US 7796815B2
· Muschler et al.
· 2010
[cited by applicant]
US 8068670B2
· Muschler et al.
· 2011
[cited by applicant]
US 9041791B2
· Zahniser
· 2015
[cited by examiner]
US 9068155B2
· Allbritton et al.
· 2015
[cited by applicant]
US 20200080046A1
· Gebhart et al.
· 2020
[cited by applicant]
CN 1556854A
· 2004
[cited by applicant]
CN 1650169A
· 2005
[cited by applicant]
CN 1745179A
· 2006
[cited by applicant]
CN 101923037A
· 2010
[cited by applicant]
CN 104884605A
· 2015
[cited by applicant]
EP 3535441
· 2019
[cited by applicant]
JP 2020524480A
· 2020
[cited by applicant]
WO WO2011103143A1
· 2011
[cited by examiner]
WO WO2017151582A1
· 2017
[cited by applicant]
WO WO2018017892A1
· 2018
[cited by applicant]
Ogunniyi, Adebola O et al. “Screening individual hybridomas by microengraving to discover monoclonal antibodies.” Nature protocols vol. 4,5 (2009): 767-82. doi:10.1038/nprot.2009.40 (Year: 2009).
[cited by examiner]
Wu, Xiaoqiang, et al. “Autofocus methods for automated microscopy.” Biomedical Photonics and Optoelectronic Imaging. Vol. 4224. SPIE, 2000. (Year: 2000).
[cited by examiner]
Japanese Office Action (English Translation) Corresponding to Japanese Patent Application No. 2019-545711 dated Aug. 30, 2021.
[cited by applicant]
Kwee et al., “Integrated Colony Imaging, Analysis, and Selection Device for Regenerative Medicine.” SLAS Technology, vol. 22(2), pp. 217-223 (2017).
[cited by applicant]
Mantripragada et al., “Automated in-process characterization and selection of cell-clones for quality and efficient cell manufacturing.” Cytotechnology, vol. 72, pp. 615-627 (2020).
[cited by applicant]
Gillet et al. “The Clinical Relevance of Cancer Cell Lines,” Commentary, JNCI, vol. 105, Iss. 7, pp. 452-458 (2013).
[cited by applicant]
Jinek et al. “A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity,” Science, vol. 337, pp. 816-821, 2012.
[cited by applicant]
Kovarik et al. “Micro Total Analysis Systems for Cell Biology and Biochemical Assays,” Author manuscript, pp. 1-49, 2013 [published in final edited form as: Anal. Chem. vol. 84, No. 2, pp. 516-540, 2012].
[cited by applicant]
Sterneckert et al. “Investigating human disease using stem cell models,” Nature Reviews Genetics, vol. 15, pp. 625-639 (2014).
[cited by applicant]
Varadarajan et al. “A high-throughput single-cell analysis of human CD8+ T cell functions reveals discordance for cytokine secretion and cytolysis,” The Journal of Clinical Investigation, vol. 121, No. 11, pp. 4322-4331…
[cited by applicant]
Wilding et al. “Cancer Cell Lines for Drug Discovery and Development,” Cancer Research, vol. 74, No. 9, pp. 2377-2384 (2014).
[cited by applicant]
Altman et al., “Phenotypic Analysis of Antigen-Specific T Lymphocytes,” Science, vol. 274, Iss. 5284, pp. 94-96 (1996).
[cited by applicant]
Appay et al., “The assessment of antigen-specific CD8+ T cells through the combination of MHC class I tetramer and intracellular staining,” J Immunol Methods, vol. 268, Iss. 1, pp. 9-19 (2002).
[cited by applicant]
Attayek et al., “An array-based platform to select, release, and capture EBV-infected cells based on intercellular adhesion,” Anal Chem., Author manuscript, available in PMC Jul. 2, 2018, pp. 1-19; published in final ed…
[cited by applicant]
Betts et al., “Sensitive and viable identification of antigen-specific CD8+ T cells by a flow cytometric assay for degranulation,” J. Immunol Methods, vol. 281, Iss. 1-2, pp. 65-78 (2003).
[cited by applicant]
Brent, “An Algorithm with Guaranteed Convergence for Finding a Minimum of a Function of One Variable,” Algorithms for minimization without derivatives, Prentice-Hall, Englewood Cliffs, NJ, pp. 61-80 (1973).
[cited by applicant]
Brochet et al., “IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis,” Nucleic Acids Res, vol. 36, pp. W503-W508 (2008).
[cited by applicant]
Choi et al., “Development and Optimization of a Process for Automated Recovery of Single Cells Identified by Microengraving,” Biotechnol Prog, vol. 26, No. 3, pp. 888-895 (2010).
