IP Library Granted Patent US 11,040,975
Granted Patent B2
US 11,040,975 · App. 16/212,121 · Granted Jun 22, 2021

Carbocyclic nucleoside reverse transcriptase inhibitors

Inventors: Francois-Rene Alexandre (Montpellier, FR); Rachid Rahali (Saint Laurent des Arbres, FR); Izzat Raheem (Doylestown, PA); Christophe Parsy (Jacou, FR)
Assignees: Merck Sharp & Dohme Corp.; Idenix Pharmaceuticals LLC
C07D473/40A61K31/513A61K31/52A61K31/522A61K31/675A61K31/7072C07D239/47C07D239/54C07D473/32C07F9/6512C07F9/6561C07F9/65616
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Quick Facts
Patent No.
US 11,040,975
App. No.
16/212,121
Granted
Jun 22, 2021
Kind
B2
Abstract

The present invention is directed carbocyclic nucleoside reverse transcriptase inhibitors compounds of Formula I and their use in the inhibition of HIV reverse transcriptase, the prophylaxis of infection by HIV, the treatment of infection by HIV, and the prophylaxis, treatment, and delay in the onset or progression of AIDS and/or ARC.

Claims (61)

1. A compound of structural Formula I

or a pharmaceutically acceptable salt thereof, wherein:

R is

X is —N— or —C(H)—;

R 7 is —CH, —N, —C 1-6 alkyl or —C-aryl;

R 1 is H,

R 2 is H or —CH 2 —O—C 1-6 alkyl;

R 3 is halo, —NH 2 , oxo (═O), —O—C 1-6 alkyl or —O—C(O)—N(phenyl) 2 ;

R 4 is halo or —NR a R b ;

R a and R b are each independently selected from —H, —C 1-6 alkyl or —C(O)—C 1-6 alkyl;

R 5 is —H or —C(O)-phenyl; and

R 6 is —H or —C(O)-phenyl.

2. The compound of claim 1 or a pharmaceutically acceptable salt thereof wherein:

R 1 is H,

R 2 is H or —CH 2 —O—C 1-3 alkyl;

R 3 is halo, —NH 2 , oxo, —O—C 1-3 alkyl or —O—C(O)—N(phenyl) 2 ; and

R 4 is halo, —NH 2 or —NH—C(O)—C 1-3 alkyl.

3. The compound of claim 1 that is:

(1S,2S,4R)-4-(6-chloro-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(6-chloro-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(6-amino-2-fluoro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(2-amino-6-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(2-amino-6-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(2,6-dichloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(2,6-dichloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(6-amino-2-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(6-amino-2-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(6-amino-2-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol or (1R,2R,4S)-4-(6-amino-2-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(6-amino-2-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol or (1R,2R,4S)-4-(6-amino-2-chloro-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(2,4-dichloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(2,4-dichloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

(1S,2S,4R)-4-(4-amino-2-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(4-amino-2-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

2-amino-9-((1R,3 S,4S)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-6H-purin-6-one and 2-amino-9-((1S,3R,4R)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-6H-purin-6-one;

2-amino-9-((1R,3 S,4S)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-6H-purin-6-one or 2-amino-9-((1S,3R,4R)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-6H-purin-6-one;

2-amino-9-((1R,3 S,4S)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-6H-purin-6-one or 2-amino-9-((1S,3R,4R)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-1,9-dihydro-6H-purin-6-one;

(1S,2S,4R)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol and (1R,2R,4S)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-2-ethynyl-2-(hydroxymethyl)cyclopentan-1-ol;

1-((1R,3 S,4S)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-5-methylpyrimidine-2,4(1H,3H)-dione and 1-((1S,3R,4R)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)-5-methylpyrimidine-2,4(1H,3H)-dione;

4-amino-1-((1R,3 S,4 S)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cycl opentyl)pyrimidin-2(1H)-one and 4-amino-1-((1S,3R,4R)-3-ethynyl-4-hydroxy-3-(hydroxymethyl)cyclopentyl)pyrimidin-2(1H)-one;

Isopropyl ((S)-(((1S,2S,4R)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methoxy)(phenoxy)phosphoryl)-L-alaninate and Isopropyl ((S)-(((1R,2R,4S)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methoxy)(phenoxy)phosphoryl)-L-alaninate;

Isopropyl ((S)-(((1S,2S,4R)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methoxy)(phenoxy)phosphoryl)-L-alaninate or Isopropyl ((S)-(((1R,2R,4S)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methoxy)(phenoxy)phosphoryl)-L-alaninate;

