IP Library Granted Patent US 10,793,551
Granted Patent B2
US 10,793,551 · App. 16/162,459 · Granted Oct 6, 2020

Benzimidazole-indole inhibitors of Mnk1 and Mnk2

Inventors: Justin T. Ernst (San Diego, CA); Siegfried H. Reich (La Jolla, CA); Paul A. Sprengeler (Escondido, CA); Alan X. Xiang (Irvine, CA)
Assignee: eFFECTOR Therapeutics Inc.
C07D403/04A61P35/00C07D401/14
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Quick Facts
Patent No.
US 10,793,551
App. No.
16/162,459
Granted
Oct 6, 2020
Kind
B2
Abstract

The present invention provides synthesis, pharmaceutically acceptable formulations and uses of compounds in accordance with Formula I or Formula II, or a stereoisomer, tautomer or pharmaceutically acceptable salt thereof. For Formula I compounds X 1 , X 2 , X 3 , X 4 , X 5 , Y 1 , Y 2 , R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 11 , R 12 and R 13 are as defined in the specification. The inventive Formula I and Formula II compounds are inhibitors of Mnk and find utility in any number of therapeutic applications, including but not limited to treatment of inflammation and various cancers.

Claims (37)

1. A compound according to Formula I or Formula II

or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein

X 1 is N or CR 5 ;

X 2 is N or CR 6 ;

X 3 is N or CR 7 ;

X 4 and X 5 are independently N or CR 8 ;

Y 1 is H or NR 9 R 10 ;

Y 2 is NR 11 R 12 , alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl;

R 1 is —H, —OH, —SH, —CN, halogen, —(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyl, —O(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyleneNHR 9 , —O(C 1 -C 8 )alkyleneY 1 , —(C 1 -C 8 )alkyleneNHR 9 , —(C 1 -C 8 )alkyleneY 1 , cycloalkyl, heterocyclyl, heteroaryl, aryl, —S(C 1 -C 8 )alkyl, —S(O) 2 R 13 , SO 2 NR 9 R 10 , NHR 9 , Y 1 or NR 9 SO 2 R 13 ;

R 2 is —OH, —CN, halogen, —(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyl, —O(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyleneNHR 9 , —O(C 1 -C 8 )alkyleneY 1 , —C(O)NHR 9 , —C(O)Y 1 , cycloalkyl, heterocyclyl, heteroaryl, aryl, —SR 13 , —SO 2 (C 1 -C 8 ) alkyl, —SO 2 Y 1 , NHR 9 , Y 1 or NR 9 SO 2 R 13 , or R 2 and Y 2 can combine to form a 5- or 6-membered cycloalkyl or heterocyclyl ring;

R 3 , R 5 , R 6 and R 7 are independently —H, —OH, —CN, halogen, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyl, —O(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )alkyleneNHR 9 , —O(C 1 -C 8 )alkyleneY 1 , —C(O)NHR 9 , —C(O)Y 1 , —SR 13 , —SO 2 (C 1 -C 8 ) alkyl, —SO 2 Y 1 , NHR 9 , Y 1 or NR 9 SO 2 R 13 ,

R 4 is —H, (C 1 -C 8 )alkyl, (C 1 -C 8 )haloalkyl, cycloalkyl, heterocyclyl, [(C 1 -C 8 )alkylene] heterocyclyl, aryl, [(C 1 -C 8 )alkylene]aryl or heteroaryl;

R 8 is —H, —OH, halogen, —CN, acetyl, —(C 1 -C 8 )alkyl, —S(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —O(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, —O(C 1 -C 8 )haloalkyl, NHR 9 or Y 1 ;

R 9 , R 10 , R 11 and R 12 are independently —H, —(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, —C(O)(C 1 -C 8 )alkyl, —C(O)cycloalkyl, —C(O)O(C 1 -C 8 )alkyl, —C(O)—NH 2 , —C(O)—NH(C 1 -C 8 )alkyl, aryl, heteroaryl, heterocyclyl or cycloalkyl, wherein R 11 and R′ 2 cannot both be —H;

