IP Library › Granted Patent US 9,988,661
Granted Patent B2
US 9,988,661 · App. 15/318,248 · Granted Jun 5, 2018

Process for the modification of a glycoprotein using a glycosyltransferase that is or is derived from A β(1,4)-N-acetylgalactosaminyltransferase

Inventors: Sander Sebastiaan Van Berkel (Lent, NL); Remon Van Geel (Lithoijen, NL); Maria Antonia Wijdeven (Lent, NL); Floris Louis Van Delft (Nijmegen, NL)
Assignee: SynAffix B.V.
C12P21/005A61K47/48384A61K47/48561C07K16/2878C07K16/32C12N9/1051C12Y204/01092C07K2317/14C07K2317/41
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 9,988,661
App. No.
15/318,248
Granted
Jun 5, 2018
Kind
B2
Abstract

The present invention relates to a process for the enzymatic modification of a glycoprotein. The process comprises the step of contacting a glycoprotein comprising a glycan comprising a terminal GlcNAc-moiety, in the presence of glycosyltransferase that is, or is derived from, a β-(1,4)-N-acetylgalactosaminyltransferase, with a non-natural sugar-derivative nucleotide. The non-natural sugar-derivative nucleotide is according to formula (3): wherein A is selected from the group consisting of —N 3 , —C(O)R 3 , —(CH 2 ) i C≡C—R 4 , —SH, —SC(O)R 8 , —SC(O)OR8, —SC(S)OR8, —F, —CI, —Br —I, —OS(O) 2 R 5 , terminal C 2 -C 24 alkenyl groups, C 3 -C 5 cycloalkenyl groups, C 4 -C 8 alkadienyl groups, terminal C 3 -C 24 allenyl groups and amino groups. The invention further relates to a glycoprotein obtainable by the process according to the invention, to a bioconjugate that can be obtained by conjugating the glycoprotein with a linker-conjugate, and to β-(1,4)-N-acetylgalactosaminyltransferases that can be used in preparing the the glycoprotein according to the invention.

Claims (63)

1. A process for the modification of a glycoprotein, the process comprising:

contacting a glycoprotein comprising a glycan comprising a terminal GlcNAc moiety, with a sugar-derivative nucleotide Su(A)-Nuc in the presence of a glycosyltransferase,

wherein:

(i) the glycosyltransferase is, or is derived from, Ascaris summ β-(1,4)-N-acetylgalactosaminytransferase or Trichoplusia ni β-(1,4)-N-acetylgalactosaminyltransferase;

(ii) the glycan, comprising a terminal GlcNAc-moiety, is according to formula (1) and optionally (2)

wherein:

b is 0 or 1;

d is 0 or 1;

e is 0 or 1; and

G is a monosaccharide, or a linear or branched oligosaccharide comprising 2 to 20 sugar moieties; and

(iii) the sugar-derivative nucleotide Su(A)-Nuc is according to formula (3):

wherein:

a is 0 or 1;

f is 0 or 1;

g is 0 or 1;

Nuc is a nucleotide;

U is [C(R 1 ) 2 ]n or [C(R 1 ) 2 ] p —O—[C(R 1 ) 2 C(R 1 ) 2 O] o —[C(R 1 ) 2 ] q , wherein n is an integer in the range of 1 to 24; o is an integer in the range of 0 to 12; p and q are independently 0, 1 or 2; and R 1 is independently selected from the group consisting of H, F, Cl, Br, I, OH and an unsubstituted or substituted C 1 -C 24 alkyl group;

T is a C 3 -C 12 (hetero)arylene group, wherein the (hetero)arylene group is optionally substituted;

A is selected from the group consisting of:

(a) —N 3

(b) —C(O)R 3

wherein R 3 is an unsubstituted or substituted C 1 -C 24 alkyl group;

(c) (hetero)cycloalkynyl group or a (CH 2 ) i C≡C—R 4 moiety

wherein i is 0-10 and R 4 is hydrogen or an unsubstituted or substituted C 1 -C 24 alkyl group;

(d) —SH

(e) —SC(O)R 8

wherein R 8 is an, unsubstituted or substituted, C 1 -C 24 alkyl group or phenyl group;

