IP Library › Granted Patent US 11,242,317
Granted Patent B2
US 11,242,317 · App. 16/519,590 · Granted Feb 8, 2022

EBNA1 inhibitors and their method of use

Inventors: Troy E. Messick (Upper Darby, PA); Garry R. Smith (Royersford, PA); Allen B. Reitz (Lansdale, PA); Paul M. Lieberman (Wynnewood, PA); Mark E. McDonnell (Lansdale, PA); Yan Zhang (Fort Washington, PA); Venkata Velvadapu (Ankeny, IA)
Assignee: The Wistar Institute of Anatomy and Biology
C07D207/327A61K31/192A61K31/404A61K31/44A61K31/4439A61K31/496C07C53/18C07C63/66C07C65/19C07C65/28C07C211/27C07C217/84C07C229/56C07C229/64C07C233/11C07C233/64C07C233/65C07C235/58C07C255/54C07C255/55C07C311/08C07C311/16C07C311/17C07C317/14C07C317/44C07D207/08C07D207/12C07D207/14C07D207/16C07D209/08C07D211/70C07D213/55C07D213/64C07D213/74C07D215/14C07D231/12C07D235/06C07D239/26C07D249/06C07D277/30C07D295/155C07D307/79C07D333/54C07D401/04C07D401/10C07D403/10C07D409/10C07D417/10C07D471/04C07D487/04C07C2601/02
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 11,242,317
App. No.
16/519,590
Granted
Feb 8, 2022
Kind
B2
Abstract

Pharmaceutical compositions of the invention comprise EBNA1 inhibitors useful for the treatment of diseases caused by EBNA1 activity such as cancer, infectious mononucleosis, chronic fatigue syndrome, multiple sclerosis, systemic lupus erythematosus and rheumatoid arthritis. Pharmaceutical compositions of the invention also comprise EBNA1 inhibitors useful for the treatment of diseases caused by latent Epstein-Barr Virus (EBV) infection. Pharmaceutical compositions of the invention also comprise EBNA1 inhibitors useful for the treatment of diseases caused by lytic Epstein-Barr Virus (EBV) infection.

Claims (128)

1. A compound of formula (IX):

or a hydrate, solvate, or pharmaceutically acceptable salt,

wherein:

R 1 is selected from the group consisting of optionally substituted phenyl,

R 2 is selected from the group consisting of optionally substituted phenyl,

R 3 is CO 2 R 4d ;

R 4d is selected from the group consisting of hydrogen, C 1-6 linear alkyl, and C 3-6 branched alkyl;

R 8a , R 8b , R 8c , and R 8d are each independently selected from the group consisting of hydrogen, C 1-6 linear alkyl, and C 3-6 branched alkyl;

R 9a , R 9b , R 9c , and R 9d are each independently selected from the group consisting of hydrogen, C 1-6 linear alkyl, and C 3-6 branched alkyl;

L 2 is (CH 2 ) m ; and

m is 0;

wherein each phenyl is independently optionally substituted with at least one substituent independently selected from the group consisting of halogen, —CN, —OR 10 , —NR 10 C(═O)R 10 , —S(═O) 2 R 10 , —S(═O) 2 OR 10 , —S(═O) 2 N(R 10 ) 2 , —C(═O)R 10 , —C(═O)OR 10 , —C(═O)N(R 10 ) 2 , C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 alkoxy, C 3-14 cycloalkyl, and phenyl,

wherein each occurrence of R 10 is independently selected from the group consisting of hydrogen, C 1-6 alkyl, C 1-6 haloalkyl, C 3-6 cycloalkyl, and phenyl, or two R 10 units taken together with the atom(s) to which they are bound form a 3-7 membered ring.

2. The compound of claim 1 , wherein R 4d is selected from the group consisting of hydrogen, C 1-6 linear alkyl, and C 3-6 branched alkyl.

3. The compound of claim 1 , wherein R 4d is hydrogen.

4. A composition comprising at least one compound of claim 1 and at least one pharmaceutically acceptable excipient.

5. A method for treating or ameliorating a disease caused by EBNA1 activity, wherein the disease is infectious mononucleosis, chronic fatigue syndrome, multiple sclerosis, systemic lupus erythematosus, or rheumatoid arthritis, the method comprising administering to a subject a therapeutically effective amount of at least one compound of claim 1 .

