IP Library Granted Patent US 10,941,134
Granted Patent B2
US 10,941,134 · App. 16/451,613 · Granted Mar 9, 2021

AMPK-activating heterocyclic compounds and methods for using the same

Inventors: Dane Goff (Redwood City, CA); Donald Payan (Hillsborough, CA); Rajinder Singh (Belmont, CA); Simon Shaw (Oakland, CA); David Carroll (San Francisco, CA); Yasumichi Hitoshi (Brisbane, CA)
Assignee: Rigel Pharmaceuticals, Inc.
C07D401/14C07D213/56C07D213/81C07D213/82C07D401/04C07D401/06C07D401/12C07D405/12C07D405/14C07D409/12C07D409/14C07D413/14C07D417/14C07D451/06C07D471/10C07D487/04C07D495/04C07B2200/07
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Quick Facts
Patent No.
US 10,941,134
App. No.
16/451,613
Granted
Mar 9, 2021
Kind
B2
Abstract

Disclosed are substituted pyridine compounds as well as pharmaceutical compositions and methods of use. One embodiment is a compound having the structure wherein E, J, T, the ring system denoted by “B”, T, R 3 , R 4 , w and x are as described herein. In certain embodiments, a compound disclosed herein activates the AMPK pathway, and can be used to treat metabolism-related disorders and conditions.

Claims (76)

1. A compound having the structural formula

or a pharmaceutically acceptable salt, prodrug, or N-oxide thereof, wherein

0 or 1 of D 1 , D 2 and D 3 is N, with the others independently being CH or C substituted by J or one of the w R 3 ;

E is —R 2 , —C(O)NR 1 R 2 , —NR 1 R 2 or —NR 1 C(O)R 2 , in which R 1 and R 2 together with the nitrogen to which they are bound form Hca, or R 1 is H, —(C 1 -C 4 alkyl), —C(O)—(C 1 -C 4 alkyl) or —C(O)O—(C 1 -C 4 alkyl), and R 2 is —C(O)Hca, —(C 0 -C 3 alkyl)-Ar, —(C 0 -C 3 alkyl)-Het, —(C 0 -C 3 alkyl)-Cak or —(C 0 -C 3 alkyl)-Hca;

each R 3 is independently selected from —(C 1 -C 6 alkyl), —(C 1 -C 6 haloalkyl), —(C 0 -C 6 alkyl)-Ar, —(C 0 -C 6 alkyl)-Het, —(C 0 -C 6 alkyl)-Cak, —(C 0 -C 6 alkyl)-Hca, —(C 0 -C 6 alkyl)-L-R 7 , —(C 0 -C 6 alkyl)-NR 8 R 9 , —(C 0 -C 6 alkyl)-OR 10 , —(C 0 -C 6 alkyl)-C(O)R 10 , —(C 0 -C 6 alkyl)-S(O) 0-2 R 10 , -halogen, —NO 2 and —CN;

w is 0, 1, 2 or 3;

each R 4 is independently selected from —(C 1 -C 6 alkyl), —(C 1 -C 6 haloalkyl), —(C 0 -C 6 alkyl)-Ar, —(C 0 -C 6 alkyl)-Het, —(C 0 -C 6 alkyl)-Cak, —(C 0 -C 6 alkyl)-Hca, —(C 0 -C 6 alkyl)-L-R 7 , —(C 0 -C 6 alkyl)-NR 8 R 9 , —(C 0 -C 6 alkyl)-OR 10 , —(C 0 -C 6 alkyl)-C(O)R 10 , —(C 0 -C 6 alkyl)-S(O) 0-2 R 10 , -halogen, —NO 2 and —CN, and two R 4 on the same carbon optionally combine to form oxo, and two R 4 on different carbons optionally combine to form a —(C 0 -C 4 alkylene)- bridge;

x is 0, 1, 2, 3 or 4;

J is absent, —C(O)—, —NR 13 —, —NR 13 C(O)- or —C(O)NR 13 —, in which R 13 is selected from —H, —(C 1 -C 4 alkyl), —C(O)—(C 1 -C 4 alkyl) and —C(O)O—(C 1 -C 4 alkyl);

the ring system denoted by “B” is absent, arylene, heteroarylene,

wherein

each of Y 1 and Y 2 is N, C or CH, provided that at least one of Y and Y 2 is N; p is 0, 1, 2, 3 or 4, q is 1, 2, 3 or 4, and the sum of p and q is 1, 2, 3, 4, 5 or 6, or

wherein Y 1 is N or C and Y 2 is N, C or CH, provided that at least one of Y 1 and Y 2 is N, the ring system denoted by “C” is an arylene or a heteroarylene, p is 0, 1, 2, 3 or 4, q is 1, 2, 3 or 4, and the sum of p and q is 1, 2, 3, 4, 5 or 6;

