Alpha/beta-polypeptide analogs of glucagon-like peptide 1
Described herein are peptide analogs of glucagon-like peptide 1 (GLP-1) that retain agonist activity, but are more resistant to proteolytic degradation than native GLP-1. In the analogs, at least one α-amino acid found in the native GLP-1 is replaced with a β-amino acid residue, which may or may not be cyclically constrained. Pharmaceutical compositions containing the analogs are described, as are methods to treat diabetes, and methods to make proteolytically resistant GLP-1 analogs.
1. A composition of matter comprising an isolated, unnatural analog of glucagon-like peptide 1 (GLP-1) wherein the isolated, unnatural analog of GLP-1 comprises an amino acid sequence of a native GLP-1 wherein at least one a-amino acid residue located at least 12 residues downstream from residue 7 of the native GLP 1 is replaced with a β-amino acid residue, wherein the at least one a-amino acid residue is replaced with a cyclically constrained β-amino acid residue.
2. A composition of matter comprising an isolated, unnatural analog of glucagon-like peptide 1 (GLP-1) wherein the isolated, unnatural analog of GLP-1 comprises an amino acid sequence of a native GLP-1 wherein at least one a-amino acid residue located at least 12 residues downstream from residue 7 of the native GLP 1 is replaced with a β-amino acid residue, wherein at least two α-amino acid residues, each located at least 12 residues downstream from residue 7 of the native GLP-1, are replaced with a β-amino acid residues.
3. The composition of matter of claim 2 , wherein the at least two α-amino acid residues are replaced with cyclically constrained β-amino acid residues.
4. A composition of matter comprising an isolated, unnatural analog of glucagon-like peptide 1 (GLP-1) wherein the isolated, unnatural analog of GLP-1 comprises an amino acid sequence of a native GLP-1 wherein at least one α-amino acid residue located at least 12 residues downstream from residue 7 of the native GLP 1 is replaced with a β-amino acid residue, wherein at least three α-amino acid residues, each located at least 12 residues downstream from residue 7 of the native GLP-1, are replaced with a β-amino acid residue.
5. The composition of matter of claim 4 , wherein the at least three α-amino acid residues are replaced with cyclically constrained β-amino acid residues.
6. A synthetic, unnatural polypeptide having an amino acid sequence as shown in SEQ. ID: NO: 16.
7. The polypeptide of claim 6 , wherein
X at position 9 is 2-aminocyclopentane carboxylic acid (ACPC);
X at position 13 is β 3 -Ser or ACPC;
X at position 17 is β 3 -Gly or ACPC;
X at position 21 is β 3 -Lys or ACPC;
X at position 25 is ACPC; and
X at position 29 is β 3 -Lys or 3-aminopyrrolidine-4-carboxylic acid.
8. The polypeptide of claim 6 , wherein
X at position 9 is ACPC;
X at position 13 is ACPC;
X at position 17 is ACPC;
X at position 21 is ACPC;
X at position 25 is ACPC; and
X at position 29 is 3-aminopyrrolidine-4-carboxylic acid.
9. The polypeptide of claim 6 , wherein
X at position 9 is ACPC;
X at position 13 is β 3 -Ser;
X at position 17 is β 3 -Gly;
X at position 21 is β 3 -Lys;
X at position 25 is ACPC; and
X at position 29 is β 3 -Lys.
10. A method to fabricate glucagon-like peptide- 1 receptor agonists that are resistant to proteolytic degradation, the method comprising:
constructing an isolated, unnatural glucagon-like peptide 1 (GLP-1) analog having an amino acid sequence comprising a native GLP-1 sequence, but replacing at least one α-amino acid residue in the native GLP-1 sequence with a β-amino acid residue, wherein the replacement β-amino acid residue is located at least 12 residues downstream from residue 7 of the native GLP-1 sequence, wherein the at least one α-amino acid residue is replaced with a cyclically constrained β-amino acid residue.
11. A method to fabricate glucagon-like peptide-1 receptor agonists that are resistant to proteolytic degradation, the method comprising:
constructing an isolated, unnatural glucagon-like peptide 1 (GLP-1) analog having an amino acid sequence comprising a native GLP-1 sequence, but replacing at least one α-amino acid residue in the native GLP-1 sequence with a β-amino acid residue, wherein the replacement β-amino acid residue is located at least 12 residues downstream from residue 7 of the native GLP-1 sequence, wherein at least two α-amino acid residues are replaced with β-amino acid residues, and wherein each replacement β-amino acid residue is located at least 12 residues from residue 7 of the native GLP-1 sequence.
12. The method of claim 11 , wherein the at least two α-amino acid residues are replaced with cyclically constrained β-amino acid residues.
13. A method to fabricate glucagon-like peptide-1 receptor agonists that are resistant to proteolytic degradation, the method comprising:
constructing an isolated, unnatural glucagon-like peptide 1 (GLP-1) analog having an amino acid sequence comprising a native GLP-1 sequence, but replacing at least one α-amino acid residue in the native GLP-1 sequence with a β-amino acid residue, wherein the replacement β-amino acid residue is located at least 12 residues downstream from residue 7 of the native GLP-1 sequence, wherein at least three α-amino acid residues are replaced with β-amino acid residues, and wherein each replacement β-amino acid residue is located at least 12 residues from residue 7 of the native GLP-1 sequence.
14. The method of claim 13 , wherein the at least three α-amino acid residues are replaced with cyclically constrained β-amino acid residues.