Benzimidazole-indole inhibitors of Mnk1 and Mnk2
The present invention provides synthesis, pharmaceutically acceptable formulations and uses of compounds in accordance with Formula I or Formula II, or a stereoisomer, tautomer or pharmaceutically acceptable salt thereof. For Formula I compounds X 1 , X 2 , X 3 , X 4 , X 5 , Y 1 , Y 2 , R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 11 , R 12 and R 13 are as defined in the specification. The inventive Formula I and Formula II compounds are inhibitors of Mnk and find utility in any number of therapeutic applications, including but not limited to treatment of inflammation and various cancers.
1. A compound according to Formula I or Formula II
or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein
X 1 is N or CR 5 ;
X 2 is N or CR 6 ;
X 3 is N or CR 7 ;
X 4 and X 5 are independently N or CR 8 ;
Y 1 is H or NR 9 R 10 ;
Y 2 is NR 11 R 12 , alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl;
R 1 is —H, —OH, —SH, —CN, halogen, —(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyl, —O(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyleneNHR 9 , —O(C 1 -C 8 )alkyleneY 1 , —(C 1 -C 8 )alkyleneNHR 9 , —(C 1 -C 8 )alkyleneY 1 , cycloalkyl, heterocyclyl, heteroaryl, aryl, —S(C 1 -C 8 )alkyl, —S(O) 2 R 13 , SO 2 NR 9 R 10 , NHR 9 , Y 1 or NR 9 SO 2 R 13 ;
R 2 is —OH, —CN, halogen, —(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyl, —O(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyleneNHR 9 , —O(C 1 -C 8 )alkyleneY 1 , —C(O)NHR 9 , —C(O)Y 1 , cycloalkyl, heterocyclyl, heteroaryl, aryl, —SR 13 , —SO 2 (C 1 -C 8 ) alkyl, —SO 2 Y 1 , NHR 9 , Y 1 or NR 9 SO 2 R 13 , or R 2 and Y 2 can combine to form a 5- or 6-membered cycloalkyl or heterocyclyl ring;
R 3 , R 5 , R 6 and R 7 are independently —H, —OH, —CN, halogen, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyl, —O(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyleneNHR 9 , —O(C 1 -C 8 )alkyleneY 1 , —C(O)NHR 9 , —C(O)Y 1 , —SR 13 , —SO 2 (C 1 -C 8 ) alkyl, —SO 2 Y 1 , NHR 9 , Y 1 or NR 9 SO 2 R 13 ,
R 4 is —H, (C 1 -C 8 )alkyl, (C 1 -C 8 )haloalkyl, cycloalkyl, heterocyclyl, [(C 1 -C 8 )alkylene] heterocyclyl, aryl, [(C 1 -C 8 )alkylene]aryl or heteroaryl;
R 8 is —H, —OH, halogen, —CN, acetyl, —(C 1 -C 8 )alkyl, —S(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —O(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )haloalkyl, NHR 9 or Y 1 ;
R 9 , R 10 , R 11 and R 12 are independently —H, —(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —C(O)(C 1 -C 8 )alkyl, —C(O)cycloalkyl, —C(O)O(C 1 -C 8 )alkyl, —C(O)—NH 2 , —C(O)—NH(C 1 -C 8 )alkyl, aryl, heteroaryl, heterocyclyl or cycloalkyl, wherein R 11 and R′ 2 cannot both be —H;
R 13 is —H, —(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, cycloalkyl, heterocyclyl, heteroaryl or aryl;
wherein any alkyl, cycloalkyl, heterocyclyl, heteroaryl or aryl is optionally substituted with 1, 2 or 3 groups selected from —OH, —CN, —SH, —S(O)NH 2 , —S(O)NH 2 , halogen, NH 2 , NH(C 1 -C 4 )alkyl, N[(C 1 -C 4 )alkyl] 2 , —C(O)NH 2 , —COOH, —COOMe, —(C 1 -C 8 )alkyl, —O(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, haloalkyl, thioalkyl, cyanomethylene, NH 2 —C(O)-alkylene-, NH 2 —C(O)-alkylene-, NH(Me)-C(O)-alkylene-, —CH 2 —C(O)-lower alkyl, —C(O)-lower alkyl, cycloalkyl, —CH 2 —C(O)-cycloalkyl, —C(O)-cycloalkyl, —CH 2 —C(O)-aryl, —CH 2 -aryl, —C(O)-aryl, —CH 2 —C(O)-heterocycloalkyl or heterocyclyl.
2. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein X 2 is —CH.
3. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein X 3 is —CH.
4. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein X 4 is N and X 5 is —CH.
5. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein Y 1 is NH 2 .
6. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein Y 2 is N((C 1 -C 8 )alkyl)2.
7. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 1 is —H, halogen or —(C 1 -C 8 )alkyl.
8. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 2 is halogen, cycloalkyl or heterocyclyl.
9. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 3 , R 4 , R 5 and R 6 are —H.
10. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 7 is —H, halogen or —(C 1 -C 8 )alkyl.
11. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 9 and R 10 are —H.
12. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 11 and R 12 are independently selected from the group consisting of —(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, heterocyclyl and cycloalkyl.
13. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 8 and R 13 are —H or —(C 1 -C 8 )alkyl.
14. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, selected from
(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-indol-6-yl)(azetidin-1-yl)methanone,
(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-indazol-6-yl)(azetidin-1-yl)methanone,
(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-pyrrolo[3,2-b]pyridin-6-yl)(azetidin-1-yl)methanone,
(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-pyrazolo[4,3-b]pyridin-6-yl)(azetidin-1-yl)methanone, and
3-(6-amino-5-chloropyrimidin-4-yl)-7-isobutyl-1-methyl-1H-indole-6-carboxamide.
15. A pharmaceutical composition comprising (i) a therapeutically effective amount of at least one compound according to claim 1 or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof; (ii) in combination with a pharmaceutically acceptable carrier, diluent or excipient.
16. A compound having the structure:
or a stereoisomer, tautomer, or a pharmaceutically acceptable salt thereof.