IP Library Granted Patent US 11,427,553
Granted Patent B2
US 11,427,553 · App. 16/635,504 · Granted Aug 30, 2022

Dihydrooxadiazinones

Inventors: Manuel Ellermann (Berlin, DE); Stefan Nikolaus Gradl (Berlin, DE); Charlotte Christine Kopitz (Falkensee, DE); Martin Lange (Berlin, DE); Adrian Tersteegen (Wuppertal, DE); Philip Lienau (Berlin, DE); Christa Hegele-Hartung (Mülheim an der Ruhr, DE); Detlev Sülzle (Berlin, DE); Timothy A. Lewis (Cambridge, MA); Heidi Greulich (Cambridge, MA); Xiaoyun Wu (Cambridge, MA); Matthew Meyerson (Boston, MA); Alex Burgin (Cambridge, MA)
Assignees: Bayer Aktiengesellschaft; Bayer Pharma Aktiengesellschaft; The Broad Institute, Inc.; Dana-Farber Cancer Institute, Inc.
C07D273/04C07D413/10C07D413/12C07D417/10C07D471/04C07D491/107C07D495/10
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Quick Facts
Patent No.
US 11,427,553
App. No.
16/635,504
Granted
Aug 30, 2022
Kind
B2
Abstract

The present invention provides dihydrooxydiazinone compounds of general formula (I): in which R 1 , R 2 , R 3 , and R 4 , are as defined herein, methods of preparing said compounds, intermediate compounds useful for preparing said compounds, pharmaceutical compositions and combinations comprising said compounds and the use of said compounds for manufacturing pharmaceutical compositions for the treatment or prophylaxis of diseases, in particular of hyperproliferative diseases, as a sole agent or in combination with other active ingredients.

Claims (130)

1. A compound having the structure of general formula (II):

in which

R 1 is selected from CF 3 and a fluorine atom;

R 2 is a hydrogen atom;

R 4 is selected from a hydrogen atom, and a C 1 -C 3 -alkyl group;

and X is a fluorine atom, a chlorine atom, a bromine atom or an iodine atom, or a group selected from (C 1 -C 4 -alkylsulfonyl)oxy, (C 1 -C 4 -fluoroalkylsulfonyl)oxy and (phenylsulfonyl)oxy being optionally substituted with one, two, three, four or five substituents, each of them independently selected from halogen, nitro, cyano, C1-C4-alkyl and C1-C4-alkoxy.

2. A method comprising:

the step A of allowing the compound of general formula (II)

to react under transition metal catalysed coupling conditions with an organoboron compound in the presence of a base and a palladium catalyst and, optionally, an additional ligand;

wherein the compound of formula (II) has the structure:

where

R 1 is selected from a hydrogen atom, a halogen atom, a cyano group, a C 1 -C 3 -alkyl group, a C 1 -C 3 -haloalkyl group, and a C 1 -C 3 -haloalkoxy group;

R 2 is selected from a hydrogen atom and a halogen atom;

R 4 is selected from a hydrogen atom, and a C 1 -C 3 -alkyl group;

X is a fluorine atom, a chlorine atom, a bromine atom or an iodine atom, or a group selected from (C 1 -C 4 -alkylsulfonyl)oxy, (C 1 -C 4 -fluoroalkylsulfonyl)oxy and (phenylsulfonyl)oxy being optionally substituted with one, two, three, four or five substituents, each of them independently selected from halogen, nitro, cyano, C 1 -C 4 -alkyl and C 1 -C 4 -alkoxy;

with the prerequisite that and if X is a chlorine atom, a bromine atom or an iodine atom then R 1 and R 2 is not chlorine, bromine or iodine; and

the organoboron compound is selected from

a boronic acid of formula (Ma)

(R x )B(OH) 2   (IIIa),

a boronic ester of formula

(R x )B(OR Y ) 2   (IIIb),

and a tetrafluoroborate salt of formula

(R x )BF 4   (IIIc),

whereby

R x is a C 1 -C 6 -alkyl group which is optionally substituted with one or two substituents and each substituent is independently selected from a hydroxy group, a C 1 -C 4 -alkoxy group, and a 3- to 7-membered heterocycloalkyl group,

a C 2 -C 6 -alkenyl group which is optionally substituted with an C 1 -C 4 -alkoxy group,

a C 5 -C 9 -cycloalkenyl group, which is optionally substituted with a hydroxy group,

a 3- to 9-membered heterocycloalkyl group, comprising one, two or three heteroatoms which are independently selected from —O—, —S—, —S(O)—, S(O) 2 , and —NR 9 —,

and said heterocycloalkyl group optionally further comprising a bridging group selected from —O—, —NR 9 —, —CH 2 —, —CH 2 —CH 2 —, —O—CH 2 —, —CH 2 —O—, —NR 9 —CH 2 —, and —CH 2 —NR 9 —;

