IP Library Granted Patent US 10,399,970
Granted Patent B2
US 10,399,970 · App. 15/579,148 · Granted Sep 3, 2019

Pyrridinobenzodiazepine and benzopyrridodiazecine compounds

Inventors: David Edwin Thurston (Welwyn Garden City, GB); Khondaker Mirazur Rahman (Welwyn Garden City, GB); Paul Joseph Mark Jackson (Welwyn Garden City, GB)
Assignee: Femtogenix Limited
C07D471/04C07D519/00
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Quick Facts
Patent No.
US 10,399,970
App. No.
15/579,148
Granted
Sep 3, 2019
Kind
B2
Abstract

The invention relates to pyrridinobenzodiazepines (PDDs) comprising three fused 6-7- 6-membered rings and to benzopyrridodiazecines (BPDs) comprising three fused 6-8- 6-membered rings and, in particular, to PDD or BPD dimers linked together or PDD and BPD monomers linked to aromatic groups, and pharmaceutically acceptable salts thereof, which are useful as medicaments, such as anti-proliferative agents. PDDs and BPDs may be represented by formula (I): and salts or solvates thereof, wherein R 2 , R 4 -R 6 and R 8 are independently selected substituent groups; and either: (i) R 9 and R 10 together form a double bond; (ii) R 9 is H and R 10 is OH; or (iii) R 9 is H and R 10 is OR A and R A is C 1-6 alkyl; wherein each of m, n, u and w may be 0 or 1; where (a) the compound is a dimer with each monomer being the same or different and being of formula (I) where one of R 1 , R 2 , R 3 and R 7 of the first monomer and one of R′ 1 , R′ 2 , R 3 and R′ 7 of the second monomer form together a bridge having the formula —X-L-X′— linking the monomers and m+n+u+w=1; or (b) a dimer and one of R 1 , R 2 and R 3 of the first monomer and one of R′ 1 , R′ 2 and R 3 of the second monomer form together a bridge having the formula —X-L-X′— linking the monomers and m=n=u=w=o; or (c) one of R 1 , R 2 , R 3 and R 7 has the formula: —X-L-X′-D or —(CH 2 )f-O—R 14 and m+n+u+w=o or 1; or (d) R 7 has the formula: —X-L-X′— D or —(CH 2 ) g —O— 15 and m+n+u+w=1; and X-L-X′— is a linker group and D has the formula (II) or (III).

Claims (157)

1. A compound of formula (I):

and salts or solvates thereof, wherein:

the dotted lines indicates the optional presence of a double bond between one or more of C1 and C2, C2 and C3, and C3 and C4;

R 4 is selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, ═O, ═CH—R, ═CH 2 , CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN;

R 5 , R 6 and R 8 are independently selected from H, R, OH, OR, SH, SR, NH 2 , NHR, NRR′, CO 2 H, CH 2 —CO 2 H, CO 2 R, CH 2 —CO 2 R, NO 2 , Me 3 Sn and halo;

each R and R′ is independently selected from optionally substituted C 1-12 alkyl, C 3-20 heterocyclyl, C 3-20 heteroaryl, C 4-32 heteroaralkyl, C 5-20 aryl groups and C 6-32 aralkyl;

and either:

(i) R 9 and R 10 together form a double bond;

(ii) R 9 is H and R 10 is OH; or

(iii) R 9 is H and R 10 is OR A and R A is C 1-6 alkyl;

wherein each of m, n, u and w may be 0 or 1; and with the proviso that the compound of formula (I) is a compound according to (a), (b), (c) or (d) wherein:

(a) the compound is a dimer with each monomer being the same or different and being of formula (I) to give a dimer of formula:

where one of R 1 , R 2 , R 3 and R 7 of the first monomer and one of R′ 1 , R′ 2 , R′ 3 and R′ 7 of the second monomer form together a bridge having the formula —X-L-X′— linking the monomers and m+n+u+w=1;

where the remaining groups m′, n′, u′, w′, R′ 4 , R′ 5 , R′ 6 , R′ 8 , R′ 9 and R′ 10 are independently selected from groups with the same meanings as for m, n, u, w, R 4 , R 5 , R 6 , R 8 , R 9 and R 10 respectively;

