising testing the selected modified compstatin analogs for binding to albumin.