and said heterocycloalkyl group is optionally substituted with one, two or three substituents and each substituent is independently selected from a halogen atom;

a oxo(═O) group;

a cyano group;

a hydroxy group;

a C 1 -C 3 -alkyl group which is optionally further substituted with a hydroxy group;

a C 1 -C 3 -haloalkyl group;

a C 1 -C 3 -alkoxy group;

a C 1 -C 3 -haloalkoxy group;

a C(O)NR 5 R 6 group and

a NR 5 R 6 group,

a 5- to 9-membered heterocycloalkyl group which is partially unsaturated and optionally substituted with one, two or three substituents and each substituent is independently selected from an oxo group (═O), a C 1 -C 3 -alkyl group a —C(O)R 5 R 6 group and a halogen atom,

an aryl group which is optionally substituted with one, two, three or four substituents and each substituent is independently selected from a halogen atom, a hydroxy group, a cyano group, a C 1 -C 3 -alkyl group, a C 1 -C 3 -haloalkyl group, a C 1 -C 3 -alkoxy group, a C 1 -C 3 -haloalkoxy group, and a NR 5 R 6 group,

a mono- or bicyclic heteroaryl group which is optionally substituted with one, two or three substituents and each substituent is independently selected from a halogen atom, a C 1 -C 3 -alkyl group, a cyano group, a C 1 -C 3 -haloalkyl group, a C 1 -C 3 -alkoxy group, a hydroxy group, and a NR 5 R 6 group, with the proviso that said monocyclic heteroaryl group is not a pyridin-4-yl group; and

R y is C 1 -C 6 -alkyl, or the two residues R y together are a C 2 -C 6 -alkylene group; and

the palladium catalyst is selected from: dichlorobis(triphenylphosphine)palladium, tetrakistriphenylphosphinepalladium(0), palladium(II) acetate/triscyclohexylphosphine, tris(dibenzylideneacetone)dipalladium, bis(diphenylphosphineferrocenyl)palladium(II) chloride, 1,3-bi s(2,6-diisopropylphenyl)imidazol-2-ylidene(1,4-naphthoquinone)palladium dimer, allyl(chloro)(1,3-dimesityl-1,3-dihydro-2H-imidazol-2-ylidene)palladium, palladium(II) acetate/dicyclohexyl(2′,4′,6′-triisopropyl-biphenyl-2-yl)phosphine, [1,1-bis(diphenylphosphino)ferrocene]palladium(II) chloride monodichloromethane adduct, [1,1′-Bis(diphenylphosphino)ferrocene]dichloropalladium(II), chloro(2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)[2-(2′-amino-1,1′-biphenyl)]palladium(II),

palladium (II) acetate and (2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)[2-(2′-amino-1,1′-biphenyl)] palladium(II);

in order to form a compound of general formula (I):

wherein R 3 is R x .

3. The method according to claim 2 , wherein

for the compound: le is trifluoromethyl and R 2 is a hydrogen atom,

and

Suzuki coupling conditions are used and the palladium catalyst is chloro(2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)[2-(2′-amino-1,1′-biphenyl)]palladium(II), and the ligand is 2-(dicyclohexylphosphino)-2′,4′,6′-triisopropylbiphenyl.

4. A method comprising:

the step B of allowing an intermediate compound of general formula (II) to react with an amine selected from HNR 7 R 8 and a cyclic amine featuring one N—H as a ring atom,

wherein

R 7 /R 8 are independently selected from

a hydrogen atom, with the proviso that R 7 =R 8 =hydrogen is excluded,

a C 1 -C 6 -alkyl group,

which is optionally substituted with one, two, three or four substituents and said substituent is independently selected from

a halogen atom, a cyano group, a hydroxy group, a C(O)NR 5 R 6 group, a NR 5 R 6 group,

a C 1 -C 3 -alkoxy group,

a C 3 -C 7 -cycloalkyl group which is optionally substituted with one or two substituents and said substituents are independently selected from a C 1 -C 3 -alkylgroup, an oxo (═O) group, a hydroxy group, and a C 1 -C 3 -hydroxyalkyl group;

a 3- to 7-membered heterocycloalkyl group which itself is optionally substituted with a C 1 -C 3 -alkyl group or an oxo (═O) group,

a heteroaryl group, which itself is optionally substituted with a C 1 -C 3 -alkyl group;

a —C 1 -C 5 -alkylene-O—C 1 -C 5 -alkyl group,

a —C 1 -C 5 -alkylene-S—C 1 -C 5 -alkyl group,

a —C 1 -C 5 -alkylene-NR 5 —C 1 -C 5 -alkyl group,

a C 3 -C 6 -cycloalkyl group which is optionally substituted with a hydroxy group, and

