System and method for confounder-corrected T1 measures using MRI
A system and method are provided for determining B1 inhomogeneities or creating a T1 map of a subject using a magnetic resonance imaging (MRI) system that is corrected for an influence of a presence of fat and a presence of iron in the subject on T1 weighting. The method includes controlling the MRI system using a single pulse sequence to acquire, from the subject, a plurality of datasets with varied T1 weighting created by varying at least one of a repetition time (TR) and a flip angle (FA) for repetitions of the single pulse sequence. The method also includes using an MR signal model and the plurality of datasets, estimating B1 inhomogeneities or generating a T1 map of the subject that is corrected for an influence of a presence of fat and a presence of iron in the subject on T1 weighting in the plurality of datasets.
1. A method for creating a T1 map of a subject using a magnetic resonance imaging (MRI) system, the method including steps comprising:
(i) controlling the MRI system using a single pulse sequence to acquire, from the subject, a plurality of datasets with varied T1 weighting created by varying a repetition time (TR) between repetitions of the single pulse sequence; and
(ii) using an MR signal model and the plurality of datasets, generating a T1 map of the subject that is corrected for an influence of a presence of fat and a presence of iron in the subject on T1 weighting in the plurality of datasets.
2. The method of claim 1 wherein step (ii) includes generating a spatially-co-registered T2*estimates from the plurality of datasets and using the spatially-co-registered T2*estimates to correct the T1 map for the influence of a presence of fat and a presence of iron in the subject on T1 weighting in the plurality of datasets.
3. The method of claim 1 wherein step (ii) includes using the MR signal model and the plurality of datasets to perform joint fitting of T1, T2*, water, and fat signals across multiple echoes sampled to acquire the plurality of datasets.
4. The method of claim 3 wherein the T1 is a T1 of water and a T1 of fat.
5. The method of claim 1 wherein step (i) includes acquiring a different number of echoes to between repetitions of the single pulse sequence to vary the TR.
6. The method of claim 5 wherein a first repetition of the single pulse sequence includes acquiring at least six echoes and a second repetition of the single pulse sequence includes acquiring less than six echoes.
7. The method of claim 6 wherein the second repetition of the single pulse sequence includes acquiring one echo.
8. The method of claim 1 wherein step (ii) includes using the plurality of datasets to determine a proton density fat fraction (PDFF), a proton density water fraction (PDWF), and a T2*estimate, and wherein the PDFF and PDWF are inherently corrected for both T1 and T2*.
9. The method of claim 1 wherein step (i) includes varying a flip angle (FA) of an excitation pulse of the single pulse sequence during repetitions of the single pulse sequence to vary the T1 weighting in at least some of the plurality of datasets.
10. The method of claim 9 wherein an interleaved acquisition is performed by interleaving varying the FA with varying the TR during repetitions of the single pulse sequence to vary the T1 weighting.
11. The method of claim 9 wherein a sequential acquisition is performed by acquiring a first portion of the plurality of datasets by varying the TR during repetitions of the single pulse sequence to vary the T1 weighting and a second portion of the plurality of datasets by varying the FA during repetitions of the single pulse sequence to vary the T1 weighting.
12. The method of claim 1 wherein the plurality of datasets are acquired from a portion of the subject including at least one of liver, pancreas, heart, muscle, or a contrast agent.
13. The method of claim 1 wherein the single pulse sequence is a spoiled gradient echo (SGRE) pulse sequence.
14. A magnetic resonance imaging (MRI) system comprising:
a magnet system configured to generate a polarizing magnetic field about at least a portion of a subject arranged in the MRI system;
a plurality of gradient coils configured to apply a gradient field to the polarizing magnetic field;
a radio frequency (RF) system configured to apply an excitation field to the subject and acquire MR image data from a ROI;
a computer system programmed to:
control the plurality of gradient coils and the RF system to perform a single pulse sequence to acquire, from the subject, a plurality of datasets with varied T1 weighting created by varying a repetition time (TR) between repetitions of the single pulse sequence; and
use an MR signal model and the plurality of datasets, generate a T1 map of the subject that is corrected for an influence of a presence of fat and a presence of iron in the subject on T1 weighting in the plurality of datasets.
15. The system of claim 14 wherein the computer system is further programmed to generate spatially-co-registered T2*estimates from the plurality of datasets and use the spatially-co-registered T2*estimates to correct the T1 map for the influence of a presence of fat and a presence of iron in the subject on T1 weighting in the plurality of datasets.
16. The system of claim 14 wherein the computer system is further programmed to use the MR signal model and the plurality of datasets to perform joint fitting of T1, T2*, water, and fat signals across multiple echoes sampled to acquire the plurality of datasets.
17. The system of claim 14 wherein the computer system is further programmed to acquire a different number of echoes to between repetitions of the single pulse sequence to vary the TR.