6. A method for treating and ameliorating a cancer caused by EBNA1 activity, the method comprising administering to a subject a therapeutically effective amount of at least one compound of claim 1 .

7. The method of claim 6 , wherein the cancer is nasopharyngeal carcinoma, gastric carcinomas, non-Hodgkin's lymphoma, anaplastic large-cell lymphoma, angioimmunoblastic T-cell lymphoma, hepatosplenic T-cell lymphoma, B-cell lymphoma, Burkitt's lymphoma, reticuloendotheliosis, reticulosis, microglioma, diffuse large B-cell lymphoma, extranodal T/NK lymphoma/angiocentric lymphoma, follicular lymphoma, immunoblastic lymphoma, mucosa-associated lymphatic tissue lymphoma, B-cell chronic lymphocytic leukemia, mantle cell lymphoma, mediastinal large B cell lymphoma, lymphoplasmactic lymphoma, nodal marginal zone B cell lymphoma, splenic marginal zone lymphoma, intravascular large B-cell lymphoma, primary effusion lymphoma, lyphomatoid granulomatosis, angioimmunoblastic lymphadenopathy, leiomyosarcomas, X-linked lymphoproliferative disease, post-transplant lymphoproliferative disorders, Hodgkin's lymphoma, or breast cancer.

8. A method for treating or ameliorating Epstein-Barr Virus infection, the method comprising administering to a subject a therapeutically effective amount of at least one compound of claim 1 .

9. The method of claim 8 , wherein the Epstein-Barr Virus infection is lytic or latent.

10. A compound selected from the group consisting of:

3-{2-[3-(methylsulfamoyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1H-indol-3-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(3-methanesulfonamidophenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

2-(1H-pyrrol-1-yl)-3-[2-(3-sulfamoylphenyl)ethynyl]benzoic acid;

3-[2-(3-carbamoylphenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-(2-{imidazo[1,2-a]pyridin-6-yl}ethynyl)-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(2-hydroxypyridin-4-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1H-indazol-6-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-{2-[3-(3,3-dimethyl-2-oxoazetidin-1-yl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

3-(2-{3-[(2-carboxy-2,2-dimethylethyl)amino]phenyl}ethynyl)-2-(1H-pyrrol-1-yl)benzoic acid;

3-(2-{imidazo[1,2-a]pyrazin-3-yl}ethynyl)-2-(1H-pyrrol-1-yl)benzoic acid;

3-(2-{imidazo[1,2-a]pyridin-3-yl}ethynyl)-2-(1H-pyrrol-1-yl)benzoic acid;

3-(2-{imidazo[1,2-a]pyridin-5-yl}ethynyl)-2-(1H-pyrrol-1-yl)benzoic acid;

2-(1H-pyrrol-1-yl)-3-(2-{1H-pyrrolo[2,3-b]pyridin-5-yl}ethynyl)benzoic acid;

3-[2-(1-methyl-1H-indol-4-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1-methyl-1H-indol-5-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1-benzothiophen-6-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1H-indol-7-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-{2-[2-(hydroxymethyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

3-{2-[4-(hydroxymethyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

2-(2,5-dimethyl-1H-pyrrol-1-yl)-3-[2-(4-methylphenyl)ethynyl]benzoic acid;

2-(2,5-dimethyl-1H-pyrrol-1-yl)-3-[2-(3-hydroxyphenyl)ethynyl]benzoic acid;

3-[2-(2,3-dihydro-1H-indol-6-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1-methyl-1H-pyrazol-4-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1,2-dimethyl-1H-imidazol-4-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1-methyl-1H-imidazol-5-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1-methyl-1H-imidazol-2-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

2-(1H-pyrrol-1-yl)-3-[2-(1,3-thiazol-5-yl)ethynyl]benzoic acid;

2-(1H-pyrrol-1-yl)-3-[2-(1,3-thiazol-4-yl)ethynyl]benzoic acid;

2-(1H-pyrrol-1-yl)-3-(2-{1H-pyrrolo[2,3-b]pyridin-6-yl} ethynyl)benzoic acid;

3-{2-[3-(2-hydroxypropan-2-yl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

2-(1H-pyrrol-1-yl)-3-(2-{1H-pyrrolo[2,3-b]pyridin-3-yl}ethynyl)benzoic acid;

3-[2-(1H-indol-4-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

2-(1H-pyrrol-1-yl)-3-(2-{[1,2,4]triazolo[1,5-a]pyridin-7-yl} ethynyl)benzoic acid;