a 3- to 6-membered heterocycloalkyl group which is optionally substituted with one or two substituents, said substituent independently selected from C 1 -C 3 -alkyl group and a hydroxy group,

a 3- to 9-membered heterocycloalkane containing one N—H as a ring atom is to be understood as a cyclic amine corresponding to a 3- to 9-membered heterocycloalkyl group as defined for R 3 supra, with the proviso it contains one N—H as a ring atom,

a partially unsaturated 3- to 9-membered heterocycloalkane containing one N—H as a ring atom is to be understood as a cyclic amine corresponding to a partially unsaturated 3- to 9-membered heterocycloalkyl group, as defined for R 3 supra, with the proviso it contains one N—H as a ring atom, and

a heteroarene containing one N—H as a ring atom is to be understood as a cyclic amine corresponding to a heteroaryl group as defined for R 3 supra, with the proviso it contains one N—H as a ring atom; and

said cyclic amine being selected from a 3- to 9-membered heterocycloalkane, a partially unsaturated 3- to 9-membered heterocyloalkane, and a heteroarene, containing one N—H as a ring atom, respectively, and

the compound of formula (II) has the structure:

where

R 1 is selected from a hydrogen atom, a halogen atom, a cyano group, a C 1 -C 3 -alkyl group, a C 1 -C 3 -haloalkyl group, and a C 1 -C 3 -haloalkoxy group;

R 2 is selected from a hydrogen atom and a halogen atom;

R 4 is selected from a hydrogen atom, and a C 1 -C 3 -alkyl group;

X is F or C 1 , with the proviso that if X is C 1 , R 1 or R 2 cannot be F; and at least one of R 1 and R 2 exerts an electron withdrawing effect;

or a stereoisomer, a tautomer, an N-oxide, a hydrate, a solvate, or a salt thereof, or a mixture of same; and

optionally in the presence of a base, and optionally the presence of an inert solvent, and at temperature ranging from RT to 160° C., in order to form a compound of general formula (I):

wherein R 3 is selected from —NR 7 R 8 , an N-linked 3- to 9-membered heterocycloalkyl group, an N-linked, partially unsaturated 3- to 9-membered heterocyloalkyl group, and an N-linked heteroaryl group.

5. The method according to claim 4 wherein

for the compound of formula (II): R 1 is trifluoromethyl and R 2 is a hydrogen atom, and

two residues R y together are —C(CH 3 ) 2 —C(CH 3 ) 2 — to form a pinacol ester, the base is potassium carbonate or potassium acetate.

6. A method comprising:

the step C of allowing an intermediate compound of general formula (II) to react with

an amine, optionally as a free base or as a salt, in the presence of a base, and a palladium catalyst optionally with a ligand in an inert solvent, and at a temperature ranging from 60° C. to 160° C.;

wherein the amine is selected from HNR 7 R 8 and cyclic amine featuring one N—H as a ring atom, said cyclic amine being selected from a 3- to 9-membered heterocycloalkane, a partially unsaturated 3- to 9-membered heterocyloalkane, and a heteroarene, containing one N—H as a ring atom, respectively,

in which

R 7 /R 8 are independently selected from

a hydrogen atom, with the proviso that R 7 =R g =hydrogen is excluded,

a C 1 -C 6 -alkyl group,

which is optionally substituted with one, two, three or four substituents and said substituent is independently selected from

a halogen atom, a cyano group, a hydroxy group, a C(O)NR 5 R 6 group, a NR 5 R 6 group, a C 1 -C 3 -alkoxy group,

a C 3 -C 7 -cycloalkyl group which is optionally substituted with one or two substituents and said substituents are independently selected from a C 1 -C 3 -alkylgroup, a oxo (═O) group, a hydroxy group, and a C 1 -C 3 -hydroxyalkyl group;

a 3- to 7-membered heterocycloalkyl group which itself is optionally substituted with a C 1 -C 3 -alkyl group or an oxo (═O) group,

a heteroaryl group, which itself is optionally substituted with a C 1 -C 3 -alkyl group;

a —C 1 -C 5 -alkylene-O—C 1 -C 5 -alkyl group,

a —C 1 -C 5 -alkylene-S—C 1 -C 5 -alkyl group,

a —C 1 -C 5 -alkylene—NR 5 —C 1 -C 5 -alkyl group,

a C 3 -C 6 -cycloalkyl group which is optionally substituted with a hydroxy group, and

a 3- to 6-membered heterocycloalkyl group which is optionally substituted with one or two substituents, said substituent independently selected from C 1 -C 3 -alkyl group and a hydroxy group,

a 3- to 9-membered heterocycloalkane containing one N—H as a ring atom is to be understood as a cyclic amine corresponding to a 3- to 9-membered heterocycloalkyl group as defined for R 3 supra, with the proviso it contains one N—H as a ring atom,

a partially unsaturated 3- to 9-membered heterocycloalkane containing one N—H as a ring atom is to be understood as a cyclic amine corresponding to a partially unsaturated 3- to 9-membered heterocycloalkyl group, as defined for R 3 supra, with the proviso it contains one N—H as a ring atom, and

a heteroarene containing one N—H as a ring atom is to be understood as a cyclic amine corresponding to a heteroaryl group as defined for R 3 supra, with the proviso it contains one N—H as a ring atom; and

the compound of formula (II) has the structure:

where

R 1 is selected from a hydrogen atom, a halogen atom, a cyano group, a C 1 -C 3 -alkyl group, a C 1 -C 3 -haloalkyl group, and a C 1 -C 3 -haloalkoxy group;

