IP Library Granted Patent US 10,626,094
Granted Patent B2
US 10,626,094 · App. 15/518,331 · Granted Apr 21, 2020

Inhibitors of low molecular weight protein tyrosine phosphatase and uses thereof

Inventors: Nunzio Bottini (La Jolla, CA); Jiwen Zou (La Jolla, CA); Santhi R. Ganji (La Jolla, CA); Stephanie Stanford (La Jolla, CA); Anthony Pinkerton (La Jolla, CA); Thomas D. Y. Chung (La Jolla, CA); Michael Hedrick (La Jolla, CA); Robert Ardecky (La Jolla, CA)
Assignees: SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE; LA JOLLA INSTITUTE OF ALLERGY & IMMUNOLOGY
C07D239/94C07D215/42C07D215/46C07D401/04C07D401/12C07D403/12C07D405/04C07D405/12C07D409/04
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 10,626,094
App. No.
15/518,331
Granted
Apr 21, 2020
Kind
B2
Abstract

Herein are provided, inter alia, compounds capable of modulating the level of activity of low molecular weight protein tyrosine phosphatase (LMPTP) and methods of using the same. In embodiments, the compound has a structure according to Formula (I-A).

Claims (101)

1. A compound having the structure of formula (II):

or a pharmaceutically acceptable salt thereof, wherein:

Z is —NR 9 —, —NR 9 C(O)—, or —O—C(O)—;

L 1 is a bond, substituted or unsubstituted alkylene, substituted or unsubstituted heteroalkylene, substituted or unsubstituted cycloalkylene, substituted or unsubstituted heterocycloalkylene, substituted or unsubstituted arylene, or substituted or unsubstituted heteroarylene;

R 1 is phenyl substituted with a substituent group —C(O)NR 1C R 1D ;

R 1C is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 1D is substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

or R 1C and R 1D and the nitrogen atom they are attached to may optionally combine to form a substituted or unsubstituted heterocycloalkyl;

R 2 is substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 3 is hydrogen, halogen, —CX 3 3 , —CHX 3 2 , —CH 2 X 3 , —OCX 3 3 , —OCHX 3 2 , —OCH 2 X 3 , —CN, —SO n3 R 16 , —SO v3 NR 13 R 14 , —NHC(O)NR 13 R 14 , —N(O) m3 , —NR 13 R 14 , —C(O)R 15 , —C(O)—OR 15 , —C(O)NR 13 R 14 , —OR 16 , —NR 13 SO 2 R 16 , —NR 13 C(O)R 15 , —NR 13 C(O)OR 15 , —NR 13 OR 15 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 4 is hydrogen, halogen, —CX 4 3 , —CHX 4 2 , —CH 2 X 4 , —OCX 4 3 , —OCHX 4 2 , —OCH 2 X 4 , —CN, —SO n4 R 20 , —SO v4 NR 17 R 18 , —NHC(O)NR 17 R 18 , —N(O) m4 , —NR 17 R 18 , —C(O)R 19 , —C(O)—OR 19 , —C(O)NR 17 R 18 , —OR 20 , —NR 17 SO 2 R 20 , —NR 17 C(O)R 19 , —NR 17 C(O)OR 19 , —NR 17 OR 19 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 5 is hydrogen, halogen, —CX 5 3 , —CHX 5 2 , —CH 2 X 5 , —OCX 5 3 , —OCHX 5 2 , —OCH 2 X 5 , —CN, —SO n5 R 24 , —SO v5 NR 21 R 22 , —NHC(O)NR 21 R 22 , —N(O) m5 , —NR 21 R 22 , —C(O)R 23 , —C(O)—OR 23 , —C(O)NR 21 R 22 , —OR 24 , —NR 21 SO 2 R 24 , —NR 21 C(O)R 23 , —NR 21 C(O)OR 23 , —NR 21 OR 23 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 6 is hydrogen, halogen, —CX 6 3 , —CHX 6 2 , —CH 2 X 6 , —OCX 6 3 , —OCHX 6 2 , —OCH 2 X 6 , —CN, —SO n6 R 28 , —SO v6 NR 25 R 26 , —NHC(O)NR 25 R 26 , —N(O) m6 , —NR 25 R 26 , —C(O)R 27 , —C(O)—OR 27 , —C(O)NR 25 R 26 , —OR 28 , —NR 25 SO 2 R 28 , —NR 25 C(O)R 27 , —NR 25 C(O)OR 27 , —NR 25 OR 27 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

each R 8 , R 9 , R 13 , R 14 , R 15 , R 16 , R 17 , R 18 , R 19 , R 20 , R 21 , R 22 , R 23 , R 24 , R 25 , R 26 , R 27 , and R 28 is independently hydrogen, —CX 3 , —CN, —COOH, —CONH 2 , —CHX 2 , —CH 2 X, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

each X is independently —F, —Cl, —Br, or —I;

each X 3 , X 4 , X 5 , and X 6 is independently —F, —Cl, —Br, or —I;

each m3, m4, m5, and m6 is independently 1 or 2;

each n3, n4, n5, and n6 is independently an integer from 0 to 3; and

each v3, v4, v5, and v6 is independently 1 or 2.

2. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein

Z is —NR 9 —;

L 1 is a bond, substituted or unsubstituted alkylene, substituted or unsubstituted heteroalkylene, substituted or unsubstituted arylene, or substituted or unsubstituted heteroarylene; and

R 2 is independently substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl.

3. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein

Z is —NR 9 —;

L 1 is substituted or unsubstituted alkylene or substituted or unsubstituted arylene; and

R 2 is substituted or unsubstituted alkyl or substituted or unsubstituted heterocycloalkyl.