R 13 is —H, —(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, cycloalkyl, heterocyclyl, heteroaryl or aryl;

wherein any alkyl, cycloalkyl, heterocyclyl, heteroaryl or aryl is optionally substituted with 1, 2 or 3 groups selected from —OH, —CN, —SH, —S(O)NH 2 , —S(O)NH 2 , halogen, NH 2 , NH(C 1 -C 4 )alkyl, N[(C 1 -C 4 )alkyl] 2 , —C(O)NH 2 , —COOH, —COOMe, —(C 1 -C 8 )alkyl, —O(C 1 -C 8 )alkyl, —(C 2 -C 8 )alkenyl, —(C 2 -C 8 )alkynyl, haloalkyl, thioalkyl, cyanomethylene, NH 2 —C(O)-alkylene-, NH 2 —C(O)-alkylene-, NH(Me)-C(O)-alkylene-, —CH 2 —C(O)-lower alkyl, —C(O)-lower alkyl, cycloalkyl, —CH 2 —C(O)-cycloalkyl, —C(O)-cycloalkyl, —CH 2 —C(O)-aryl, —CH 2 -aryl, —C(O)-aryl, —CH 2 —C(O)-heterocycloalkyl or heterocyclyl.

2. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein X 2 is —CH.

3. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein X 3 is —CH.

4. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein X 4 is N and X 5 is —CH.

5. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein Y 1 is NH 2 .

6. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein Y 2 is N((C 1 -C 8 )alkyl)2.

7. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 1 is —H, halogen or —(C 1 -C 8 )alkyl.

8. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 2 is halogen, cycloalkyl or heterocyclyl.

9. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 3 , R 4 , R 5 and R 6 are —H.

10. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 7 is —H, halogen or —(C 1 -C 8 )alkyl.

11. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 9 and R 10 are —H.

12. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 11 and R 12 are independently selected from the group consisting of —(C 1 -C 8 )alkyl, —(C 1 -C 8 )haloalkyl, heterocyclyl and cycloalkyl.

13. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, wherein R 8 and R 13 are —H or —(C 1 -C 8 )alkyl.

14. The compound according to claim 1 , or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof, selected from

(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-indol-6-yl)(azetidin-1-yl)methanone,

(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-indazol-6-yl)(azetidin-1-yl)methanone,

(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-pyrrolo[3,2-b]pyridin-6-yl)(azetidin-1-yl)methanone,

(3-(6-aminopyrimidin-4-yl)-5-chloro-1-methyl-7-(1-methylpiperidin-3-yl)-1H-pyrazolo[4,3-b]pyridin-6-yl)(azetidin-1-yl)methanone, and

3-(6-amino-5-chloropyrimidin-4-yl)-7-isobutyl-1-methyl-1H-indole-6-carboxamide.

15. A pharmaceutical composition comprising (i) a therapeutically effective amount of at least one compound according to claim 1 or a stereoisomer, a tautomer or a pharmaceutically acceptable salt thereof; (ii) in combination with a pharmaceutically acceptable carrier, diluent or excipient.

16. A compound having the structure:

or a stereoisomer, tautomer, or a pharmaceutically acceptable salt thereof.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 19, 2026
From: OXFORD FINANCE LLC; EFFECTOR THERAPEUTICS, INC.
To: SJP BIOTEC GMBH
Reel/Frame 074939/0717 →
SECURITY INTEREST Recorded Jul 25, 2024
From: EFFECTOR THERAPEUTICS, INC.
To: OXFORD FINANCE LLC, AS COLLATERAL AGENT
Reel/Frame 068086/0538 →
Continuity (2)
Provisional Application 62574432 · Oct 19, 2017
Related Publication 20190119256A1 · Apr 25, 2019