Compositions and methods to treating hemoglobinopathies
Embodiment herein provide specially designed synthetic BCL11A-targeting microRNAs for RNA polymerase II expression, and methods of use to treat hemoglobinopathies such as sickle cell disease or thalassemia by increasing the expression levels of fetal hemoglobin levels. In particular illustrative embodiment, the present invention provides, in part, improved compositions and methods for achieving gene therapy in hematopoietic cells and hematopoietic precursor cells, including erythrocytes, erythroid progenitors, and embryonic stem cells. The invention further provides improved gene therapy methods for treating hematopoietic-related disorders.
1. A synthetic BCL11A microRNA comprising:
a) a first BCL11A segment, a loop segment; and
b) a second BCL11A segment arranged in tandem in a 5′ to 3′ direction, wherein the loop segment is between and directly linked to the first and second BCL11A segments,
wherein the first BCL11A segment starts with a -GCGC- at the 5′ end and the second BCL11A segment ends with a -GCGC- at the 3′ end, and
wherein the first BCL11A segment is complementary to the second BCL11A segment so that the first and second BCL11A segments base pair to form a hairpin loop with the loop segment forming the loop portion of the hairpin loop thus formed.
2. The synthetic BCL11A microRNA of claim 1 , wherein the first and second BCL11A segments are about 18 to 25 nucleotides long.
3. The synthetic BCL11A microRNA of claim 1 , wherein the first BCL11A segment contains a sequence derived from a BCL11A mRNA sequence.
4. The synthetic BCL11A microRNA of claim 1 , wherein the first BCL11A segment comprises the nucleotide sequence set forth in any one of SEQ ID NOs: 57, 58, 59, 60, 61, 62, 63, 64, and 65.
5. The synthetic BCL11A microRNA of claim 1 , wherein the first BCL11A segment comprises the nucleotide sequence set forth in SEQ ID NO:61.
6. The synthetic BCL11A microRNA of claim 1 , wherein the loop segment is derived from a microRNA.
7. The synthetic BCL11A microRNA of claim 1 , wherein the loop segment is derived from a microRNA selected from the group consisting of: miR-142, miR-155, miR-181 and miR-223.
8. The synthetic BCL11A microRNA of claim 1 , wherein the loop segment is derived from a microRNA selected from miR-223.
9. The synthetic BCL11A microRNA of claim 1 , wherein the loop segment comprises the polynucleotide sequence set forth in SEQ ID NO: 68.
10. The synthetic BCL11A microRNA of claim 1 , wherein the microRNA comprises a polynucleotide sequence set forth in any one of SEQ ID NOs: 34, 35, 36, 37, 38, 39, 40, 41, and 42.
11. The synthetic BCL11A microRNA of claim 1 , wherein the microRNA comprises a polynucleotide sequence set forth in SEQ ID NO: 39.
12. A composition comprising the synthetic BCL11A microRNA of any one of claims 1 - 3 and 4 - 10 .
13. A pharmaceutical composition comprising the synthetic BCL11A microRNA of any one of claims 1 - 3 and 4 - 10 and a pharmaceutically acceptable carrier or diluent.