3-{2-[3-(dimethylsulfamoyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(3-fluoro-5-hydroxyphenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-{2-[3-(hydroxymethyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(5-hydroxypyridin-3-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1H-1,3-benzodiazol-5-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1H-indol-5-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(1H-indol-6-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(4-methylphenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(3,5-difluorophenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-{2-[3-(difluoromethoxy)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

2-(2,5-dimethyl-1H-pyrrol-1-yl)-3-(2-phenylethynyl)benzoic acid;

3-(2-{imidazo[1,2-a]pyrazin-6-yl}ethynyl)-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(3-hydroxyphenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(4-methoxyphenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(pyridin-4-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(pyridin-3-yl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(3-methoxyphenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-[2-(4-fluorophenyl)ethynyl]-2-(1H-pyrrol-1-yl)benzoic acid;

3-(2-phenylethynyl)-2-(1H-pyrrol-1-yl)benzoic acid;

3-[3-(1H-imidazol-1-yl)prop-1-yn-1-yl]-2-(1H-pyrrol-1-yl)benzoic acid;

2-{4-[(dimethylamino)methyl]phenyl}-3-(2-phenylethynyl)benzoic acid;

2-(4-methanesulfonylphenyl)-3-(2-phenylethynyl)benzoic acid;

2-(4-methoxyphenyl)-3-(2-phenylethynyl)benzoic acid;

2-(3-methoxyphenyl)-3-(2-phenylethynyl)benzoic acid;

2-(2-methoxyphenyl)-3-(2-phenylethynyl)benzoic acid;

2-phenyl-3-(2-phenylethynyl)benzoic acid;

2-(4-methylphenyl)-3-(2-phenylethynyl)benzoic acid;

2-[3-(hydroxymethyl)phenyl]-3-(2-phenylethynyl)benzoic acid;

2-[4-(hydroxymethyl)phenyl]-3-(2-phenylethynyl)benzoic acid;

2-(3-methanesulfonamidophenyl)-3-(2-phenylethynyl)benzoic acid;

2-{2-[(2-hydroxyethyl)sulfamoyl]phenyl}-3-(2-phenylethynyl)benzoic acid;

2-[4-(cyclopropylcarbamoyl)phenyl]-3-(2-phenylethynyl)benzoic acid;

2-(dimethyl-1,2-oxazol-4-yl)-3-(2-phenylethynyl)benzoic acid;

3-(3-{[3-(1H-imidazol-1-yl)propyl]amino}prop-1-yn-1-yl)-2-phenylbenzoic acid;

3-{2-[3-(aminomethyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

3-{2-[3-(3,5-difluorobenzenesulfonamidomethyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

3-{2-[3-(cyclopropanesulfonamidomethyl)phenyl]ethynyl}-2-(1H-pyrrol-1-yl)benzoic acid;

2-(3-methoxyphenyl)-3-(2-{1H-pyrrolo [2,3-b]pyridin-3-yl}ethynyl)benzoic acid;

2-(3-methoxyphenyl)-3-[2-(1,3-thiazol-4-yl)ethynyl]benzoic acid;

2-[4-(dimethylamino)phenyl]-3-[2-(pyridin-4-yl)ethynyl]benzoic acid;

2-phenyl-3-[2-(pyridin-4-yl)ethynyl]benzoic acid;

3′-hydroxy-4′-methoxy-6-pyridin-4-ylethynyl-biphenyl-2-carboxylic acid;

5′-hydroxy-3′-methoxy-6-pyridin-4-ylethynyl-biphenyl-2-carboxylic acid;

2-(3,5-dimethyl-isoxazol-4-yl)-3-pyridin-4-ylethynyl-benzoic acid;

2-(2,5-dimethyl-pyrrol-1-yl)-3-pyridin-4-ylethynyl-benzoic acid;

3-(3-carbamoyl-phenylethynyl)-2-(2,5-dimethyl-pyrrol-1-yl)-benzoic acid;

3-(3-carboxy-phenylethynyl)-2-(2,5-dimethyl-pyrrol-1-yl)-benzoic acid;

2-(2,5-dimethyl-pyrrol-1-yl)-3-(3-hydroxymethyl-phenyl ethynyl)-benzoic acid;