T is H, —(C 1 -C 6 alkyl), —(C 1 -C 6 alkyl)-R 23 in which R 23 is Het or Ar and in which one or more non-adjacent carbons of the alkyl is optionally replaced by —O— or —S—, —(C 0 -C 6 alkyl)-L-R 7 , —(C 0 -C 6 alkyl)-NR 8 R 9 , —(C 0 -C 6 alkyl)-OR 10 , —(C 0 -C 6 alkyl)-C(O)R 10 , —(C 0 -C 6 alkyl)-S(O) 0-2 R 10 or

wherein

Q is —O—(C 0 -C 3 alkyl)-, —S(O) 2 —, -L- or (C 0 -C 3 alkyl)-, in which each carbon of the —(C 0 -C 3 alkyl)- is optionally and independently substituted with one or two R 16 , in which each R 16 is independently selected from —(C 1 -C 6 alkyl), —(C 1 -C 6 haloalkyl), —(C 0 -C 6 alkyl)-Ar, —(C 0 -C 6 alkyl)-Het, —(C 0 -C 6 alkyl)-Cak, —(C 0 -C 6 alkyl)-Hca, —(C 0 -C 6 alkyl)-L-R 7 , —(C 0 -C 6 alkyl)-NR 8 R 9 , —(C 0 -C 6 alkyl)-OR 10 , —(C 0 -C 6 alkyl)-C(O)R 10 , —(C 0 -C 6 alkyl)-S(O) 0-2 R 10 , -halogen, —NO 2 and —CN, and optionally two of R 16 on the same carbon combine to form oxo;

the ring system denoted by “A” is heteroaryl, aryl, cycloalkyl or heterocycloalkyl;

each R 5 is independently selected from —(C 1 -C 6 alkyl), —(C 1 -C 6 haloalkyl), —(C 0 -C 6 alkyl)-Ar, —(C 0 -C 6 alkyl)-Het, —(C 0 -C 6 alkyl)-Cak, —(C 0 -C 6 alkyl)-Hca, —(C 0 -C 6 alkyl)-L-R 7 , —(C 0 -C 6 alkyl)-NR 8 R 9 , —(C 0 -C 6 alkyl)-OR 10 , —(C 0 -C 6 alkyl)-C(O)R 10 , —(C 0 -C 6 alkyl)-S(O) 0-2 R 10 , -halogen, N 3 , —SF 5 , —NO 2 and —CN; and

y is 0, 1, 2, 3 or 4;

in which

each L is independently selected from —NR 9 C(O)O—, —OC(O)NR 9 —, —NR 9 C(O)—NR 9 —, —NR 9 C(O)S—, —SC(O)NR 9 —, —NR 9 C(O)—, —C(O)—NR 9 —, —NR 9 C(S)O—, —OC(S)NR 9 —, —NR 9 C(S)—NR 9 —, —NR 9 C(S)S—, —SC(S)NR 9 —, —NR 9 C(S)—, —C(S)NR 9 —, —SC(O)NR 9 —, —NR 9 C(S)—, —S(O) 0-2 —, —C(O)O, —OC(O)—, —C(S)O—, —OC(S)—, —C(O)S—, —SC(O)—, —C(S)S—, —SC(S)—, —OC(O)O—, —SC(O)O—, —OC(O)S—, —SC(S)O—, —OC(S)S—, —NR 9 C(NR 9 )NR 9 —, —NR 9 SO 2 —, —SO 2 NR 9 — and —NR 9 SO 2 NR 9 —,