[cited by applicant]
Czerkinsky et al., “A Solid-Phase Enzyme-Linked Immunospot (ELISPOT) Assay for Enumeration of Specific Antibody-Secreting Cells,” J Immunol Methods, vol. 65, No. 1-2, pp. 109-121 (1983).
[cited by applicant]
Dees et al., “Dendritic cells can be rapidly expanded ex vivo and safely administered in patients with metastatic breast cancer,” Cancer Immunol Immunother, vol. 53, pp. 777-785 (2004).
[cited by applicant]
Ho et al., “In vitro methods for generating CD8+ T-cell clones for immunotherapy from the naive repertoire,” J Immunol Methods, vol. 310, pp. 40-52 (2006).
[cited by applicant]
Hochberg et al., “More Powerful Procedures for Multiple Significance Testing,” Statistics in Medicine, vol. 9, pp. 811-818 (1990).
[cited by applicant]
Linette et al., “Cardiovascular toxicity and titin cross-reactivity of affinity-enhanced T cells in myeloma and melanoma,” Blood, vol. 122, No. 6, pp. 863-871 (2013).
[cited by applicant]
Molldrem et al., “Targeted T-Cell Therapy for Human Leukemia: Cytotoxic T Lymphocytes Specific for a Peptide Derived From Proteinase 3 Preferentially Lyse Human Myeloid Leukemia Cells,” Blood, vol. 88, No. 7, pp. 2450-2…
[cited by applicant]
Mollet et al., “Computer Simulations of the Energy Dissipation Rate in a Fluorescence-Activated Cell Sorter: Implications to Cells,” Biotechnol Bioeng, vol. 100, No. 2, pp. 260-272 (2008).
[cited by applicant]
Ng et al., “Masseter segmentation using an improved watershed algorithm with unsupervised classification,” Comput Biol Med, vol. 38, Iss. 2, pp. 171-184 (2008).
[cited by applicant]
Ogg et al., “Quantitation of HIV-1-Specific Cytotoxic T Lymphocytes and Plasma Load of Viral RNA,” Science, vol. 279, Iss. 5359, pp. 2103-2106 (1998).
[cited by applicant]
Otsu, “A Threshold Selection Method from Gray-Level Histograms,” IEEE Transactions on Systems, Man, and Cybernetics, vol. SMC-9, No. 1, pp. 62-66 (1979).
[cited by applicant]
Pala et al., “Flow cytometric measurement of intracellular cytokines,” J Immunol Methods, vol. 243, Iss. 1-2, pp. 107-124 (2000).
[cited by applicant]
Park et al., “A simple and fast algorithm for K-medoids clustering,” Expert Systems with Applications, vol. 36, Iss. 2, pp. 3336-3341 (2009).
[cited by applicant]
Riddell et al., “The use of anti-CD3 and anti-CD28 monoclonal antibodies to clone and expand human antigen-specific T cells,” J Immunol Methods, vol. 128, Iss. 2, pp. 189-201 (1990).
[cited by applicant]
Taswell, “Limiting Dilution Assays for the Determination of Immunocompetent Cell Frequencies. III. Validity Tests for the Single-Hit Poisson Model,” J Immunol Methods, vol. 72, Iss. 1, pp. 29-40 (1984).
[cited by applicant]
Wang et al., “Micromolded Arrays for Separation of Adherent Cells,” Lab Chip, Author manuscript, available in PMC Nov. 7, 2011, pp. 1-16; published in final edited form as Lab Chip, vol. 10, No. 21, pp. 2917-2924 (2010).
[cited by applicant]
Warren et al., “Therapy of relapsed leukemia after allogeneic hematopoietic cell transplantation with T cells specific for minor histocompatibility antigens,” Blood, vol. 115, No. 19, pp. 3869-3878 (2010).
[cited by applicant]
Shah et al., “Dynamics and evolution of B-catenin-dependent Wnt signaling revealed through massively parallel clonogenic screening,” Integr. Biol., vol. 6, pp. 673-684 (2014).
[cited by applicant]
Shah et al., “Small Sample Sorting of Primary Adherent Cells by Automated Micropallet Imaging and Release,” Cytometry Part A, pp. 642-649 (2014).
[cited by applicant]
Choi et al., “Development and Optimization of a Prcess for Automated Recovery of Single Cells Identified by Microengraving,” Biotechnol. Prog., vol. 26, No. 3, pp. 888-896 (2010).
[cited by applicant]
Kornyei et al., “Cell sorting in a Petri dish controlled by computer vision,” Scientific Reports, vol. 3, pp. 1-10 (2013).
[cited by applicant]
Extended European Search Report corresponding to European Patent Application No. 17873404.2 dated May 18, 2020.