and the remaining of R 1 , R 2 and R 3 of the first monomer and the remaining of R′ 1 , R′ 2 and R′ 3 of the second monomer that do not form the bridge are independently selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, ═O, ═CH—R, ═CH 2 , CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN, (C 1-12 alkylene)-C(O)NR″,R′″ and (C 2-12 alkenylene)-C(O)NR′R″ and halo;

and the remaining of R 7 of the first monomer and R′ 7 of the second monomer that do not form the bridge are independently selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN, (C 1-12 alkylene)-C(O)NR″,R′″ and (C 2-12 alkenylene)-C(O)NR′R″ and halo;

or

(b) the compound is a dimer with each monomer being the same or different and being of formula (I) to give a dimer of formula (A1), (A2), (A3), (A5), (A6), (A7), (A9), (A10) or (A11); where the remaining groups m′, n′, u′, w′, R′ 4 , R′ 5 , R′ 6 , R′ 8 , R′ 9 and R′ 10 are independently selected from groups with the same meanings as for m, n, u, w, R 4 , R 5 , R 6 , R 8 , R 9 and R 10 respectively;

where one of R 1 , R 2 and R 3 of the first monomer and one of R′ 1 , R′ 2 , and R′ 3 of the second monomer form together a bridge having the formula —X-L-X′— linking the monomers and m=n=u=w=0;

and the remaining of R 1 , R 2 and R 3 of the first monomer and the remaining of R′ 1 , R′ 2 and R′ 3 of the second monomer that do not form the bridge are independently selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, ═O, ═CH—R, ═CH 2 , CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN, (C 1-12 alkylene)-C(O)NR″,R′″ and (C 2-12 alkenylene)-C(O)NR′R″ and halo;

and that R 7 of the first monomer and R′ 7 of the second monomer are independently selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN, (C 1-12 alkylene)-C(O)NR″,R′″ and (C 2-12 alkenylene)-C(O)NR′R″ and halo;

or

(c) one of R 1 , R 2 and R 3 has the formula:

-X-L-X′-D; or

-(CH 2 ) f —O—R 14 ;

wherein R 14 is selected from H and R;

f is 0 or 1;

and m+n+u+w=0 or 1;

and the remaining of R 1 , R 2 and R 3 are independently selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, ═O, ═CH—R, CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN, (C 1-12 alkylene)-C(O)NR″,R′″ and (C 2-12 alkenylene)-C(O)NR′R″ and halo;

and R 7 is selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN, (C 1-12 alkylene)-C(O)NR″,R′″ and (C 2-12 alkenylene)-C(O)NR′R″ and halo;

or

(d) R 7 has the formula:

-X-L-X′-D; or

-(CH 2 ) g —O—R 15 ;

wherein R 15 is selected from H and R;

g is 0 or 1;

and m+n+u+w=1;

and R 1 , R 2 and R 3 are independently selected from H, R, OH, OR, NH 2 , NHR, NRR′, CH 2 —OR, ═O, ═CH—R, ═CH 2 , CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 —SO 2 R, O—SO 2 R, CO 2 R, CO 2 H, COR, CN, (C 1-12 alkylene)-C(O)NR″,R′″ and (C 2-12 alkenylene)-C(O)NR′R″ and halo;

wherein:

X is selected from O, S, NR″, ═CR″—, CR″R′″, CR″R′″O, C(═O), C(═O)NR″, NR″C(═O), O—C(O) and C(O)—O;

L is selected from an amino acid, a peptide chain having from 2 to 6 amino acids, an alkylene chain containing from 1 to 12 carbon atoms which may contain one or more carbon-carbon double or triple bonds, a paraformaldehyde chain (OCH 2 ) 1-12 —, a polyethylene glycol chain —(OCH 2 CH 2 ) 1-6 —, which chains may be interrupted by one or more hetero-atoms and/or C 3-20 heteroaryl and/or C 5-20 aryl groups;

X′ is selected from O, S, NR″, ═CR″—, CR″R′″, CR″R′″O, C(═O), C(═O)NR′, NR″C(═O), O—C(O) and C(O)—O or is absent; and

D has the formula (II) or (III):

p is 0 or 1;

q is 1, 2, 3, 4, 5 or 6;

r is o or 1;

t is o or 1

Y 3 is N or CH;

Y 4 is N or CH; wherein at least one of Y 3 and Y 4 is CH;