each R 6 , R 7 , R 8 and R 10 is independently selected from H, —(C 1 -C 6 alkyl), —(C 1 -C 6 haloalkyl), —(C 0 -C 6 alkyl)-Ar, —(C 0 -C 6 alkyl)-Het, —(C 0 -C 6 alkyl)-Cak, —(C 0 -C 6 alkyl)-Hca, —(C 0 -C 6 alkyl)-L-(C 0 -C 6 alkyl), —(C 0 -C 6 alkyl)-NR 9 —(C 0 -C 6 alkyl), —(C 0 -C 6 alkyl)-O—(C 0 -C 6 alkyl), —(C 0 -C 6 alkyl)-C(O)—(C 0 -C 6 alkyl) and —(C 0 -C 6 alkyl)-S(O) 0-2 —(C 0 -C 6 alkyl),

each R 9 is independently selected from —H, —(C 1 -C 4 alkyl), —C(O)—(C 1 -C 4 alkyl) and —C(O)O—(C 1 -C 4 alkyl),

each Ar is an optionally substituted aryl,

each Het is an optionally substituted heteroaryl,

each Cak is an optionally substituted cycloalkyl,

each Hca is an optionally substituted heterocycloalkyl, and

each alkyl is optionally substituted.

2. The compound according to claim 1 , having the structural formula

or a pharmaceutically acceptable salt-or N-oxide thereof, wherein

R 1 is H, —(C 1 -C 4 alkyl), —C(O)—(C 1 -C 4 alkyl) or —C(O)O—(C 1 -C 4 alkyl);

G is —CH 2 —, —C(O)—, —S(O) 2 —, —CH(CH 3 )—, —C(CH 3 ) 2 —, —O—, —C(O)—NH—, —C(O)—NH—CH 2 —, —CH 2 CH 2 —, a single bond, —OCH 2 —, CH 2 CH 2 O—, —CH(COOMe)- or —CH(COOEt)-;

R 17 is aryl or heteroaryl, optionally substituted with 1, 2 or 3 substituents independently selected from —(C 1 -C 3 alkyl), —(C 1 -C 3 haloalkyl), —(C 0 -C 3 alkyl)-L-R 7 , —(C 0 -C 3 alkyl)-NR 8 R 9 , —(C 0 -C 3 alkyl)-OR 10 , —(C 0 -C 3 alkyl)-C(O)R 10 , —(C 0 -C 3 alkyl)-S(O) 0-2 R 10 , —N 3 , —SF 5 , -halogen, —NO 2 and —CN;

each R 3 is independently selected from —(C 1 -C 3 alkyl), —(C 1 -C 3 haloalkyl), —(C 0 -C 3 alkyl)-L-R 7 , —(C 0 -C 3 alkyl)-NR 8 R 9 , —(C 0 -C 3 alkyl)-OR 10 , —(C 0 -C 3 alkyl)-C(O)R 10 , —(C 0 -C 3 alkyl)-S(O) 0-2 R 10 , -halogen, —NO 2 and —CN;

w is 0, 1, 2 or 3;

Q is a single bond, —CH 2 —, —CH 2 O—, —OCH 2 CH 2 —, —CH 2 CH 2 —, —O—, —CHF—, —CH(CH 3 )—, —C(CH 3 ) 2 —, —CH(OH)—, —CH(COOMe)-, —CH(COOEt)-, —C(O)— or —S(O) 2 —;

the ring system denoted by “A” is monocyclic heteroaryl or phenyl;

each R 5 is independently selected from —(C 1 -C 3 alkyl), —(C 1 -C 3 haloalkyl), —(C 0 -C 3 alkyl)-L-R 7 , —(C 0 -C 3 alkyl)-NR 8 R 9 , —(C 0 -C 3 alkyl)-OR 10 , —(C 0 -C 3 alkyl)-C(O)R 10 , —(C 0 -C 3 alkyl)-S(O) 0-2 R 1 , -halogen, —N 3 , —SF 5 , —NO 2 and —CN; and

y is 0, 1, 2, 3 or 4;

in which

each L is independently selected from —NR 9 C(O)O—, —OC(O)NR 9 —, —NR 9 C(O)—NR 9 —, —NR 9 C(O)S—, —SC(O)NR 9 —, —NR 9 C(O)—, —C(O)—NR 9 —, —NR 9 C(S)O—, —OC(S)NR 9 —, —NR 9 C(S)—NR 9 —, —NR 9 C(S)S—, —SC(S)NR 9 —, —NR 9 C(S)—, —C(S)NR 9 —, —SC(O)NR 9 —, —NR 9 C(S)—, —S(O) 0-2 —, —C(O)O, —OC(O)—, —C(S)O—, —OC(S)—, —C(O)S—, —SC(O)—, —C(S)S—, —SC(S)—, —OC(O)O—, —SC(O)O—, —OC(O)S—, —SC(S)O—, —OC(S)S—, —NR 9 C(NR 9 )NR 9 —, —NR 9 SO 2 —, —SO 2 NR 9 — and —NR 9 SO 2 NR 9 —,