[cited by applicant]
Gracz et al., “A high throughput platform for stem cell-niche co-cultures and downstream gene expression analysis,” Nature Cell Biology, vol. 17, No. 3, pp. 340-349 (2015).
[cited by applicant]
Appay et al., “HIV-specific CD8+ T Cells Produce Antiviral Cytokines but Are Impaired in Cytolytic Function,” J Exp Med, vol. 192, pp. 63-75 (2000).
[cited by applicant]
Arber et al., “Survivin-specific T cell receptor targets tumor but not T cells,” J Clin Invest, vol. 125, No. 1, pp. 157-168 (2015).
[cited by applicant]
Brown et al., “Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival,” Genome Res, vol. 24, pp. 743-750 (2014).
[cited by applicant]
Cameron et al., “Identification of a Titin-Derived HLA-A1-Presented Peptide as a Cross-Reactive Target for Engineered MAGE A3-Directed T Cells,” Author Manuscript, pp. 1-24 [Published in final edited form in Sci Transl …
[cited by applicant]
Carpenter et al., “CellProfiler: image analysis software for identifying and quantifying cell phenotypes,” Genome Biology, vol. 7, No. 10; Article R100, pp. 1-11 (2006).
[cited by applicant]
Chapuis et al., “Transferred WT1-reactive CD8+ T cells can mediate antileukemic activity and persist in post-transplant patients,” Author Manuscript, pp. 1-25 [Published in final edited form in Sci Transl Med, vol. 5, p…
[cited by applicant]
Cong et al. “Multiplex Genome Engineering Using CRISPR/Cas Systems,” Author Manuscript, pp. 1-9 [Published in final edited form in Science, vol. 339, No. 6121, pp. 819-823 (2013)].
[cited by applicant]
Dong et al., “Accurate identification of single nucleotide variants in whole genome amplified single cells,” Author manuscript, pp. 1-14 (2017). [Published in final edited form in: Nature Methods, vol. 14, No. 5, pp. 49…
[cited by applicant]
Dunbar et al., “Direct isolation, phenotyping and cloning of low-frequency antigen-specific cytotoxic T lymphocytes from peripheral blood,” Curr Biol, vol. 8, pp. 413-416 (1998).
[cited by applicant]
Edelstein et al., “Computer control of microscopes using μManager,” Author manuscript, pp. 1-22 [Published in final edited form in Curr Protoc Mol Biol, Chapter 14, Unit14 20 (2010)].
[cited by applicant]
Edelstein et al., “Advanced methods of microscope control using μManager software,” Author manuscript, pp. 1-18 [Published in final edited form in J Biol Methods, vol. 1, No. 2 (2014)].
[cited by applicant]
Gabrilovich et al., “Myeloid-derived-suppressor cells as regulators of the immune system,” Nat Rev Immunol, vol. 9, No. 3, pp. 162-174 (2009).
[cited by applicant]
Gach et al., “Isolation and manipulation of living adherent cells by micromolded magnetic rafts,” Biomicrofluidics, vol. 5, pp. 032002-1-032002-12 (2011).
[cited by applicant]
Gea-Banacloche et al., “Maintenance of Large Numbers of Virus-Specific CD8+ T Cells in HIV-Infected Progressors and Long-Term Nonprogressors,” J Immunol, vol. 165, pp. 1082-1092 (2000).
[cited by applicant]
Gracz et al., “A high throughput platform for stem cell-niche co-cultures and downstream gene expression analysis,” Author manuscript, pp. 1-26 (2015). [Published in final edited form in: Nature Cell Biology, vol. 17, N…
[cited by applicant]
Guillaume et al., “Fluorescence-Activated Cell Sorting and Cloning of Bona Fide CD8+ CTL with Reversible MHC-Peptide and Antibody Fab′ Conjugates,” J Immunol, vol. 177, pp. 3903-3912 (2006).
[cited by applicant]
Hill et al., “Longitudinal Assessment of an ELISPOT Test for
[cited by applicant]
Hunsucker et al., “Peptide/MHC tetramer-based sorting of CD8+ T cells to a leukemia antigen yields clonotypes drawn nonspecifically from an underlying restricted repertoire,” Author manuscript, pp. 1-16, Published in fi…
[cited by applicant]
IPRP with Written Opinion and International Search Report corresponding to International Application No. PCT/US2017/059979 dated May 7, 2019.
[cited by applicant]
Kim et al., “Analysis of the Paired TCR α- and β-chains of Single Human T Cells,” PloS one, vol. 7, Iss. 5, e37338, pp. 1-12 (2012).