18. The system of claim 17 wherein a first repetition of the single pulse sequence includes acquiring at least six echoes and a second repetition of the single pulse sequence includes acquiring less than six echoes.
19. The system of claim 14 wherein the computer system is programmed to use the plurality of datasets to determine a proton density fat fraction (PDFF), a proton density water fraction (PDWF), and a T2*estimate, and wherein the PDFF and PDWF are inherently corrected for both T1 and T2*.
20. The system of claim 14 wherein the computer system is programmed to vary a flip angle (FA) of an excitation pulse of the single pulse sequence during repetitions of the single pulse sequence to vary the T1 weighting in at least some of the plurality of datasets.
21. The system of claim 20 wherein the computer system is further programmed perform an interleaved acquisition by interleaving varying the FA with varying the TR during repetitions of the single pulse sequence to vary the T1 weighting.
22. The system of claim 20 wherein the computer system is further programmed to perform a sequential acquisition by acquiring a first portion of the plurality of datasets by varying the TR during repetitions of the single pulse sequence to vary the T1 weighting and a second portion of the plurality of datasets by varying the FA during repetitions of the single pulse sequence to vary the T1 weighting.
23. A method for creating a T1 map of a subject using a magnetic resonance imaging (MRI) system, the method including steps comprising:
(i) controlling the MRI system using a single pulse sequence to acquire, from the subject, a plurality of datasets with varied T1 weighting created by varying at least one of a repetition time (TR) and a flip angle (FA) for repetitions of the single pulse sequence; and
(ii) using an MR signal model and the plurality of datasets, generating a T1 map of the subject that is corrected for an influence of a presence of fat and a presence of iron in the subject on T1 weighting in the plurality of datasets.
24. The method of claim 23 wherein step (i) includes performing an interleaved acquisition by interleaving varying the FA with varying the TR during repetitions of the single pulse sequence to vary the T1 weighting.
25. The method of claim 23 wherein step (i) includes performing a sequential acquisition by acquiring a first portion of the plurality of datasets by varying the TR during repetitions of the single pulse sequence to vary the T1 weighting and a second portion of the plurality of datasets by varying the FA during repetitions of the single pulse sequence to vary the T1 weighting.
26. A method for creating estimating B1 field inhomogeneity of a magnetic resonance imaging (MRI) system, the method including steps comprising:
(i) controlling the MRI system using a single pulse sequence to acquire a plurality of datasets with varied T1 weighting created by varying a repetition time (TR) between repetitions of the single pulse sequence; and
(ii) using an MR signal model and the plurality of datasets, estimating B1 inhomogeneities present when acquiring the plurality of datasets.
27. The method of claim 26 wherein (ii) further comprises estimating a T1 of water reflected in the plurality of datasets, T1 of fat reflected in the plurality of datasets, R2*reflected in the plurality of datasets, and proton density fat fraction reflected in the plurality of datasets.
28. The method of claim 27 wherein the estimate of B1 inhomogeneities, T1 of water, T1 of fat, R2*, and proton density fat faction are estimated simultaneously.
29. The method of claim 28 wherein step (ii) includes using the MR signal model and the plurality of datasets to perform joint fitting of T1, T2*, water, and fat signals across multiple echoes sampled to acquire the plurality of datasets.
30. The method of claim 29 wherein the T1 is a T1 of water and a T1 of fat.
31. The method of claim 26 wherein step (i) includes acquiring a different number of echoes between repetitions of the single pulse sequence to vary the TR.
32. The method of claim 31 wherein a first repetition of the single pulse sequence includes acquiring at least six echoes and a second repetition of the single pulse sequence includes acquiring less than six echoes.
33. The method of claim 32 wherein the second repetition of the single pulse sequence includes acquiring one echo.
34. The method of claim 26 wherein step (ii) includes generating a spatially-co-registered T2*estimates from the plurality of datasets and using the spatially-co-registered T2*estimates to identify an influence of fat reflected in the plurality of datasets.
35. The method of claim 26 wherein step (i) includes varying a flip angle (FA) of an excitation pulse of the single pulse sequence during repetitions of the single pulse sequence to vary the T1 weighting in at least some of the plurality of datasets.
36. The method of claim 35 wherein an interleaved acquisition is performed by interleaving varying the FA with varying the TR during repetitions of the single pulse sequence to vary the T1 weighting.
37. The method of claim 35 wherein a sequential acquisition is performed by acquiring a first portion of the plurality of datasets by varying the TR during repetitions of the single pulse sequence to vary the T1 weighting and a second portion of the plurality of datasets by varying the FA during repetitions of the single pulse sequence to vary the T1 weighting.
38. The method of claim 26 wherein the single pulse sequence is a spoiled gradient echo (SGRE) pulse sequence.
39. The method of claim 26 further comprising varying a flip angle of at least some of the repetitions of the single pulse sequence.