IP Library Granted Patent US 12,203,118
Granted Patent B2
US 12,203,118 · App. 16/623,053 · Granted Jan 21, 2025

Norcoclaurine synthases with increased activity

Inventors: Markus Schwab (Reinach, CH); Franziska Grassinger (Reinach, CH); Laura Occhipinti (Reinach, CH); Philipp Friedrich Berninger (Reinach, CH); Jon Richard Heal (Reinach, CH); Joseph Michael Sheridan (Reinach, CH); Anaelle Hatsch (Reinach, CH); Jens Houghton-Larsen (Copenhagen, DK)
Assignee: RIVER STONE BIOTECH, INC.
C12P17/165C12N9/88C12Y402/01078
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Quick Facts
Patent No.
US 12,203,118
App. No.
16/623,053
Granted
Jan 21, 2025
Kind
B2
Abstract

The invention relates to norcoclaurine synthases and substrate binding sites having one or more site-specific mutation which increase the activity, when compared to the wild type synthase, of the condensation of 4-HPAA and dopamine to (S)-norcoclaurine and/or 3,4-DhPAA and dopamine to (S)-norlaudanosoline. The inventors both identified specific mutations corresponding to at position 73, 75, 77, 82, 99, 114, 141, 142, 147, 152, 174 and/or 178 in the count according to SEQ ID No: 1, and sites corresponding to the binding domains defined in SEQ ID NO: 4 and 5, where the mutated increase of the activity may be positioned within these norcoclaurine synthases. These domains are conserved regions.

Claims (20)

1. A variant norcoclaurine synthase comprising an amino acid sequence which is at least 80% identical to the amino acid sequence of SEQ ID NO: 1, and which has one or more site-specific substitution corresponding to position 73, 77, 99, 114, 142, 152, 174 and/or 178 of SEQ ID NO: 1.

2. The variant norcoclaurine synthase according to claim 1 , wherein the one or more site-specific substitution is one or more of A73P, A77S, A77E, A77T, Q99K, Q99R, K114E, V142I, K152R, V174E, V174G, V174Q, V174E, I178A, I178S, I178D, I178N, 1178Q, and I178T of SEQ ID NO: 1.

3. The variant norcoclaurine synthase according to claim 1 , wherein the variant norcoclaurine synthase comprises the amino acid sequence HDEL (SEQ ID NO: 22)at the C-terminus of the variant norcoclaurine synthase.

4. The variant norcoclaurine synthase according to claim 1 further comprising a non-functional signal peptide.

5. The variant norcoclaurine synthase according to claim 1 , having an increased catalysation of the condensation of 4-hydroxy-phenylacetaldehyde (4-HPAA) and dopamine to(S)-norcoclaurine and/or 3,4-dihydroxy-acetaldehyde (3,4-DhPAA) and dopamine to(S)-norlaudanosoline when compared to a wild-type synthase of SEQ ID NO: 1.

6. The variant norcoclaurine synthase according to claim 1 , comprising site-specific substitutions at positions 141/142/152, 75/178, or 75/152/178 of SEQ ID NO: 1.

7. The variant norcoclaurine synthase according to claim 6 , wherein the site-specific substitutions are V141I/V142I/K152R, I75L/1178D, 175K/1178D, or I75K/K152R/1178D, of SEQ ID NO: 1.

8. A nucleic acid encoding a norcoclaurine synthase according to claim 1 .

9. The nucleic acid according to claim 8 , wherein the nucleic acid sequence is at least 70% identical to the nucleic acid sequence of SEQ ID NO: 2.

10. The nucleic acid according to claim 8 , wherein the nucleic acid is codon optimized for S. cerevisiae.

11. The nucleic acid according to claim 8 , wherein the nucleic acid sequence is at least 60% identical to the nucleic acid sequence of SEQ ID NO: 3.

12. The nucleic acid according to claim 8 , wherein the nucleic acid sequence is at least 80% identical to the nucleic acid sequence of SEQ ID NO: 3.

13. A heterologous host cell comprising the variant norcoclaurine synthase according to claim 1 , wherein the norcoclaurine synthase is heterologous to the host cell.