each R 7 , R 8 and R 10 is independently selected from H, —(C 1 -C 2 alkyl), —(C 1 -C 2 haloalkyl), —(C 0 -C 2 alkyl)-L-(C 0 -C 2 alkyl), —(C 0 -C 2 alkyl)-NR 9 (C 0 -C 2 alkyl), —(C 0 -C 2 alkyl)-O—(C 0 -C 2 alkyl), —(C 0 -C 2 alkyl)-C(O)—(C 0 -C 2 alkyl) and —(C 0 -C 2 alkyl)-S(O) 0-2 —(C 0 -C 2 alkyl), and

each R 9 is independently selected from —H, —(C 1 -C 4 alkyl), —C(O)—(C 1 -C 4 alkyl) and —C(O)O—(C 1 -C 4 alkyl).

3. The compound according to claim 2 , wherein Y 1 is N.

4. The compound according to claim 2 , wherein Y 1 is CH.

5. The compound according to claim 3 , wherein Q is —O—.

6. The compound according to claim 2 , wherein Q is —C(O)—, —S(O) 2 —, —CH 2 — or a single bond.

7. The compound according to claim 2 , wherein the

group is

monocyclic heteroaryl substituted with 0, 1 or 2 R 30 ; or monocyclic heteroarylmethyl-, in which the heteroaryl is substituted with 0, 1 or 2 R 30 ; in which each R 30 is independently selected from —F, —Cl, —Br, —C(O)—NH 2 , C(O)N(C 1 -C 4 alkyl)(C 1 -C 2 alkyl), NHCO(C 1 -C 2 alkyl), N(C 1 -C 4 alkyl)(C 1 -C 2 alkyl), NH 2 , —SH, methyl, ethyl, trifluoromethyl, methoxy, ethoxy, trifluoromethoxy, —NO 2 , —SF 5 , —N 3 , —(NH) 0-1 SO 2 R 33 , —(NH) 0-1 COR 33 and cyano, in which each R 33 is (C 1 -C 2 alkyl) or (C 1 -C 2 haloalkyl).

8. The compound according to claim 2 , wherein each R 3 is independently selected from methyl, ethyl, n-propyl, isopropyl, trifluoromethyl, pentafluoroethyl, acetyl, —NH 2 , —OH, methoxy, ethoxy, trifluoromethoxy, —SO 2 Me, -halogen, —NO 2 and —CN.

9. The compound according to claim 2 , wherein w is 0.

10. The compound according to claim 2 , having the structural formula

11. The compound according to claim 2 , having the structural formula

12. The compound according to claim 2 , wherein G is —CH 2 — or —C(O)—.

13. The compound according to claim 2 , wherein R 17 is phenyl substituted with 0, 1 or 2 R 30 , and the

moiety is phenyl substituted with 0, 1 or 2 R 30 , wherein each R 30 is independently selected from halogen, (C 1 -C 2 alkoxy), —(C 1 -C 2 haloalkoxy), —SH, —S(C 1 -C 2 alkyl), —S(C 1 -C 2 haloalkyl), —OH, —CN, —NO 2 , —NH 2 , —NH(C 1 -C 4 alkyl), —N(C 1 -C 4 alkyl)(C 1 -C 2 alkyl), —N 3 , —SF 5 , —C(O)—NH 2 , C(O)NH(C 1 -C 4 alkyl), C(O)N(C 1 -C 4 alkyl)(C 1 -C 2 alkyl), —C(O)OH, C(O)O(C 1 -C 2 alkyl), —(NH) 0-1 SO 2 R 33 , —(NH) 0-1 COR 33 , in which each R 33 is (C 1 -C 2 alkyl) or (C 1 -C 2 haloalkyl).