R 13 is H, Z—R″, Z—CO 2 R″, Z—C(═O)—NH—(CH 2 ) 1-6 —NR″R′″, and Z—C(═O)—NH—(CH 2 ) 1-6 —C(═NH)NR″R′″;

Z is absent or is selected from C 3-20 heteroaryl, C 1-6 alkyl substituted C 3-20 heteroaryl, —(CH 2 ) k —C 3-20 heterocyclyl, and —O—(CH 2 ) k —C 3-20 heterocyclyl group;

k is 0, 1, 2, 3 or 4;

each R″ and R′″ is independently selected from H, and optionally substituted C 1-12 alkyl;

R 11 is an optionally substituted C 3-20 heteroaryl; and

R 12 is an optionally substituted C 3-20 heteroaryl.

2. A compound of formula (I) according to claim 1 , wherein m=n=u=w=0 and wherein the compound is represented by formula (IV):

3. A compound of formula (I) according to claim 1 , wherein m=n=u=0 and w=1 and wherein the compound is represented by formula (VIII):

4. A compound of formula (I) according to claim 1 , wherein R 5 is H.

5. A compound of formula (I) according to claim 1 , wherein R 6 is selected from H, R, OH, OR and halo.

6. A compound of formula (I) according to claim 1 , wherein R 8 is H.

7. A compound of formula (I) according to claim 1 , wherein X is selected from O, ═CR″—, C(═O)NR″ and NR″C(═O).

8. A compound of formula (I) according to claim 1 , wherein X′ is selected from O, ═CR″—, C(═O)NR″ and NR″C(═O).

9. A compound of formula (I) according to claim 1 , wherein L is an alkylene chain containing from 1 to 12 carbon atoms which may contain one or more carbon-carbon double or triple bonds.

10. A compound of formula (I) according to claim 1 , wherein R 2 is selected from H, CH 2 —CO 2 R, CH 2 —CO 2 H, CH 2 OH, CH 2 OR.

11. A compound of formula (I) according to claim 1 , wherein D has the formula (II) or (III) and R 11 is selected from N-methylpyrrolylene, furanylene, thiophenylene, N-methylimidazolylene, oxazolylene, thiazolylene, indolylene, N-methylindolylene, benzofuranylene, benzothiophenylene, benzimidazolylene, N-methylbenzoimidazolylene, benzooxazolylene and benzothiazolylene.

12. A compound of formula (I) according to claim 1 , wherein D has the formula (II) or (III) and R 12 is selected from N-methylpyrrolylene, furanylene, thiophenylene, N-methylimidazolylene, oxazolylene, thiazolylene, indolylene, N-methylindolylene, benzofuranylene, benzothiophenylene, benzimidazolylene, N-methylbenzoimidazolylene, benzooxazolylene and benzothiazolylene.

13. A compound of formula (I) according to claim 1 , wherein D has the formula (II) or (III), Z is absent and R 13 is CO 2 R″.

14. A compound of formula (I) according to claim 1 , wherein the compound of formula (I) is:

wherein q is selected from 1, 2, 3, 4, 5 or 6; L is an alkylene chain containing from 1 to 12 carbon atoms; Y, Y 1 and Y 2 are CH, N—CH 3 and CH or are N, N—CH 3 and CH; Y 12 is selected from O, S, NH and N—CH 3 ; Y 13 is selected from CH and N; and R″ is selected from H and C 1-6 alkyl.

15. A compound of formula (I) according to claim 1 , wherein the compound is a dimer with each monomer being the same and being of formula (I).

16. A compound of formula (I) according to claim 1 , wherein the compound has the following structure:

and salts or solvates thereof, wherein:

the dotted lines indicates the optional presence of a double bond between one or more of C1 and C2, C2 and C3, and C3 and C4;

R 6 is selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, OCH 2 Ph, NH 2 , NH(C 1-12 alkyl), ═O, ═CH—C 1-12 alkyl, ═CH 2 , CO 2 H, C(O)—O—C 1-12 alkyl;

and either:

(i) R 9 and R 10 together form a double bond;