R 2 is selected from a hydrogen atom and a fluorine atom;

R 4 is selected from a hydrogen atom, and a C 1 -C 3 -alkyl group;

X is a fluorine atom, a chlorine atom, a bromine atom or an iodine atom, or a group selected from (C 1 -C 4 -alkylsulfonyl)oxy, (C 1 -C 4 -fluoroalkylsulfonyl)oxy and (phenylsulfonyl)oxy being optionally substituted with one, two, three, four or five substituents, each of them independently selected from halogen, nitro, cyano, C 1 -C 4 -alkyl and C 1 -C 4 -alkoxy;

with the prerequisite that and if X is a chlorine atom, a bromine atom or an iodine atom then R 1 and R 2 is not chlorine, bromine or iodine;

in order to form a compound of general formula (I):

wherein R 3 is selected from —NR 7 R 8 , N-linked 3- to 9-membered heterocycloalkyl group, an N-linked, partially unsaturated 3- to 9-membered heterocyloalkyl group, and an N-linked heteroaryl group.

7. The method according to claim 2 , wherein

for the compound (II): le is trifluoromethyl and R 2 is a hydrogen atom, and

the palladium catalyst is tris(dibenzylideneacetone)dipalladium(0) and the ligand is 2-(dicyclohexylphosphino)-2′,4′,6′-triisopropyl-1,1′-biphenyl or 2,2′-bis(diphenylphosphino)-1,1′-binaphthalene.

8. The compound according to claim 1 , wherein

R 4 is selected from a hydrogen atom and a methyl group.

9. The compound according to claim 1 , wherein the compound is selected from:

5-(3,4-Difluorophenyl)-3,6-dihydro-2H-1,3,4-oxadiazin-2-one;

5-[4-Chloro-3-(trifluoromethyl)phenyl]hydro-2H-1,3,4-oxadiazin-2-one;

5-(4-Chloro-3-fluorophenyl)-3,6-dihydro-2H-1,3,4-oxadiazin-2-one;

5-[4-Fluoro-3-(trifluoromethyl)phenyl]-3,6-dihydro-2H-1,3,4-oxadiazin-2-one;

(rac)-5-[4-Chloro-3 4trifluoromethyl)phenyl]ethyl-3,6-dihydro-2H-1,3,4-oxadiazin-2-one;

(6 S)-5-[4-Chloro-3-(trifluoromethyl)phenyl]ethyl-3,6-dihydro-2H-1,3,4-oxadiazin-2-one;

(6S)-5-(-[(4-Fluoro-3-(trifluoromethyl)phenyl)-)]methyl-3,6-dihydro-2H-1,3,4-oxadiazin-2-one; and

5-[4-Bromo-3-(trifluoromethyl)phenyl]hydro-2H-1,3,4-oxadiazin-2-one.

10. The method according to claim 2 , wherein R x is a methyl group which is optionally substituted with a 3 to 7 membered heterocycloalkyl group.

11. The method according to claim 2 , wherein the two residues R y together are —C(CH 3 ) 2 —C(CH 3 ) 2 .

Assignments (3)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 14, 2020
From: MEYERSON, MATTHEW
To: DANA-FARBER CANCER INSTITUTE, INC.
Reel/Frame 054056/0251 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 14, 2020
From: ELLERMAN, MANUEL; GRADL, STEFAN NIKOLAUS; KOPTIZ, CHARLOTTE CHRISTINE; LANGE, MARTIN; TERSTEEGEN, ADRIAN; LIENAU, PHILIP; HEGELE-HARTUNG, CHRISTA; SULZE, DETLEV
To: BAYER AKTIENGESELLSCHAFT; BAYER PHARMA AKTIENGESELLSCHAFT
Reel/Frame 054056/0332 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 14, 2020
From: LEWIS, TIMOTHY A.; GREULICH, HEIDI; WU, XIAOYUN; BURGIN, ALEX
To: THE BROAD INSTITUTE, INC.
Reel/Frame 054056/0373 →
Continuity (2)
Provisional Application 62541627 · Aug 4, 2017
Related Publication 20200369633A1 · Nov 26, 2020
Cited By (2)
US 12,258,323 US 12,427,153