IP Library Granted Patent US 11,052,155
Granted Patent B2
US 11,052,155 · App. 15/461,560 · Granted Jul 6, 2021

Conjugates of CC-1065 analogs and bifunctional linkers

Inventors: Patrick Henry Beusker (Nijmegen, NL); Rudy Gerardus Elisabeth Coumans (Nijmegen, NL); Ronald Christiaan Elgersma (Nijmegen, NL); Wiro Michael Petrus Bernardus Menge (Nijmegen, NL); Johannes Albertus Frederikus Joosten (Nijmegen, NL); Henri Johannes Spijker (Nijmegen, NL); Franciscus Marinus Hendrikus De Groot (Nijmegen, NL)
Assignee: SYNTARGA BV
A61K47/64A61K31/437A61K38/385A61K39/44A61K47/545A61K47/60A61K47/643A61K47/646A61K47/65A61K47/6803A61K47/6851C07D471/04
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Quick Facts
Patent No.
US 11,052,155
App. No.
15/461,560
Granted
Jul 6, 2021
Kind
B2
Abstract

This invention relates to novel analogs of the DNA-alkylating agent CC-1065 and to their conjugates. Furthermore this invention concerns intermediates for the preparation of said agents and conjugates. The conjugates are designed to release their (multiple) payload after one or more activation steps and/or at a rate and time span controlled by the conjugate in order to selectively deliver and/or controllably release one or more of said DNA alkylating agents. The agents, conjugates, and intermediates can be used to treat an illness that is characterized by undesired (cell) proliferation. As an example, the agents and the conjugates of this invention may be used to treat a tumor.

Claims (44)

1. A compound of formula (IV):

or a pharmaceutically acceptable salt thereof, wherein

RM is a reactive moiety,

L is independently absent or a linking group linking RM to one or more V 1 and/or Y;

each V 1 is independently absent or a conditionally-cleavable or conditionally-transformable moiety, which can be cleaved or transformed by a chemical, photochemical, physical, biological, or enzymatic process;

each Y is a self-eliminating spacer system which is comprised of 1 or more self-elimination ω-amino aminocarbonyl cyclization spacers selected from

and each Y is linked to V 1 , optionally L, and one or more Z;

p is a number representing a degree of branching and is a positive integer;

z is a positive integer equal to or smaller than the total number of attachment sites for Z;

each Z is independently a compound of formula (I), (II), (I′), or (II′):

or a pharmaceutically acceptable salt thereof, wherein

DB is a DNA-binding moiety which is selected from

R 1 is a leaving group;

R 2 , R 2′ , R 3 , R 3′ , R 4 , R 4′ , R 12 , and R 19 are independently selected from the group consisting of H, OH, SH, NH 2 , N 3 , NO 2 , NO, CF 3 , CN, C(O)NH 2 , C(O)H, C(O)OH, halogen, R a , SR a , S(O)R a , S(O) 2 R a , S(O)OR a , S(O) 2 OR a , OS(O)R a , OS(O) 2 R a , OS(O)OR a , OS(O) 2 OR a , OR a , NHR a , N(R a )R b , + N(R a )(R b )R c , P(O)(OR a )(OR b ), OP(O)(OR a )(OR b ), SiR a R b R c , C(O)R a , C(O)OR a , C(O)N(R a )R b , OC(O)R a , OC(O)OR a , OC(O)N(R a )R b , N(R a )C(O)R b , N(R a )C(O)OR, and N(R a )C(O)N(R b )R c , wherein

R a , R b , and R c are independently selected from H and optionally substituted C 1-3 alkyl or C 1-3 heteroalkyl,

or R 3 +R 3′ and/or R 4 +R 4′ are independently selected from ═O, ═S, ═NOR 18 , ═C(R 18 )R 18′ , and ═NR 18 , R 18 and R 18′ being independently selected from H and optionally substituted C 1-3 alkyl, two or more of R 2 , R 2′ , R 3 , R 3′ , R 4 , R 4′ , and R 12 optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles;

X 2 is selected from the group consisting of O, C(R 14 )(R 14′ ), and NR 14′ , wherein R 14 and R 14′ have the same meaning as defined for R 7 and are independently selected, or R 14′ and R 7 are absent resulting in a double bond between the atoms designated to bear R 7 and R 14′ ;

R 5 , R 5′ , R 6 , R 6′ , R 7 , and R 7′ are independently selected from the group consisting of H, OH, SH, NH 2 , N 3 , NO 2 , NO, CF 3 , CN, C(O)NH 2 , C(O)H, C(O)OH, halogen, R e , SR e , S(O)R e , S(O) 2 R e , S(O)OR e , S(O) 2 OR e , OS(O)R e , OS(O) 2 R e , OS(O)OR e , OS(O) 2 OR e , OR e , NHR e , N(R e )R e , + N(R e )(R f )R g , P(O)(OR e )(OR f ), OP(O)(OR e )(OR f ), SiR e R f R g , C(O)R e , C(O)OR e , C(O)N(R e )R f , OC(O)R e , OC(O)OR e , OC(O)N(R e )R f , N(R e )C(O)R f , N(R e )C(O)OR f , N(R e )C(O)N(R f )R g , and a water-soluble group, wherein