(ii) R 9 is H and R 10 is OH; or

(iii) R 9 is H and R 10 is O—C 1-6 alkyl;

wherein w may be 0 or 1; and

(a) the compound is a dimer with each monomer being the same or different and being of formula (I) where one of R 1 , R 2 and R 7 of the first monomer and one of R′ 1 , R′ 2 and R′ 7 of the second monomer form together a bridge having the formula —X-L-X′— linking the monomers and w=1;

and the remaining of R 1 and R 2 of the first monomer and the remaining of R′ 1 , and R′ 2 of the second monomer that do not form the bridge are independently selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, NH 2 , NH(C 1-12 alkyl), ═O, ═CH—C 1-12 alkyl, ═CH 2 , CO 2 H and C(O)—O—C 1-12 alkyl;

and the remaining of R 7 of the first monomer and R′ 7 of the second monomer that do not form the bridge are independently selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, OCH 2 Ph, NH 2 , NH(C 1-12 alkyl), CO 2 H and C(O)—O—C 1-12 alkyl;

or

(b) the compound is a dimer with each monomer being the same or different and being of formula (I) where one of RI and R 2 of the first monomer and one of R′ 1 and R′ 2 of the second monomer form together a bridge having the formula —X-L-X′— linking the monomers and w=0;

and the remaining of R 1 , and R 2 of the first monomer and the remaining of R′ 1 and R′ 2 of the second monomer that do not form the bridge are independently selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, NH 2 , NH(C 1-12 alkyl), ═O, —CH—C 1-12 alkyl, ═CH 2 , CO 2 H and C(O)—O—C 1-12 alkyl;

and that R 7 of the first monomer and R′ 7 of the second monomer are independently selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, OCH 2 Ph, NH 2 , NH(C 1-12 alkyl), CO 2 H and C(O)—O—C 1-12 alkyl;

or

(c) one of R 1 and R 2 has the formula: —X-L-X′-D; or —(CH 2 ) f —O—R 14 ;

wherein R 14 is selected from H and C 1-12 alkyl;

f is 0 or 1;

and w is o or 1;

and the remaining of R 1 and R 2 is selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, NH 2 , NH(C 1-12 alkyl), ═O, ═CH—C 1-12 alkyl, ═CH 2 , CO 2 H and C(O)—O—C 1-12 alkyl;

and R 7 is selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, OCH 2 Ph, NH 2 , NH(C 1-12 alkyl), CO 2 H and C(O)—O—C 1-12 alkyl;

or

(d) R 7 has the formula:

—X-L-X′-D;

or

(CH 2 ) g —O—R 15 ;

wherein R 15 is selected from H and C 1-12 alkyl;

g is 0 or 1;

and m+n+u+w=1;

and R 1 and R 2 are independently selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, NH 2 , NH(C 1-12 alkyl), ═O, ═CH—C 1-12 alkyl, ═CH 2 , CO 2 H and C(O)—O—C 1-12 alkyl;

wherein:

X is selected from O, ═CH—, C(═O)NH and NHC(═O);

L is selected from a peptide chain having from 2 to 6 amino acids, an alkylene chain containing from 1 to 12 carbon atoms which may contain one or more carbon-carbon double or triple bonds, —(OCH 2 ) 1-12 —, and —OCH 2 CH 2 ) 1-6 —;

X′ is selected from O, ═CH—, C(═O)NH and NHC(═O) or is absent; and

D is selected from formula (D1):

formula (D2):

formula (D3):

and formula (D4):

p is 0 or 1;

q is 1, 2, 3, 4, 5 or 6;

r is o or 1;

t is o or 1;

Y, Y 1 and Y 2 are selected from CH, CH and N—CH 3 ; CH, N—CH 3 and CH; N, CH and N—CH 3 ; N, N—CH 3 and CH; CH, S and CH; CH, CH and S; N, S and CH; N, CH and S; N, O and CH; N, CH and O; CH, CH and O; CH O and CH; COH, N—CH 3 and CH; and COH, CH and N—CH 3 ;

Y 3 is N or CH;

Y 4 is N or CH; wherein at least one of Y 3 and Y 4 is CH;

Y 5 , Y 6 and Y 7 are selected from CH, CH and N—CH 3 ; CH, N—CH 3 and CH; N, CH and N—CH 3 ; N, N—CH 3 and CH; CH, S and CH; CH, CH and S; N, S and CH; N, CH and S; N, O and CH; N, CH and O; CH, CH and O; CH O and CH; COH, N—CH 3 and CH; and COH, CH and N—CH 3 ;