14. The heterologous host cell according to claim 13 , wherein the cell is a yeast cell, a plant cell, a mammalian cell, an insect cell, a fungal cell, a bacterial cell, an algal cell, or a cyanobacterial cell.

15. The heterologous host cell according to claim 13 , wherein the cell is a yeast cell selected from the group consisting of Saccharomyces cerevisiae, Schizosaccharomyces pombe, Yarrowia lipolytica, Candida glabrata, Ashbya gossypii, Cyberlindnera jadinii, Pichia pastoris, Kluyveromyces lactis, Hansenula polymorpha, Candida boidinii, Arxula adeninivorans, Xanthophyllomyces dendrorhous, Candida albicans, Rhodotorula sp., or Rhodospiridium sp.

16. The heterologous host cell according to claim 13 , wherein the host cell is a Saccharomyces.

17. The heterologous host cell according to claim 13 , wherein the host cell is a yeast cell is a Saccharomyces cerevisiae cell.

18. A method for preparing a(S)-norcoclaurine and/or(S)-norlaudanosoline compound, the method comprising the steps of:

providing a recombinant host cell according to claim 13 , capable of catalysing the condensation of 4-hydroxy-phenylacetaldehyde (4-HPAA) and dopamine to(S)-norcoclaurine and/or 3,4-dihydroxy-acetaldehyde (3,4-DhPAA) and dopamine to(S)-norlaudanosoline, and

