Single domain serum albumin binding protein
Disclosed herein are single domain serum albumins binding proteins with improved thermal stability, binding affinities, and robust aggregation profiles. Also described are multispecific binding proteins comprising a single domain serum albumin binding protein according to the instant disclosure. Pharmaceutical compositions comprising the binding proteins disclosed herein and methods of using such formulations are provided.
1. A multispecific protein comprising a serum albumin binding domain, a target antigen binding domain, and a domain that binds to a protein within a T cell receptor complex (TCR), wherein the serum albumin binding domain comprises complementarity determining regions CDR1, CDR2, and CDR3, wherein
(a) the amino acid sequence of CDR1 is as set forth in GFX 1 X 2 X 3 X 4 FGMS (SEQ ID NO. 1), X 1 is threonine, arginine, lysine, serine, or proline, X 2 is phenylalanine or tyrosine, X 3 is serine, arginine or lysine, X 4 is serine, lysine, arginine, or alanine;
(b) the amino acid sequence of CDR2 is as set forth in SISGSGX 5 X 6 TLYAX 7 SX 8 K (SEQ ID NO. 2), X 5 is serine, arginine, threonine, or alanine, X 6 is aspartic acid, histidine, valine, or threonine, X 7 is aspartic acid, histidine, arginine, or serine, X 8 is valine or leucine; and
(c) the amino acid sequence of CDR3 is as set forth in GGSLX 9 X 10 (SEQ ID NO. 3), X 9 is serine, arginine, threonine, or lysine, and X 10 is arginine, lysine, valine, proline, or asparagine, wherein X 1 , X 2 , X 3 , X 4 , X 5 , X 6 , X 7 , X 8 , X 9 , and X 10 are not simultaneously threonine, phenylalanine, serine, serine, serine, aspartic acid, aspartic acid, valine, serine, and arginine, respectively.
2. The multispecific protein of claim 1 , wherein the serum albumin binding domain is at least eighty percent identical to the amino acid sequence set forth in SEQ ID NO. 10.
3. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 14, SEQ ID NO. 15 or SEQ ID NO. 16.
4. The multispecific protein of claim 1 , wherein the CDR2 has an amino acid sequence as set forth in SEQ ID NO. 17, SEQ ID NO. 18, SEQ ID NO. 19, SEQ ID NO. 20, SEQ ID NO. 21, or SEQ ID NO. 22.
5. The multispecific protein of claim 1 , wherein the CDR3 has an amino acid sequence as set forth in SEQ ID NO. 23 or SEQ ID NO. 24.
6. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 14.
7. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 15, the CDR2 has an amino acid sequence as set forth in SEQ ID NO. 17, and the CDR3 has an amino acid sequence as set forth in SEQ ID NO.23.
8. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 16, and the CDR3 has an amino acid sequence as set forth in SEQ ID NO. 23.
9. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 15 and the CDR2 has an amino acid sequence as set forth in SEQ ID NO. 18.
10. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 14 and the CDR3 has an amino acid sequence as set forth in SEQ ID NO. 23.
11. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 15, [r2] the CDR2 comprises SEQ ID NO. 19 and [r3] the CDR3 comprises SEQ ID NO. 24.
12. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 14 and the CDR2 has an amino acid sequence as set forth in SEQ ID NO. 20.
13. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 15, and the CDR2 has an amino acid sequence as set forth in SEQ ID NO. 21.
14. The multispecific protein of claim 1 , wherein the CDR1 has an amino acid sequence as set forth in SEQ ID NO. 15, the CDR2 has an amino acid sequence as set forth in SEQ ID NO. 22 and the CDR3 has an amino acid sequence as set forth in SEQ ID NO. 24.
15. The multispecific protein of claim 1 , wherein the target antigen binding domain binds to a target antigen expressed on a tumor cell.
16. The multispecific protein of claim 1 , wherein the protein within the T cell receptor complex (TCR) is CD3.
17. The multispecific protein of claim 1 , wherein the serum albumin binding domain has an amino acid sequence selected from SEQ ID NO. 4, SEQ ID NO. 5, SEQ ID NO. 6, SEQ ID NO. 7, SEQ ID NO. 8, SEQ ID NO. 9, SEQ ID NO. 25, SEQ ID NO. 26, and SEQ ID NO. 27.
18. A multispecific protein comprising a serum albumin binding domain, a target antigen binding domain, and a domain that binds to a protein within a T cell receptor complex (TCR), wherein the serum albumin binding domain comprises complementarity determining regions CDR1, CDR2, and CDR3 within the sequence set forth as SEQ ID NO. 10 (wt anti-HSA), wherein one or more amino acid residues selected from amino acid positions 28, 29, 30, or 31 of CDR1; positions 56, 57, 62, or 64 of CDR2; and positions 103, and 104 of CDR3 are substituted, wherein
amino acid position 28 is substituted with arginine, lysine, serine, or proline,
amino acid position 29 is substituted with tyrosine,
amino acid position 30 is substituted with arginine or lysine,
amino acid position 31 is substituted with lysine, arginine, or alanine,
amino acid position 56 is substituted with arginine, threonine, or alanine,
amino acid position 57 is substituted with histidine, valine, or threonine,
amino acid position 62 is substituted with histidine, arginine, glutamic acid, or serine,
amino acid position 64 is substituted with leucine,
amino acid position 103 is substituted with arginine, threonine, or lysine,
amino acid position 104 is substituted with lysine, valine, proline, or asparagine.
19. A multispecific protein comprising a serum albumin binding domain, a target antigen binding domain, and a domain that binds to a protein within a T cell receptor complex (TCR), wherein the serum albumin protein comprises at least one mutation in CDR1, CDR2 or CDR3, wherein CDR1 has the sequence as set forth is SEQ ID NO:11, CDR2 has the sequence as set forth in SEQ ID NO:12, CDR3 has the sequence as set forth in SEQ ID NO. 13, and wherein the at least one mutation is not in amino acid positions 1, 2, 7, 8, 9, or 10 of SEQ ID NO: 11, positions 1, 3, 6, 10, or 11 of SEQ ID NO: 12, or positions 1 or 2 of SEQ ID NO: 13.
20. The multispecific protein of claim 19 , comprising at least one mutation in amino acid positions selected from positions 3, 4, 5, and 6 of CDR1 (SEQ ID NO: 11), amino acid positions 7, 8, 13, and 15 of CDR2 (SEQ ID NO: 12), and amino acid positions 5 and 6 of CDR3 (SEQ ID NO: 13).