14. The compound according to claim 2 , wherein the -G-R 17 moiety is

monocyclic heteroaryl substituted with 0, 1 or 2 R 30 ; monocyclic heteroarylmethyl- in which the heteroaryl is substituted with 0, 1 or 2 R 30 ; or monocyclic heteroaryloxy- in which the heteroaryl is substituted with 0, 1 or 2 R 30 ; in which each R 30 is independently selected from halogen, (C 1 -C 2 alkoxy), —(C 1 -C 2 haloalkoxy), —SH, —S(C 1 -C 2 alkyl), —S(C 1 -C 2 haloalkyl), —OH, —CN, —NO 2 , —NH 2 , —NH(C 1 -C 4 alkyl), —N(C 1 -C 4 alkyl)(C 1 -C 2 alkyl), —C(O)—NH 2 , C(O)NH(C 1 -C 4 alkyl), C(O)N(C 1 -C 4 alkyl) 2 , —C(O)OH, C(O)O(C 1 -C 2 alkyl), —(NH) 0-1 SO 2 R 33 , —(NH) 0-1 COR 33 , in which each R 33 is (C 1 -C 2 alkyl) or (C 1 -C 2 haloalkyl).

15. The compound according to claim 2 , wherein

G is —CH 2 —, —C(O)—, or —S(O) 2 —;

R 17 is phenyl or monocyclic heteroaryl substituted with 0, 1 or 2 R 3 ;

each R 3 is independently selected from methyl, ethyl, n-propyl, isopropyl, trifluoromethyl, pentafluoroethyl, acetyl, —NH 2 , —OH, methoxy, ethoxy, trifluoromethoxy, —SO 2 Me, -halogen, —NO 2 and —CN;

w is 0 or 1;

Y 1 is N or CH;

Q is a single bond, —CH 2 —, —O—, —C(O)— or —S(O) 2 —;

the ring system denoted by “A” is phenyl or monocyclic heteroaryl; and

y is 0, 1, 2 or 3;

in which

each R 5 and R 30 is independently selected from halogen, (C 1 -C 2 alkoxy), —(C 1 -C 2 Haloalkoxy), —SH, —S(C 1 -C 2 alkyl), —S(C 1 -C 2 haloalkyl), —OH, —CN, —NO 2 , —NH 2 , —NH(C 1 -C 4 alkyl), —N(C 1 -C 4 alkyl)(C 1 -C 2 alkyl), —N 3 , —SF 5 , —C(O)—NH 2 , C(O)NH(C 1 -C 4 alkyl), C(O)N(C 1 -C 4 alkyl)(C 1 -C 2 alkyl), —C(O)OH, C(O)O(C 1 -C 2 alkyl), —(NH) 0-1 SO 2 R 33 , —(NH) 0-1 COR 33 , in which each R 33 is (C 1 -C 2 alkyl) or (C 1 -C 2 haloalkyl).

16. A method comprising

contacting a cell with an amount of a compound according to claim 1 or a pharmaceutically acceptable salt or N-oxide thereof.

17. The method of claim 16 , wherein the amount is an amount effective to activate the AMPK pathway in the cell.

18. The method of claim 16 , wherein the cell is in a subject and contacting the cell with the amount of the compound or pharmaceutically acceptable salt or N-oxide thereof comprises administering to the subject the amount of the compound or pharmaceutically acceptable salt or N-oxide thereof.

19. The method of claim 18 , wherein the amount is an amount effective to treat B type II diabetes in the subject, treat atherosclerosis or cardiovascular disease in the subject, or treat intermittent claudication in the subject.

20. The method of claim 18 , wherein the amount is an amount effective to improve exercise efficiency in the subject.

Assignments (2)
SECURITY INTEREST Recorded Aug 25, 2022
From: RIGEL PHARMACEUTICALS, INC.
To: MIDCAP FINANCIAL TRUST
Reel/Frame 061327/0712 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 25, 2019
From: GOFF, DANE; PAYAN, DONALD; SINGH, RAJINDER; SHAW, SIMON; CARROLL, DAVID; HITOSHI, YASUMICHI
To: RIGEL PHARMACEUTICALS, INC.
Reel/Frame 049580/0132 →
Continuity (8)
Continuation 15603023 · May 23, 2017
Division 14993936 · Jan 12, 2016
Division 14325766 · Jul 8, 2014
Division 13194810 · Jul 29, 2011
Division 13800986 · Mar 13, 2013
Continuation 13194810 · Jul 29, 2011
Provisional Application 61368928 · Jul 29, 2010
Related Publication 20200017465A1 · Jan 16, 2020
Cited By (8)
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