Alpha-synuclein detection assay and method for diagnosing alpha-synucleinopathies
View Patent ↗A method of detecting the presence of alpha-synuclein aggregation in a biological sample is provided whereby a biological sample is mixed with a reaction sample comprising a population of beads, a fluorophore adapted to bind to protein aggregates and to increase fluorescence when bound to protein aggregates, and alpha-synuclein or a fragment or variant thereof to form a reaction mixture, the reaction mixture is illuminated and at the same time incubated with intermittent agitation cycles, wherein a significant increase in the fluorescence of the reaction mixture during incubation is indicative of the presence of aggregates of alpha-synuclein in the biological sample. Method of diagnosing alpha-synucleinopathies such as Parkinson's disease or Dementia with Lewy Bodies.
1. A method of detecting the presence of alpha-synuclein aggregation in a biological sample, the method comprising the steps:
(i) providing a biological sample;
(ii) providing a reaction sample comprising:
(a) a population of beads, wherein the population of beads has a mean diameter from 1 mm±10% to 0.001 mm±10%;
(b) a fluorophore adapted to bind to protein aggregates and to increase fluorescence when bound to protein aggregates; and
(c) alpha-synuclein or a fragment or variant thereof;
(iii) combining the biological sample and the reaction sample to form a reaction mixture;
(iv) incubating the reaction mixture with intermittent agitation cycles;
(v) illuminating the sample with a wavelength of light that excites the fluorophore of the reaction sample; and
(vi) determining the level of fluorescence of the reaction mixture during incubation,
wherein steps (iv) to (vi) are carried out at the same time, and a significant increase in the fluorescence of the reaction mixture during steps (iv) to (vi) is indicative of the presence of aggregates of alpha-synuclein in the reaction mixture, and wherein the presence of aggregates of alpha-synuclein in the reaction mixture is indicative of the presence of aggregates of alpha-synuclein in the biological sample, and
wherein the population of beads does not include magnetic beads, and
wherein the method does not include a step of concentrating the biological sample prior to incubating the reaction mixture.
2. The method according to claim 1 , wherein the biological sample is a bodily fluid sample, wherein the bodily fluid is selected from the group consisting of cerebrospinal fluid (CSF), blood, blood fractions, nasal fluid, nasal tissue, urine, faeces, and lymph.
3. The method according to claim 1 , wherein the reaction sample is a buffered reaction sample, wherein the reaction sample is buffered to maintain the pH of the reaction sample from pH 6 to pH 8.5.
4. The method according to claim 1 , wherein the protein aggregates comprise significant beta-sheet content.
5. The method according to claim 1 , wherein the fluorophore is a thioflavin or cyanine T-284.
6. The method according to claim 1 , wherein the reaction sample comprises from 0.01 mg/mL alpha-synuclein to 10 mg/mL alpha-synuclein to act as an aggregation substrate.
7. The method according to claim 1 , wherein the alpha-synuclein of the reaction sample is a fragment of full length alpha-synuclein.
8. The method according to claim 1 , wherein the beads of the population of beads of the reaction sample comprise zirconia/silica, glass, quartz, or a polymer selected from the group consisting of polystyrene, polytetrafluoroethylene (PTFE), polymethylmethacrylate (PMMA), and combinations thereof.
9. The method according to claim 1 , wherein the population of beads has a mean diameter of the beads from 1 mm±10% to 0.1 mm±10%.
10. The method according to claim 1 , wherein the reaction sample comprises from 1 mg to 150 mg of beads per 100 μL of reaction mixture.
11. The method according to claim 1 , wherein the reaction mixture is incubated for more than 40 hours, more than 60 hours, more than 80 hours, or more than 120 hours.
12. The method according to claim 1 , wherein the method is carried out at a temperature of from 25° C. to 45° C.
13. A method of detecting the presence of alpha-synuclein aggregation in a biological sample, the method comprising steps:
(i) providing a biological sample;
(ii) providing a reaction sample comprising:
(a) a population of beads, wherein the population of beads is chemically inert and has a mean diameter from 1 mm±10% to 0.1 mm±10%;
(b) a fluorophore adapted to bind to protein aggregates and to increase fluorescence when bound to protein aggregates; and
(c) alpha-synuclein or a fragment or variant thereof;
(iii) combining the biological sample and the reaction sample to form a reaction mixture;
(iv) incubating the reaction mixture with intermittent agitation cycles;
(v) illuminating the sample with a wavelength of light that excites the fluorophore of the reaction sample; and
(vi) determining the level of fluorescence of the reaction mixture during incubation,
wherein steps (iv) to (vi) are carried out at the same time, and a significant increase in the fluorescence of the reaction mixture during steps (iv) to (vi) is indicative of the presence of aggregates of alpha-synuclein in the reaction mixture, and wherein the presence of aggregates of alpha-synuclein in the reaction mixture is indicative of the presence of aggregates of alpha-synuclein in the biological sample.
14. The method according to claim 13 , wherein the biological sample is selected from the group consisting of CSF and blood.
15. The method according to claim 13 , wherein the reaction sample is buffered to maintain the pH of the reaction sample from pH 6 to pH 8.5.
16. The method according to claim 13 , wherein the fluorophore is a thioflavin or cyanine T-284.
17. The method according to claim 13 , wherein the reaction sample comprises from 0.01 mg/mL to 10 mg/mL of the alpha-synuclein to act as an aggregation substrate.
18. The method according to claim 13 , wherein the alpha-synuclein is a fragment of full length alpha-synuclein.
19. The method according to claim 13 , wherein the beads in the population of beads of the reaction sample comprise zirconia/silica, glass, quartz, or a polymer selected from the group consisting of polystyrene, polytetrafluoroethylene (PTFE), polymethylmethacrylate (PMMA), and combinations thereof.
20. The method according to claim 13 , wherein the reaction sample comprises from 1 mg to 150 mg of beads per 100 μL of reaction mixture.
21. A method of detecting the presence of alpha-synuclein aggregation in a biological sample, the method comprising steps:
(i) providing a biological sample;
(ii) providing a reaction sample comprising:
(a) 0.5 mm±10% zirconia/silica beads;
(b) 10 μM thioflavin T (ThT); and
(c) 0.1 mg/mL human recombinant full length (1-140aa) alpha-synuclein;
(iii) combining the biological sample and the reaction sample to form a reaction mixture;
(iv) incubating the reaction mixture with intermittent agitation cycles;
(v) illuminating the sample with a wavelength of light that excites the ThT; and
(vi) determining the level of fluorescence of the reaction mixture during incubation,
wherein steps (iv) to (vi) are carried out at the same time, and a significant increase in the fluorescence of the reaction mixture during steps (iv) to (vi) is indicative of the presence of aggregates of alpha-synuclein in the reaction mixture, and wherein the presence of aggregates of alpha-synuclein in the reaction mixture is indicative of the presence of aggregates of alpha-synuclein in the biological sample.
22. The method according to claim 21 , wherein the reaction sample comprises 37±3 mg of the 0.5 mm±10% zirconia/silica beads.
23. The method according to claim 21 , wherein the ThT is present in a concentration of 10 μM.
24. The method according to claim 21 , wherein the reaction sample is buffered to maintain the pH of the reaction sample at pH 8.2.
25. The method according to claim 21 , wherein the reaction sample further comprises 100 mM phosphate buffer.