culturing the cell under conditions promoting said catalysation; and optionally isolating the(S)-norcoclaurine and/or(S)-norlaudanosoline.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 7, 2024
From: SCHWAB, MARKUS; GRASSINGER, FRANZISKA; BERNINGER, PHILIPP FRIEDRICH; HEAL, JON RICHARD; SHERIDAN, JOSEPH MICHAEL; HATSCH, ANAELLE; HOUGHTON-LARSEN, JENS
To: RIVER STONE BIOTECH, LLC
Reel/Frame 066689/0716 →
CHANGE OF NAME Recorded Mar 7, 2024
From: RIVER STONE BIOTECH, LLC
To: RIVER STONE BIOTECH, INC.
Reel/Frame 066767/0509 →
Priority Claims (2)
DK PA201770474 · Jun 16, 2017 · national
DK PA201770533 · Jun 30, 2017 · national
Continuity (1)
Related Publication 20230193333A1 · Jun 22, 2023
References Cited (46)
US 10119155B2 · Facchini · 2018 [cited by examiner]
US 20060014264A1 · Sauer · 2006 [cited by applicant]
WO WO2014143744A2 · 2014 [cited by applicant]
WO WO2015066642 · 2015 [cited by applicant]
WO WO2015164960A1 · 2015 [cited by applicant]
WO WO2015192233A1 · 2015 [cited by examiner]
WO WO2016049364 · 2016 [cited by applicant]
WO WO2017122189 · 2017 [cited by applicant]
WO WO2018075670A1 · 2018 [cited by applicant]
WO WO2018229305 · 2018 [cited by applicant]
WO WO2020078837A1 · 2020 [cited by applicant]
WO WO2020144371A1 · 2020 [cited by applicant]
Uniprot, Accession No. Q67A25, 2016, www.uniprot.org. (Year: 2016). [cited by examiner]
Lichman, Enzyme catalysed Pictet-Spengler formation of chiral 1,1′-disubstituted- and spiro-tetrahydroisoquinolines, Nature Comm. 8, 2017, 14883. (Year: 2017). [cited by examiner]
Pesnot et al., The Catalytic Potential of Coptis japonica NCS2 Revealed, Adv. Synth Catal. 354, 2012, 2997-3008. (Year: 2012). [cited by examiner]
GenBank, Accession No. A2A1A1.2, 2016, www.ncbi.nlm.nih.gov (Year: 2016). [cited by examiner]
GenBank, Accession No. EU883006.1, 2009, ncbi.nlm.nih.gov (Year: 2009). [cited by examiner]
Genbank, Accession No. AB267399, 2010, www.ncbi.nlm.gov. (Year: 2010). [cited by examiner]
Grewal et al., Peroxisome compartmentalization of a toxic enzyme improves alkaloid production, Nature Chem. Biol. 17, 2021, 96-103. (Year: 2021). [cited by examiner]
Trenchard et al., De novo production of the key branch point benzylisoquinoline alkaloid reticuline in yeast, Metabolic Eng. 31, 2015 , 74-83. (Year: 2015). [cited by examiner]
GenBank, Accession No. AAR22502, 2004, www.ncbi.nlm.nih.gov. (Year: 2004). [cited by examiner]
Pesnot et al., The Catalytic Potential of Coptis japonica NCS2 Revealed—Development and Utilisation of a Fluorescamine-Based Assay, Adv. Synth. Catal. 354, 2012, 2997-300. (Year: 2012). [cited by examiner]
Bateman A, et al. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucl. Acids Res., 27(1): 260-62 (1999). [cited by applicant]
Bonamore A., et al. Norcoclaurine Synthase: Mechanism of an Enantioselective Pictet-Spenger Catalyzing Enzyme. Molecules 15, 2070-78 (2010). [cited by applicant]
Deloache W.C., et al. An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose. Nat. Chem. Biol. 11, 465-71 (2015). [cited by applicant]
Galanie S, et al. Complete biosynthesis of opioids in yeast. Science, 349(6252): 1095-1100 (2015). [cited by applicant]
Geitz R.D. and R.H. Schiestl. High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat. Protoc. 2, 31-34 (2007). [cited by applicant]
Giaever G and C Nislow The Yeast Deletion Collection: A Decade of Functional Genomics. Genetics, vol. 197, 451-65 (2014). [cited by applicant]
Ilari A, et al. Structural Basis of Enzymatic (S)-Norcoclaurine Biosynthesis. J Biol. Chem. vol. 284, No. 2, pp. 897-904 (2009). [cited by applicant]
Lichman B.R., et al. ‘Dopamine-first’ mechanism enables the rational engineering of the norcoclaurine synthase aldehyde activity profile. FEBS Journal, 282, 1137-51 (2015). [cited by applicant]
Luttik, M.A.H., et al. Alleviation of feedback inhibition in [cited by applicant]
Mumberg D, et al. Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene, 156: 119-22 (1995). [cited by applicant]
Narcross L, et al. Microbial Factories for the Production of Benzylisoquinoline Alkaloids. Trends in Biotechnol. 34(3): 228-41 (2016). [cited by applicant]
Needleman, S.B. and C.D. Wunsch. A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins. J. Mol. Biol. 48, 443-53 (1970). [cited by applicant]
Nicaud J-M. Yarowia lipolytica. Yeast 29: 409-18 (2012). [cited by applicant]
Prelich G. Gene Overexpression: Uses, Mechanisms and Interpretation. Genetics, vol. 190, 841-54 (2012). [cited by applicant]
Rice P., et al. EMBOSS: The European Molecular Biology Open Software Suite. TIG, vol. 16, No. 6 (2000). [cited by applicant]
Sonnhammer E.L.L., et al. Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments. Proteins: Structure, Function, and Genetics, 28:405-20 (1997). [cited by applicant]
Sonnhammer E.L.L., et al. Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucl. Acids Res. vol. 26, No. 1, 320-22 (1998). [cited by applicant]
Diamond et al., “Metabolic engineering for the production of plant isoquinoline alkaloids”, Plant Biotechnology Journal, vol. 14(6):1319-1328 (Oct. 2015). [cited by applicant]
Polturak et al., “Elucidation of the first committed step in betalain biosynthesis enables the heterologous engineering of betalain pigments in plants”, New Phytologist, vol. 210(1):269-283 (Dec. 2015). [cited by applicant]
Brohée, et al. (2010). “YTPdb: A wiki database of yeast membrane transporters.” Biochim. Biophys. Acta Biomembr. 1798, 1908-1912. [cited by applicant]
Hawkins and Smolke (2008). “Production of benzylisoquinoline alkaloids in [cited by applicant]
Murphy and Lin (2001). “Vertebroplasty: a simple solution to a difficult problem.” J. Clin. Densitom. 4, 189-197. [cited by applicant]
Schläger and Dräger (2016). “Exploiting plant alkaloids.” Curr. Opin. Biotechnol. 37, 155-164. [cited by applicant]
Shitan, et al. (2014). “Alkaloid transporters in plants.” Plant Biotechnol. (Tokyo) 31, 453-463. [cited by applicant]