[cited by applicant]
Leong et al., “Correction of uneven illumination (vignetting) in digital microscopy images,” J Clin Pathol, vol. 56, pp. 619-621 (2003).
[cited by applicant]
Liadi et al., Cancer immunology research, “Individual Motile CD4+ T Cells Can Participate in Efficient Multikilling through Conjugation to Multiple Tumor Cells,” vol. 3, No. 5, 473-482 (2015).
[cited by applicant]
Malpica et al., “Applying Watershed Algorithms to the Segmentation of Clustered Nuclei,” Cytometry, vol. 28, pp. 289-297 (1997).
[cited by applicant]
Meyer, “Topographic distance and watershed lines,” Signal processing, vol. 38, pp. 113-125 (1994).
[cited by applicant]
Mills, “Regulatory T Cells: Friend or Foe in Immunity to Infection?” Nat Rev Immunol, vol. 4, pp. 841-855 (2004).
[cited by applicant]
Molecular Devices Corporation, “Meta Imaging Series MetaMorph Basic Commands,” Version 7.0.15 Product Manual [online], pp. 228, 238 (2006).
[cited by applicant]
Notice of Publication corresponding to European Patent Application No. 17873404.2 dated Aug. 14, 2019.
[cited by applicant]
Perna et al., “Interleukin 15 Provides Relief to CTLs from Regulatory T Cell-Mediated Inhibition: Implications for Adoptive T Cell-Based Therapies for Lymphoma,” Author Manuscript, pp. 1-21, Published in final edited fo…
[cited by applicant]
Rubio et al., “Ex vivo identification, isolation and analysis of tumor-cytolytic T cells,” Nat Med, vol. 9, No. 11, pp. 1377-1382 (2003).
[cited by applicant]
Seitz et al., “Reconstitution of paired T cell receptor α- and β-chains from microdissected single cells of human inflammatory tissues,” Proc Natl Acad Sci U S A, vol. 103, No. 32, pp. 12057-12062 (2006).
[cited by applicant]
Tran et al., “Immunogenicity of somatic mutations in human gastrointestinal cancers,” Science, , vol. 350, Iss. 6266, pp. 1387-1390 (2015).
[cited by applicant]
Varadarajan et al., “Rapid, efficient functional characterization and recovery of HIV-specific human CD8+ T cells using microengraving,” Proc Natl Acad Sci U S A, vol. 109, No. 10, pp. 3885-3890 (2012).
[cited by applicant]
Welch et al., “Selective single cell isolation for genomics using microraft arrays,” Nucleic Acids Research, vol. 44, No. 17, pp. 8292-8301 (2016).
[cited by applicant]
Wolfl et al., “Antigen-specific activation and cytokine-facilitated expansion of naive, human CD8+ T cells,” Nat Protoc, , vol. 9, No. 4, pp. 950-966 (2014).
[cited by applicant]
Yee et al., Journal of immunology, “Isolation of High Avidity Melanoma-Reactive CTL from Heterogeneous Populations Using Peptide-MHC Tetramers,” vol. 162, No. 4, pp. 2227-2234 (1999).
[cited by applicant]
Decision of Refusal corresponding to Japanese Patent Application No. 2019-545711 dated Feb. 1, 2022.
[cited by applicant]
Meta Imaging Series MetaMorph Drop-in Commands, User's Guide, Molecular Devices, LLC, US, Version 4.6, pp. 1-1160 (2000).
[cited by applicant]
Office Action (Restriction Requirement) corresponding to U.S. Appl. No. 16/570,673 dated Dec. 29, 2021.
[cited by applicant]
Office Action corresponding to Chinese Patent Application No. 2017800817777 dated Apr. 28, 2022.
[cited by applicant]
Office Action corresponding to European Patent Application No. 17873404.2-1001 dated May 18, 2022.
[cited by applicant]
Office Action corresponding to U.S. Appl. No. 16/570,673 dated Aug. 16, 2022.
[cited by applicant]
Chinese Office Action corresponding to Chinese Patent Application No. 2017800817777 dated Sep. 21, 2022.
[cited by applicant]
Office Action corresponding to U.S. Appl. No. 16/570,673 dated Dec. 19, 2022.
[cited by applicant]
Advisory Action and Interview Summary corresponding to U.S. Appl. No. 16/570,673 dated Jun. 13, 2023.
[cited by applicant]
Office Action corresponding to Japanese Patent Application No. 2022-089408 dated Jun. 13, 2023.
[cited by applicant]
Office Action corresponding to Chinese Application No. 201780081777.7 dated Jun. 1, 2023.
[cited by applicant]
Office Action corresponding to Canadian Application No. 3,042,692 dated Aug. 18, 2023.
[cited by applicant]