IP Library Granted Patent US 11,352,389
Granted Patent B2
US 11,352,389 · App. 16/627,230 · Granted Jun 7, 2022

Treatment of haematological malignancies

Inventors: Marieke Griffioen (Leiden, NL); J. H. Frederik Falkenburg (Leiden, NL)
Assignee: Academisch Ziekenhuis Leiden (h.o.d.n. Leids Universitair Medisch Centrum)
C07K7/06A61K35/17A61K35/761A61P35/02C07K14/4748C07K14/7051C12N15/86A61K2039/5154A61K2039/525A61K2039/53A61K2039/572A61K2039/585A61K2039/6006
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Quick Facts
Patent No.
US 11,352,389
App. No.
16/627,230
Granted
Jun 7, 2022
Kind
B2
Abstract

Novel nucleic acid sequences, vectors, modified cells, peptides and pharmaceutical compositions are provided that are useful in the treatment of human subjects having a ΔNPM1 positive haematological malignancy. Corresponding methods and uses are also provided.

Claims (28)

1. An isolated nucleic acid sequence comprising a promoter operably linked to a nucleic acid sequence encoding:

(a) a polypeptide comprising a CDR3 of a TCR α chain polypeptide that specifically binds to the peptide CLAVEEVSL (SEQ ID NO:1) and/or

(b) a polypeptide comprising a CDR3 of a TCR β chain polypeptide that specifically binds to the peptide CLAVEEVSL (SEQ ID NO:1),

wherein the isolated nucleic acid sequence is cDNA.

2. The isolated nucleic acid sequence of claim 1 , wherein the nucleic acid sequence encodes both (a) and (b), and wherein (a) and (b) together specifically bind to the peptide CLAVEEVSL (SEQ ID NO:1).

3. The isolated nucleic acid sequence of claim 1 , wherein:

(i) the CDR3 of (a) has an amino acid sequence having at least 90% sequence identity to CAVTGARLMF (SEQ ID NO:2);

(ii) the CDR3 of (a) is encoded by the nucleic acid sequence of SEQ ID NO: 3 or SEQ ID NO:4;

(iii) the CDR3 of (b) has an amino acid sequence having at least 90% sequence identity to CASSPGGLSNEQF (SEQ ID NO:5);

(iv) the CDR3 of (b) is encoded by the nucleic acid sequence of SEQ ID NO: 6 or SEQ ID NO:7;

(v) the CDR3 of (a) is within a TCR α chain variable region that specifically binds to SEQ ID NO:1, optionally wherein (a) further comprises a TCR α chain constant region; optionally wherein the TCR α chain variable region has an amino acid sequence having at least 90% sequence identity to SEQ ID NO:8, and optionally wherein the TCR α chain variable region of (a) is encoded by the nucleic acid sequence of SEQ ID NO: 9 or SEQ ID NO:10;

(vi) the CDR3 of (b) is within a TCR β chain variable region that specifically binds to SEQ ID NO:1, optionally wherein (b) further comprises a TCR β chain constant region, optionally wherein the TCR β chain variable region has an amino acid sequence having at least 90% sequence identity to SEQ ID NO:11, and optionally wherein the TCR β chain variable region of (b) is encoded by the nucleic acid sequence of SEQ ID NO: 12 or SEQ ID NO:13;

(vii) the CDR3 of (a) is within a TCR α chain variable region having at least 90% sequence identity to SEQ ID NO:8, wherein the CDR3 has an amino acid sequence of SEQ ID NO: 2; and optionally wherein (a) comprises a TCR α chain constant region, and optionally wherein the TCR α chain variable region CDR1 has an amino acid sequence of SEQ ID NO:14 and the TCR α chain variable region CDR2 has an amino acid sequence of SEQ ID NO:15; and/or

(viii) the CDR3 of (b) is within a TCR β chain variable region having at least 90% sequence identity to SEQ ID NO:11, wherein the CDR3 has an amino acid sequence of SEQ ID NO: 5; and optionally wherein (b) comprises a TCR β chain constant region, and optionally wherein the TCR β chain variable region CDR1 has an amino acid sequence of SEQ ID NO:16 and the TCR β chain variable region CDR2 has an amino acid sequence of SEQ ID NO:17.

4. The isolated nucleic acid sequence of claim 1 , wherein the peptide CLAVEEVSL (SEQ ID NO:1) is cysteinylated.

5. The isolated nucleic acid sequence of claim 1 , wherein the nucleic acid sequence encodes a T cell receptor.

6. A vector comprising the nucleic acid sequence of claim 1 .

7. The vector of claim 6 , wherein the vector is a plasmid or a viral vector, optionally wherein the vector is selected from the group consisting of a retrovirus, lentivirus, adeno-associated virus, adenovirus, vaccinia virus, canary poxvirus, herpes virus, minicircle vector, synthetic DNA, and synthetic RNA.

8. A modified cell transfected or transduced with the nucleic acid sequence of claim 1 or a vector comprising the nucleic acid sequence of claim 1 .

9. The modified cell of claim 8 , wherein the modified cell is selected from the group consisting of a CD8 T cell, a CD4 T cell, a NK cell, a NKT cell, a gamma-delta T cell, a hematopoietic stem cell, a progenitor cell, a T cell line and a NK-92 cell line, and optionally wherein the modified cell is a human cell.

10. A pharmaceutical composition for treating or preventing a ΔNPM1 positive haematological malignancy, comprising

(a) the nucleic acid sequence of claim 1 , a vector comprising the nucleic acid sequence of claim 1 , or a modified cell comprising the nucleic acid sequence of claim 1 , and

(b) a pharmaceutically acceptable excipient, adjuvant, diluent and/or carrier.

11. A method of treating or preventing a ΔNPM1 positive haematological malignancy in a human subject, the method comprising administering to the subject a therapeutically effective amount of the pharmaceutical composition of claim 10 .

12. The method of claim 11 , wherein the haematological malignancy is a myeloid malignancy, and optionally wherein the myeloid malignancy is acute myeloid leukemia.

13. The method of claim 11 , wherein the method induces or enhances a cell mediated immune response in the subject.

14. A method of generating a T cell receptor, comprising contacting a nucleic acid sequence of claim 1 with a cell under conditions in which the nucleic acid sequence is incorporated and expressed by the cell to generate the T cell receptor that specifically binds to the peptide of SEQ ID NO:1.

15. The method of claim 14 , wherein the method is ex vivo.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 27, 2019
From: GRIFFIOEN, MARIEKE; FALKENBURG, J. H. FREDERIK
To: ACADEMISCH ZIEKENHUIS LEIDEN (H.O.D.N. LEIDS UNIVERSITAIR MEDISCH CENTRUM)
Reel/Frame 051380/0207 →
Priority Claims (2)
NL 2019156 · Jun 30, 2017 · national
NL 2020602 · Mar 16, 2018 · national
Continuity (1)
Related Publication 20200123200A1 · Apr 23, 2020