R e , R f , and R g are independently selected from H and optionally substituted (CH 2 CH 2 O) ee CH 2 CH 2 X 13 R e1 , C 1-15 alkyl, C 1-15 heteroalkyl, C 3-15 cycloalkyl, C 1-15 heterocycloalkyl, C 5-15 aryl, or C 1-15 heteroaryl, wherein ee is selected from 1 to 1000, X 13 is selected from O, S, and NR f1 , and R f1 and R e1 are independently selected from H and C 1-3 alkyl, one or more of the optional substituents in R e , R f , and/or R g optionally being a water-soluble group, two or more of R e , R f , and R g optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles,

or R 5 +R 5′ and/or R 6 +R 6′ and/or R 7 +R 7′ are independently selected from ═O, ═S, ═NOR e3 , ═C(R e3 )R e4 , and ═NR e3 , R e3 and R e4 being independently selected from H and optionally substituted C 1-3 alkyl, or R 5′ +R 6′ and/or R 6′ +R 7′ and/or R 7′ +R 14′ are absent, resulting in a double bond between the atoms designated to bear R 5′ and R 6′ , and/or R 6′ and R 7′ , and/or R 7′ and R 14′ , respectively, two or more of R 5 , R 5′ , R 6 , R 6′ , R 7 , R 7′ , R 14 , and R 14′ optionally being joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles;

X 1 is selected from the group consisting of O, S, and NR 13 , wherein R 13 is selected from H and optionally substituted C 1-8 alkyl or C 1-8 heteroalkyl and not joined with any other substituent;

one of R 4 and R 4′ may optionally be joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles;

one of R 2 , R 2′ , R 3 , and R 3′ and one of R 5 and R 5′ may optionally be joined by one or more bonds to form one or more optionally substituted carbocycles and/or heterocycles;

a and b are independently selected from 0 and 1;

and

one or more of X 1 , R 5 , R 5′ , R 6 , R 6′ , R 7 , R 7′ , R 14 , and R 14′ may optionally in addition be substituted by or be a substituent of formula (V):

wherein each V 2′ is absent or a functional moiety,

each L 2′ is independently absent or a linking group linking V 2′ to L′,

q′ is a number representing a degree of branching and is a positive integer,

L′, V 1′ , Y′, Z′, p′, and z′ has the same meaning as defined for L, V 1 , Y, Z, p, and z, respectively, and is independently selected, the one or more substituents of formula (V) being independently connected via Y′ to one or more of X 1 , R 5 , R 5′ , R 6 , R 6′ , R 7 , R 7′ , R 14 , R 14′ , and/or to one or more atoms bearing these R substituents;

each Z is independently connected to Y through either Xi, an atom in R 5 , R 5′ , R 6 , R 6′ , R 7 , R 7′ , R 14 , R 14′ , or an atom bearing any of these R substituents,

V 1 , Y, and Z may contain protecting groups, and the one or more V 2′ -L 2′ moieties optionally present in Z as defined hereinabove may optionally and independently be RM′ instead, which is a reactive moiety, and wherein, if there is more than 1 reactive moiety in (IV), some or all reactive moieties are the same or different.

2. The compound according to claim 1 wherein the reactive moiety RM is

wherein

X 35 is selected from the group consisting of halide, hydroxy, OC(O)R dd , and OC(O)OR dd , or C(O)—X 35 is an active ester, X 36 is selected from the group consisting of halide, mesyloxy, triflyloxy, and tosyloxy, and R dd is selected from the group consisting of optionally substituted C 1-10 alkyl, C 1-10 heteroalkyl, C 3-10 cycloalkyl, C 1-10 heterocycloalkyl, C 5-10 aryl, and C 1-10 heteroaryl.

3. The compound according to claim 1 , which is

or an isomer, or a mixture of isomers, wherein R 5a is selected from H, methyl and methoxy, AZ is

V 1 is selected from the group consisting of valylcitrulline, valyllysine, phenylalanyllysine, alanylphenylalanyllysine, and D-alanylphenylalanyllysine, CL is

and L is selected from the group consisting of

4. A pharmaceutical composition comprising a compound according to claim 1 and a pharmaceutically acceptable carrier.

5. The compound according to claim 1 , wherein the compound has the formula

6. A pharmaceutical composition comprising a compound according to claim 2 and a pharmaceutically acceptable carrier.

7. A pharmaceutical composition comprising a compound according to claim 3 and a pharmaceutically acceptable carrier.

8. A pharmaceutical composition comprising a compound according to claim 5 and a pharmaceutically acceptable carrier.

Assignments (3)
MERGER AND CHANGE OF NAME Recorded Oct 28, 2021
From: SYNTARGA B.V.; BYONDIS B.V.
To: BYONDIS B.V.
Reel/Frame 057949/0300 →
CHANGE OF ADDRESS Recorded May 13, 2020
From: SYNTARGA B.V.
To: SYNTARGA B.V.
Reel/Frame 052648/0403 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 29, 2017
From: BEUSKER, PATRICK HENRY; COUMANS, RUDY GERARDUS ELISABETH; ELGERSMA, RONALD CHRISTIAAN; MENGE, WIRO MICHAEL PETRUS BERNARDUS; JOOSTEN, JOHANNES ALBERTUS FREDERIKUS; SPIJKER, HENRI JOHANNES; DE GROOT, FRANCISCUS MARINUS HENDRIKUS
To: SYNTARGA BV
Reel/Frame 041787/0401 →
Continuity (5)
Division 13642847
Provisional Application 61421824 · Dec 10, 2010
Provisional Application 61326437 · Apr 21, 2010
Related Publication 20170274090A1 · Sep 28, 2017
Related Publication 20180133316A9 · May 17, 2018