2-(2,5-dimethyl-pyrrol-1-yl)-3-(1H-pyrrolo[2,3-b]pyridin-3-ylethynyl)-benzoic acid;

3-(3-acetylamino-phenylethynyl)-2-(2,5-dimethyl-pyrrol-1-yl)-benzoic acid;

2-(2,5-dimethyl-pyrrol-1-yl)-3-(3-methoxy-phenylethynyl)-benzoic acid;

4′-dimethylaminomethyl-6-phenylethynyl-biphenyl-2-carboxylic acid;

4′-Amino-6-((3-hydroxyphenyl)ethynyl)-5′-methoxybiphenyl-2-carboxylic acid;

5′-acetamido-6-(phenylethynyl)biphenyl-2-carboxylic acid;

2-(4-methylphenyl)-3-[2-(pyridin-4-yl)ethynyl]benzoic acid;

3-[2-(3-hydroxyphenyl)ethynyl]-2-(4-methyl phenyl)benzoic acid;

3-[2-(3-hydroxyphenyl)ethynyl]-2-(3-methanesulfonamidophenyl) benzoic acid;

2-(3-carbamoylphenyl)-3-[2-(3-hydroxyphenyl)ethynyl]benzoic acid;

2-(3-hydroxyphenyl)-3-[2-(3-hydroxyphenyl)ethynyl]benzoic acid;

2-(3-chloro-5-hydroxyphenyl)-3-[2-(pyridin-4-yl)ethynyl] benzoic acid;

2-(3-fluoro-5-hydroxyphenyl)-3-[2-(pyridin-4-yl)ethynyl]benzoic acid;

2-(3,5-dimethoxyphenyl)-3-[2-(pyridin-4-yl)ethynyl] benzoic acid;

3-[2-(3-hydroxyphenyl)ethynyl]-2-(2-phenoxyphenyl) benzoic acid;

2-(3,5-dimethoxyphenyl)-3-[2-(3-hydroxyphenyl) ethynyl]benzoic acid;

or a pharmaceutically acceptable salt, carboxylic ester, or solvate thereof.

11. The compound of claim 10 , wherein the carboxylic ester is selected from the group consisting of methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, iso-butyl, and tert-butyl.

12. A composition comprising at least one compound of claim 10 and at least one pharmaceutically acceptable excipient.

13. A method for treating and ameliorating a disease caused by EBNA1 activity, wherein the disease is infectious mononucleosis, chronic fatigue syndrome, multiple sclerosis, systemic lupus erythematosus, or rheumatoid arthritis, the method comprising administering to a subject a therapeutically effective amount of at least one compound of claim 10 .

14. A method for treating or ameliorating a cancer caused by EBNA1 activity, the method comprising administering to a subject a therapeutically effective amount of at least one compound of claim 10 .

15. The method of claim 14 , wherein the cancer is nasopharyngeal carcinoma, gastric carcinomas, non-Hodgkin's lymphoma, anaplastic large-cell lymphoma, angioimmunoblastic T-cell lymphoma, hepatosplenic T-cell lymphoma, B-cell lymphoma, Burkitt's lymphoma, reticuloendotheliosis, reticulosis, microglioma, diffuse large B-cell lymphoma, extranodal T/NK lymphoma/angiocentric lymphoma, follicular lymphoma, immunoblastic lymphoma, mucosa-associated lymphatic tissue lymphoma, B-cell chronic lymphocytic leukemia, mantle cell lymphoma, mediastinal large B cell lymphoma, lymphoplasmactic lymphoma, nodal marginal zone B cell lymphoma, splenic marginal zone lymphoma, intravascular large B-cell lymphoma, primary effusion lymphoma, lyphomatoid granulomatosis, angioimmunoblastic lymphadenopathy, leiomyosarcomas, X-linked lymphoproliferative disease, post-transplant lymphoproliferative disorders, Hodgkin's lymphoma, or breast cancer.

16. A method for treating or ameliorating Epstein-Barr Virus infection, the method comprising administering to a subject a therapeutically effective amount of at least one compound of claim 10 .

17. The method of claim 16 , wherein the Epstein-Barr Virus infection is lytic or latent.

Continuity (4)
Continuation 15814600 · Nov 16, 2017
Continuation 15036211
Provisional Application 61904555 · Nov 15, 2013
Related Publication 20200181078A1 · Jun 11, 2020
Cited By (1)
US 12,258,314