Systems, methods, and devices for self-digitization of samples
Systems, methods, and devices for discretizing and analyzing fluidic samples are provided. In one aspect, a microfluidic array for discretizing a fluidic sample comprises one or more flow channels and a plurality of fluidic compartments in fluidic communication with the one or more flow channels. In another aspect, a system for discretizing and analyzing fluidic samples comprises a rotor assembly shaped to receive a microfluidic device.
1. A microfluidic array for discretizing a fluidic sample, the array comprising:
a proximal array portion comprising a fluid inlet port and a fluid outlet port;
a distal array portion away from the proximal portion;
one or more flow channels each comprising a length extending from the proximal array portion to the distal array portion, a proximal end in fluidic communication with the fluid inlet port, and a distal end in fluidic communication with the fluid outlet port, wherein at least one flow channel of the one or more flow channels comprises a change in cross-sectional dimension along the at least one flow channel's length from the proximal end to the distal end; and
a plurality of fluidic compartments in fluidic communication with the one or more flow channels,
wherein the change in cross-sectional dimension comprises a continuous tapering profile.
2. The array of claim 1 , wherein the continuous tapering profile comprises a linear tapering profile, an exponential tapering profile, a polynomial tapering profile, or a combination thereof.
3. The array of claim 1 , wherein the cross-sectional dimension comprises one or more of an average cross-sectional width, a maximum cross-sectional width, a minimum cross-sectional width, or a cross-sectional area.
4. A microfluidic device for discretizing a fluidic sample, the device comprising:
a body comprising a proximal body portion and a distal body portion, and
a plurality of microfluidic arrays as recited in claim 1 formed in the body such that the one or more flow channels of the plurality of microfluidic arrays extend substantially parallel to each other from the proximal body portion to the distal body portion.
5. A system for discretizing and analyzing fluidic samples, the system comprising:
a rotor assembly comprising a central axis and a plurality of receptacles arranged radially around the central axis, at least one receptacle of the plurality of receptacles comprising a microfluidic device as recited in claim 4 such that the proximal body portion of the microfluidic device is positioned near the central axis and the distal body portion of the microfluidic device is positioned away from the central axis;
a rotary actuator coupled to the rotor assembly; and
one or more processors configured with instructions to cause the system to rotate the rotor assembly around the central axis using the rotary actuator.
6. The system of claim 5 , further comprising a heating device configured to generate heat, wherein the one or more processors are configured with instructions to cause the system to apply heat to the microfluidic devices received in a receptacle of the plurality of receptacles using the heating device.
7. The system of claim 6 , further comprising a cooling device, wherein the one or more processors are configured with instructions to cause the system to reduce a temperature of the microfluidic devices received in the plurality of receptacles using the cooling device.
8. The system of claim 6 , further comprising a temperature sensor configured to obtain temperature data, wherein the one or more processors are configured with instructions to cause the system to adjust an amount of heat applied by the heating device in response to the temperature data.
9. The system of claim 5 , further comprising an imaging device configured to obtain image data, wherein the one or more processors are configured with instructions to cause the system to obtain image data of the microfluidic devices received in a receptacle of the plurality of receptacles using the imaging device.
10. The system of claim 9 , further comprising an illumination source.
11. The system of claim 9 , wherein the plurality of microfluidic devices comprise a fluidic sample including a fluorophore, the illumination source is configured to produce light energy at an excitation wavelength of the fluorophore, and the imaging device is configured to measure light energy at an emission wavelength of the fluorophore.
12. The system of claim 5 , wherein a first fluid is disposed within the microfluidic device, wherein the one or more processors are configured with instructions to cause discretization of a fluidic sample in the at least one microfluidic device and wherein the fluidic sample is immiscible with the first fluid.
13. A method for discretizing and analyzing a fluidic sample, the method comprising:
providing a microfluidic device recited in claim 4 ;
applying a fluidic sample to the fluid inlet ports of the microfluidic device, the fluidic sample comprising a plurality of discrete analytes; and
rotating the microfluidic device such that the plurality of discrete analytes are driven into a subset of the plurality of fluidic compartments of the microfluidic device.
14. The method of claim 13 , further comprising applying heat to the microfluidic device in order to amplify the analytes present in the microfluidic device, wherein said analytes are nucleic acids.
15. The method of claim 14 , further comprising obtaining image data using an imaging device by applying light energy to the plurality of fluidic compartments; and
measuring a fluorescence signal to determine presence or absence of said analytes within the plurality of fluidic compartments.
16. The method of claim 15 , wherein obtaining the image comprises translating or rotating the imaging device in order to align the microfluidic device with the imaging device.
17. A microfluidic array for discretizing a fluidic sample, the array comprising:
a proximal array portion comprising a fluid inlet port and a fluid outlet port;
a distal array portion away from the proximal portion;
one or more flow channels each comprising a length extending from the proximal array portion to the distal array portion, a proximal end in fluidic communication with the fluid inlet port, and a distal end in fluidic communication with the fluid outlet port, wherein at least one flow channel of the one or more flow channels comprises a change in cross-sectional dimension along the at least one flow channel's length from the proximal end to the distal end; and
a plurality of fluidic compartments in fluidic communication with the one or more flow channels,
wherein at least one flow channel of the one or more flow channels comprises an increasing cross-sectional dimension along the length from the proximal end to the distal end.