(f) —SC(V)OR 8

wherein V is O or S, and R 8 is an, unsubstituted or substituted, C 1 -C 24 alkyl group or phenyl group;

(g) —X

wherein X is selected from the group consisting of F, Cl, Br and I;

(h) —OS(O) 2 R 5

wherein R 5 is selected from the group consisting of C 1 -C 24 alkyl groups, C 6 -C 24 aryl groups, C 7 -C 24 alkylaryl groups and C 7 -C 24 arylalkyl groups, groups, aryl groups, alkylaryl groups and arylalkyl groups being optionally substituted;

(i) R 12

wherein R 12 is selected from the group consisting of, unsubstituted or substituted, terminal C 2 -C 24 alkenyl groups, C 3 -C 5 cycloalkenyl groups and C 4 -C 8 alkadienyl groups;

(j) R 13

wherein R 13 is unsubstituted or substituted terminal C 3 -C 24 allenyl group; and

(k) N(R′) 2

wherein R 17 is independently selected from the group consisting of H and C 1 -C 12 alkyl groups;

Z is CH 2 , CF 2 or C(O); or Z is CHOH with the proviso that g is 0, f is 1 and a is 0 or 1;

Y is selected from the group consisting of O, S, N(R 15 ), N(R 15 )C(O), N(R 15 )C(O)N(R 15 ), N(R 15 )C(O)O, OC(O)N(R 15 )S(O) 2 N(R 15 ) and N(R 15 )C(O)N(R 15 )S(O) 2 O, wherein R 15 is independently selected from the group consisting of H, C 1 -C 12 alkyl groups and (U) f -(T) a -A wherein f, a, U, T and A are as defined above; and

R 14 is selected from the group consisting of:

wherein:

a, f, T, A and U are as defined above;

h is 0 or 1; and

W is selected from the group consisting of O, S, NR 15 , NHS(O) 2 O and NHS(O) 2 NR 15 , wherein R 15 is as defined above.

2. The process according to claim 1 , wherein the β-(1,4)-N-acetylgalactosaminyltransferase is Trichoplusia ni β-(1,4)-N-acetylgalactosaminyltransferase.

3. The process according to claim 1 , wherein A is selected from the group consisting of —N 3 , —C(O)CH 3 , —SH, —CH═CH 2 and —CH 2 C≡CH.

4. The process according to claim 1 , wherein the sugar-derivative nucleotide Su(A)-Nuc has formula (15), (16), (17) or (18):

5. The process according to claim 1 , wherein sugar-derivative nucleotide Su(A)-Nuc has formula (19), (20), (21), (22), (23), (24), (25), (26), (65), (66), (67), (68) or (69):

wherein:

R 14 and R 15 are as defined in claim; and

R 16 is independently selected from the group consisting of H and F.

6. The process according to claim 1 , wherein the sugar-derivative nucleotide Su(A)-Nuc has formula (27):

7. The process according to claim 1 , wherein the nucleotide in sugar-derivative nucleotide Su(A)-Nuc is uridine diphosphate (UDP).

8. The process according to claim 1 , wherein the glycan, comprising a terminal GlcNAc moiety, has formula (1), (9), (10) or (11):

9. The process according to claim 1 , wherein the glycoprotein comprising a glycan, comprising a terminal GlcNAc moiety, is according to B formula (7) or (8b):

wherein:

b, d, e and G are as defined in claim 1 ;

y is independently an integer in the range of 1 to 24; and

Pr is a protein.

10. The process according to claim 1 , wherein the glycoprotein, comprising a glycan comprising a terminal GlcNAc moiety, is an antibody.

11. The process according to claim 1 , wherein R 14 is —NHC(O)Me.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 17, 2017
From: VAN BERKEL, SANDER SEBASTIAAN; VAN GEEL, REMON; WIJDEVEN, MARIA ANTONIA; VAN DELFT, FLORIS LOUIS
To: SYNAFFIX B.V.
Reel/Frame 041285/0192 →
Priority Claims (1)
EP 15164864 · Apr 23, 2015 · regional
Continuity (1)
Related Publication 20170130256A1 · May 11, 2017