Y 8 is selected from O, S, NH and N—CH 3 ;

Y 9 is selected from CH and N;

Y 10 is selected from O, S, NH and N—CH 3 ;

Y 11 is selected from CH and N;

R 13 is H, Z—R″, Z—CO 2 R″, Z—C(═O)—NH—(CH 2 ) 1-6 —NR″R′″, and Z—C(═O)—NH—(CH 2 ) 1-6 —C(═NH)NR″R′″;

Z is absent or is selected from benzofuranylene, benzothiophenylene, indolylene, N-methyl indolylene, N-methylbenzimidazolylene, benzoxazolylene and benzothiazolylene;

k is 0, 1, 2, 3 or 4; and

each R″ and R′″ is independently selected from H, and C 1-12 alkyl.

17. A compound of formula (I) according to claim 1 , wherein the compound has the following structure:

or is a dimer with the following structure:

and salts or solvates thereof, wherein:

R 1 and R′ 1 are independently selected from H, C 1-12 alkyl, C 2-12 alkenyl, OH, O—C 1-12 alkyl, NH 2 , NH(C 1-12 alkyl), ═O, ═CH—C 1-12 alkyl, ═CH 2 , CO 2 H and C(O)—O—C 1-12 alkyl;

R 6 , R 7 , R′ 6 , and R 7 are independently selected from H, C 1-12 alkyl, O—C 1-12 alkyl, OCH 2 Ph;

and either:

(i) R 9 and R 10 together form a double bond, and R′ 9 and R′ 10 together form a double bond;

(ii) R 9 is H and R 10 is OH, and R′ 9 is H and R′ 10 is OH; or

(iii) R 9 is H and R 10 is OR A and R A is C 1-6 alkyl, and R′ 9 is H and R′ 10 is O—C 1-6 alkyl;

wherein:

R 2 has the formula:

—X-L-X′-D;

or is:

—(CH 2 ) f —O—R 14 ;

R 14 is selected from H and C 1-12 alkyl;

f is 0 or 1;

X is selected from O, ═CH—, C(═O)NH and NHC(═O);

L is selected from a peptide chain having from 2 to 5 amino acids; an alkylene chain containing from 1 to 11 carbon atoms which may contain one or more carbon-carbon double or triple bonds; —(OCH 2 ) 1-12 — and —(OCH 2 CH 2 ) 1-5 —;

X′ is selected O, ═CH—, C(═O)NH and NHC(═O) or is absent;

D is:

q is 1, 2, 3, 4, 5 or 6;

r is o or 1;

t is o or 1

Y, Y 1 and Y 2 are selected from CH, CH and N—CH 3 ; CH, N—CH 3 and CH; N, CH and N—CH 3 ; N, N—CH 3 and CH;

Y 3 is N or CH;

Y 4 is N or CH; wherein at least one of Y 3 and Y 4 is CH;

Y 5 , Y 6 and Y 7 are selected from CH, CH and N—CH 3 ; CH, N—CH 3 and CH; N, CH and N—CH 3 ; N, N—CH 3 and CH;

R 13 is H, Z—H, Z—C 1-6 alkyl, Z—CO 2 H and Z—CO 2 C 1-6 alkyl; and

Z is absent or is selected from benzofuranylene, benzothiophenylene, indolylene, N-methyl indolylene, N-methylbenzimidazolylene, benzoxazolylene and benzothiazolylene.

18. A pharmaceutical composition comprising a compound of claim 1 and a pharmaceutically acceptable carrier or diluent.

19. A method of treating breast cancer in a subject, the method comprising administering to the subject a therapeutically effective amount of a compound of claim 1 .

Assignments (2)
CHANGE OF NAME Recorded Dec 1, 2022
From: FEMTOGENIX LTD
To: PHEON THERAPEUTICS LTD
Reel/Frame 061940/0689 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 17, 2019
From: JACKSON, PAUL JOSEPH MARK; THURSTON, DAVID EDWIN; RAHMAN, KHONDAKER MIRAZUR
To: FEMTOGENIX LIMITED
Reel/Frame 049212/0441 →
Priority Claims (1)
GB 1510010.0 · Jun 9, 2015 · national
Continuity (1)
Related Publication 20180162855A1 · Jun 14, 2018