IP Library › Granted Patent US 11,008,334
Granted Patent B2
US 11,008,334 · App. 16/720,526 · Granted May 18, 2021

Compositions and methods for treating cancer

Inventors: Jonathan Ostrem (San Francisco, CA); Ulf Peters (San Francisco, CA); Kevan M. Shokat (San Francisco, CA)
Assignee: The Regents of the University of California
C07D495/04A61K38/1709C07C235/20C07C317/08C07D207/14C07D211/58C07D211/62C07D231/40C07D295/185C07D295/26C07D401/04C07D401/06C07D401/12C07D405/12C07D409/04C07D413/12C07D417/12C07D471/10C07D487/04C07D487/10C12N9/14C12Q1/6886C12Q2600/156C12Q2600/158C12Y306/05002G01N2500/04
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Quick Facts
Patent No.
US 11,008,334
App. No.
16/720,526
Granted
May 18, 2021
Kind
B2
Abstract

K-Ras is the most frequently mutated oncogene in human cancer. Disclosed herein are compositions and methods for modulating K-Ras and treating cancer.

Claims (30)

1. A K-Ras protein covalently bonded to a compound, wherein the compound is covalently bonded to cysteine residue 12 of the K-Ras protein and is in contact with one or more amino acid residues of a K-Ras protein Switch 2 binding pocket.

2. The K-Ras protein of claim 1 , wherein the one or more amino acid residues of the K-Ras protein Switch 2 binding pocket are selected from the group consisting of V7, V9, G10, K16, P34, T58, G60, Q61, E62, E63, R68, Y71, M72, Y96, Q99, and I100.

3. The K-Ras protein of claim 1 , wherein the one or more amino acid residues of the K-Ras protein Switch 2 binding pocket comprise at least three amino acid residues selected from the group consisting of V7, V9, G10, K16, P34, T58, G60, Q61, E62, E63, R68, Y71, M72, Y96, Q99, and I100.

4. The K-Ras protein of claim 1 , wherein the one or more amino acid residues of the K-Ras protein Switch 2 binding pocket are selected from the group consisting of K16, R68, M72, Y96, and Q99.

5. The K-Ras protein of claim 1 , wherein the compound has an electrophilic chemical moiety covalently bonded to cysteine residue 12 of the K-Ras protein, wherein the electrophilic chemical moiety is a substituted or unsubstituted acrylamide.

6. The K-Ras protein of claim 1 , wherein the compound has an electrophilic chemical moiety covalently bonded to cysteine residue 12 of the K-Ras protein, wherein electrophilic chemical moiety is:

wherein R 13 is hydrogen, halogen, —CX b 3 , or —CN; and X b is Cl, Br, I or F.

7. The K-Ras protein of claim 1 , wherein the compound has the formula:

R 1 -L 1 -L 2 -L 3 -E,

wherein:

R 1 is a Switch 2 Binding Pocket binding moiety;

L 1 is a bond or a divalent radical chemical linker;

L 2 is a bond;

L 3 is

f8 is an integer from 0 to 8;

R 2C is independently hydrogen or substituted or unsubstituted alkyl; and

E is an electrophilic chemical moiety covalently bonded with cysteine residue 12 of the K-Ras protein.

8. The K-Ras protein of claim 7 , wherein E is:

wherein R 13 is hydrogen, halogen, —CX b 3 , or —CN; and X b is Cl, Br, I or F.

9. The K-Ras protein of claim 7 , wherein:

R 1 is R 3 — substituted or unsubstituted aryl or R 3 -substituted or unsubstituted heteroaryl;

R 3 is independently hydrogen, oxo, halogen, —CX 3 , —CN, —SO 2 Cl, —SO n R 10 , —SO v NR 7 R 8 , —NHNH 2 , —ONR 7 R 8 , —NHC═(O)NHNH 2 , —NHC═(O)NR 7 R 8 , —N(O) m , —NR 7 R 8 , —C(O)R 9 , —C(O)—OR 9 , —C(O)NR 7 R 8 , —NR 7 SO 2 R 10 , —NR 7 C═(O)R 9 , —NR 7 C(O)—OR 9 , —NR 7 OR 9 , —OCX 3 , —OCHX 2 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 7 , R 8 , R 9 , and R 10 are independently hydrogen, halogen, —CF 3 , —CN, —OH, —NH 2 , —COOH, —CONH 2 , —NO 2 , —SH, —SO 2 Cl, —SO 3 H, —SO 4 H, —SO 2 NH 2 , —NHNH 2 , —ONH 2 , —NHC═(O)NHNH 2 , —NHC═(O)NH 2 , —NHSO 2 H, —NHC═(O)H, —NHC(O)—OH, —NHOH, —OCF 3 , —OCHF 2 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

m and v are independently 1 or 2;

n is independently an integer from 0 to 4; and

each X is independently —Cl, —Br, —I, or —F.

10. The K-Ras protein of claim 9 , wherein

R 1 is R 3 -substituted or unsubstituted aryl;

R 3 is independently oxo, halogen, —OR 10 , substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; and

R 10 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, or substituted or unsubstituted alkyl.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 2, 2020
From: SHOKAT, KEVAN M.; OSTREM, JONATHAN; PETERS, ULF
To: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
Reel/Frame 052812/0061 →
Continuity (7)
Continuation 16013271 · Jun 20, 2018
Continuation 14934184 · Nov 6, 2015
Continuation 14391369
Provisional Application 61794956 · Mar 15, 2013
Provisional Application 61728145 · Nov 19, 2012
Provisional Application 61622507 · Apr 10, 2012
Related Publication 20200255446A1 · Aug 13, 2020
Cited By (8)
US 50,527 US 12,234,244 US 12,365,693 US 12,384,750 US 12,403,196 US 12,409,225 US 12,465,643 US 12,528,818