4. The compound of claim 2 , or a pharmaceutically acceptable salt thereof, wherein

Z is —NH—;

L 1 is substituted or unsubstituted C 3 -C 6 alkylene; and

R 2 is substituted or unsubstituted heterocycloalkyl.

5. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein

Z is —NH—;

L 1 is substituted or unsubstituted arylene;

R 2 is C 1 -C 3 alkyl substituted with substituent group R 2A ;

R 2A is —NR 2B R 2C , substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; and

each of R 2B and R 2C is independently hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl, or wherein R 2B and R 2C combine to form a substituted or unsubstituted heterocycloalkyl.

6. The compound of claim 1 , having the structure of formula (II-A):

or a pharmaceutically acceptable salt thereof, wherein:

R 2 is substituted or unsubstituted cycloalkyl or substituted or unsubstituted heterocycloalkyl.

7. The compound of claim 1 , having the structure of formula (II-B):

or a pharmaceutically acceptable salt thereof, wherein:

L 1 is substituted or unsubstituted arylene;

R 2A is independently —NR 2B R 2C , substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; and

each of R 2B and R 2C is independently hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl, or wherein R 2B and R 2C combine to form a substituted or unsubstituted heterocycloalkyl.

8. The compound of claim 6 , or a pharmaceutically acceptable salt thereof, wherein

R 1 is phenyl substituted with substituent group R 1A ; and

R 1A is —C(O)NR 1C R 1D , wherein R 1A is para to the carbon attached to the quinoline moiety.

9. The compound of claim 1 , having the structure of formula (II-C):

or a pharmaceutically acceptable salt thereof, wherein:

R 1C is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; and

R 1D is substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

or wherein R 1C and R 1D attached to the same nitrogen atom optionally combine to form a substituted or unsubstituted heterocycloalkyl.

10. The compound of claim 9 , or a pharmaceutically acceptable salt thereof, wherein

Z is —NR 9 —; and

L 1 is substituted or unsubstituted alkylene or substituted or unsubstituted arylene.

11. The compound of claim 10 , or a pharmaceutically acceptable salt thereof, wherein each of R 3 , R 4 , R 5 , R 6 , and R 8 is hydrogen.

12. A compound that is:

N,N-diethyl-4-(4-((3-(piperidin-1-yl)propyl)amino)quinolin-2-yl)benzamide;

phenyl-N-(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

3-[N-(4-{4-[(3-piperidylpropyl)amino]-2-quinolyl}phenyl)carbamoyl]propanoic acid;

N-(2-cyanoethyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-ethyl-N-methyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(methylethyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-ethyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)-N-(2,2,2-trifluoroethyl)carboxamide;

N-(oxolan-2-ylmethyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

ethyl 2-[(4-{4-[(3-piperidylpropyl)amino]-2-quinolyl}phenyl)carbonylamino]acetate;

N-[2-(dimethylamino)ethyl](4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(3-hydroxypropyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

2-[(4-{4-[(3-piperidylpropyl)amino]-2-quinolyl}phenyl)carbonylamino]acetic acid;

methyl 2-[(4-{4-[(3-piperidylpropyl)amino]-2-quinolyl}phenyl)carbonylamino]acetate;

N-cyclopropyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N,N-dimethyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-methyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

3-amino-5-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl morpholin-4-yl ketone;

4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl pyrrolidinyl ketone;

(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)-N-(2-(4-pyridyl)ethyl)carboxamide;

N-[3-(diethylamino)propyl](4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(2-piperidylethyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(3-morpholin-4-ylpropyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

piperazinyl 4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl ketone;

piperidyl 4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl ketone;

N-(3-aminopropyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(4-piperidyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(4-piperidylmethyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(3-piperidylpropyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(2-methylpropyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-(2-hydroxyethyl)(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

(2-fluoro-4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)-N-methylcarboxamide;

N-ethyl(2-fluoro-4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-cyclohexyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

morpholin-4-yl 4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl ketone;

N-cyclopentyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

(2-chloro-4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)-N-methylcarboxamide;

N-benzyl(4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

N-[2-(diethylamino)ethyl](4-{4-[(3-piperidylpropyl)amino](2-quinolyl)}phenyl)carboxamide;

or a pharmaceutically acceptable salt thereof.

13. A pharmaceutical composition comprising the compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

14. A method of treating a disease or condition, said method comprising administering to a subject in need thereof an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt thereof, and

wherein said disease or condition is diabetes, heart disease, coronary artery disease, hyperlipidemia, lipodystrophy, insulin resistance, rheumatic disease, atherosclerosis, myocardial infarction, stroke, high blood pressure (hypertension), obesity, elevated fasting plasma glucose, high serum triglycerides, elevated blood cholesterol, cardiac hypertrophy, heart failure or metabolic syndrome.

Assignments (3)
CHANGE OF NAME Recorded Sep 7, 2018
From: SANFORD-BURNHAM MEDICAL RESEARCH INSTITUTE
To: SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE
Reel/Frame 047030/0639 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 7, 2018
From: BOTTINI, NUNZIO; STANFORD, STEPHANIE
To: LA JOLLA INSTITUTE OF ALLERGY & IMMUNOLOGY
Reel/Frame 046811/0537 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 5, 2018
From: ZOU, JIWEN; GANJI, SANTHI R.; PINKERTON, ANTHONY; CHUNG, THOMAS D. Y.; HEDRICK, MICHAEL; ARDECKY, ROBERT
To: SANFORD BURNHAM MEDICAL RESEARCH INSTITUTE
Reel/Frame 046790/0363 →
Continuity (2)
Provisional Application 62063937 · Oct 14, 2014
Related Publication 20170247340A1 · Aug 31, 2017
Cited By (1)
US 12,252,471