Isopropyl ((S)-(((1S,2S,4R)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methoxy)(phenoxy)phosphoryl)-L-alaninate or Isopropyl ((S)-(((1R,2R,4S)-4-(2-amino-6-ethoxy-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methoxy)(phenoxy)phosphoryl)-L-alaninate;

((1S,2S,4R)-4-(6-chloro-2-fluoro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(6-chloro-2-fluoro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(6-amino-2-fluoro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(6-amino-2-fluoro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(2-amino-6-chloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(2-amino-6-chloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(2,6-dichloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(2,6-dichloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(6-amino-2-chloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(6-amino-2-chloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(6-amino-2-chloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate or ((1R,2R,4S)-4-(6-amino-2-chloro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(2,4-dichloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(2,4-dichloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(4-amino-2-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(4-amino-2-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-1-ethynyl-2-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-1-ethynyl-2-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl)methyl tetrahydrogen triphosphate;

((1S,2S,4R)-4-(4-amino-2-oxopyrimidin-1(2H)-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(4-amino-2-oxopyrimidin-1(2H)-yl)-1-ethynyl-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate;

(1S,2S,4R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile and (1R,2R,4S)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile;

(1S,2S,4R)-4-(4-amino-2-oxopyrimidin-1(2H)-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile and (1R,2R,4S)-4-(4-amino-2-oxopyrimidin-1(2H)-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile;

(1S,2S,4R)-2-hydroxy-1-(hydroxymethyl)-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentane-1-carbonitrile and (1R,2R,4S)-2-hydroxy-1-(hydroxymethyl)-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentane-1-carbonitrile;

(1S,2S,4R)-4-(6-amino-2-fluoro-9H-purin-9-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile or (1R,2R,4S)-4-(6-amino-2-fluoro-9H-purin-9-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile;

(1S,2S,4R)-4-(6-amino-2-fluoro-9H-purin-9-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile or (1R,2R,4S)-4-(6-amino-2-fluoro-9H-purin-9-yl)-2-hydroxy-1-(hydroxymethyl)cyclopentane-1-carbonitrile;

((1S,2S,4R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-1-cyano-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-1-cyano-2-hydroxycyclopentyl)methyl tetrahydrogen triphosphate; or

((1S,2S,4R)-1-cyano-2-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-y l)cyclopentyl)methyl tetrahydrogen triphosphate and ((1R,2R,4S)-1-cyano-2-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl)methyl tetrahydrogen triphosphate;

or a pharmaceutically acceptable salt thereof.

4. A pharmaceutical composition comprising an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.

5. A pharmaceutical composition comprising an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier and further comprising an effective amount of an anti-HIV agent selected from an anti-HIV antiviral agent, an immunomodulator, or anti-infective agent.

6. The pharmaceutical composition of claim 5 , wherein the anti-HIV antiviral agent is an HIV protease inhibitor, HIV reverse transcriptase inhibitor, HIV integrase inhibitor, HIV fusion inhibitor, HIV entry inhibitor, or HIV maturation inhibitor.

7. The pharmaceutical composition of claim 4 further comprising one or more additional HIV antiviral agents selected from:

abacavir, abacavir sulfate, abacavir+lamivudine, abacavir+lamivudine+zidovudine, amprenavir, atazanavir, atazanavir sulfate, AZT, capravirine, darunavir, dideoxycytidine, dideoxyinosine, delavirdine, delavirdine mesylate, dolutegravir, doravirine, efavirenz, 4′-ethynyl-2-fluoro-2′-deoxyadenosine, elvitegravir, emtricitabine, emivirine, enfuvirtide, etravirine, fosamprenavir calcium, indinavir, indinavir sulfate, lamivudine, lamivudine+zidovudine, lopinavir, lopinavir+ritonavir, maraviroc, nelfinavir, nelfinavir mesylate, nevirapine, PPL-100, raltegravir, rilpivirine, ritonavir, saquinavir, saquinavir mesylate, stavudine, tipranavir, or vicriviroc.

8. A method for the treatment of infection by HIV or for the treatment or delay in the onset of AIDS in a subject in need thereof, which comprises administering to the subject an effective amount of the compound of claim 1 , or a pharmaceutically acceptable salt thereof.

Assignments (3)
MERGER Recorded Aug 8, 2022
From: MERCK SHARP & DOHME CORP.
To: MERCK SHARP & DOHME LLC
Reel/Frame 061102/0145 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 6, 2018
From: RAHEEM, IZZAT T.
To: MERCK SHARP & DOHME CORP.
Reel/Frame 047696/0986 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 6, 2018
From: ALEXANDRE, FRANCOIS-RENE; RAHALI, RACHID; PARSY, CHRISTOPHE
To: IDENIX PHARMACEUTICALS LLC
Reel/Frame 047697/0056 →