IP Library Granted Patent US 11,134,681
Granted Patent B2
US 11,134,681 · App. 16/785,870 · Granted Oct 5, 2021

Fusion proteins and methods for stimulating plant growth, protecting plants from pathogens, and immobilizing

Inventors: Brian Thompson (Creve Coeur, MO); Katie Thompson (Creve Coeur, MO)
Assignee: Spogen Biotech Inc.
A01N37/46A01N37/48A01N63/00A01N63/10A01N63/22A01N63/50C07K14/32C12N9/0095C12N9/16C12N9/20C12N9/2402C12N9/2437C12N9/48C12Y118/06001C12Y301/01003C12Y302/01004C12Y304/00C07K2319/035C12Y301/03008
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Quick Facts
Patent No.
US 11,134,681
App. No.
16/785,870
Granted
Oct 5, 2021
Kind
B2
Abstract

The present invention is generally directed to fusion proteins containing a targeting sequence that targets the fusion protein to the exosporium of a Bacillus cereus family member. The invention also relates to recombinant Bacillus cereus family members expressing such fusion proteins, formulations containing the recombinant Bacillus cereus family members expressing the fusion proteins. Methods for stimulating plant growth and for protecting plants from pathogens by applying the recombinant Bacillus cereus family members or the formulations to plants or a plant growth medium are also described. The invention also relates to methods for immobilizing spores of a recombinant Bacillus cereus family member expressing a fusion protein on plant roots.

Claims (100)

1. A recombinant Bacillus cereus family member that expresses a fusion protein, wherein the fusion protein comprises:

a targeting sequence or exosporium protein that is capable of targeting the fusion protein to the exosporium of the recombinant Bacillus cereus family member; and

at least one protein or peptide that protects a plant from a pathogen.

2. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 43% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 54%.

3. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 50% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 63%.

4. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 62% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 72%.

5. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 81% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 90%.

6. The recombinant Bacillus cereus family member of claim 1 , wherein the targeting sequence consists of:

(a) a 16 amino acid sequence having at least 43% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 54%;

(b) amino acids 1-35 of SEQ ID NO: 1;

(c) amino acids 20-35 of SEQ ID NO: 1; or

(d) SEQ ID NO: 1.

7. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises:

(a) a targeting sequence comprising amino acids 1-35 of SEQ ID NO: 1;

(b) a targeting sequence comprising amino acids 20-35 of SEQ ID NO: 1;

(c) a targeting sequence comprising SEQ ID NO: 1;

(d) an exosporium protein comprising SEQ ID NO: 2;

(e) a targeting sequence comprising amino acids 1-27 of SEQ ID NO: 3;

(f) a targeting sequence comprising amino acids 12-27 of SEQ ID NO: 3;

(g) a targeting sequence comprising SEQ ID NO: 3;

(h) an exosporium protein comprising SEQ ID NO: 4;

(i) a targeting sequence comprising amino acids 1-38 of SEQ ID NO: 5;

(j) a targeting sequence comprising amino acids 23-38 of SEQ ID NO: 5;

(k) a targeting sequence comprising SEQ ID NO: 5;

(l) an exosporium protein comprising SEQ ID NO: 6;

(m) a targeting sequence comprising amino acids 1-28 of SEQ ID NO: 7;

(n) a targeting sequence comprising amino acids 13-28 of SEQ ID NO: 7;

(o) a targeting sequence comprising SEQ ID NO: 7;

(p) an exosporium protein comprising SEQ ID NO: 8;

(q) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 9;

(r) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 9;

(s) a targeting sequence comprising SEQ ID NO: 9;

(t) an exosporium protein comprising SEQ ID NO: 10;

(u) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 11;

(v) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 11;

(w) a targeting sequence comprising SEQ ID NO: 11;

(x) an exosporium protein comprising SEQ ID NO: 12;

(y) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 13;

(z) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 13;

(aa) a targeting sequence comprising amino SEQ ID NO: 13;

(ab) an exosporium protein comprising SEQ ID NO: 14;

(ac) a targeting sequence comprising amino acids 1-43 of SEQ ID NO: 15;

(ad) a targeting sequence comprising amino acids 28-43 of SEQ ID NO: 15;

(ae) a targeting sequence comprising amino SEQ ID NO: 15;

(af) an exosporium protein comprising SEQ ID NO: 16;

(ag) a targeting sequence comprising amino acids 1-27 of SEQ ID NO: 17;

(ah) a targeting sequence comprising amino acids 12-27 of SEQ ID NO: 17;

(ai) a targeting sequence comprising amino SEQ ID NO: 17;

(aj) an exosporium protein comprising SEQ ID NO: 18;

(ak) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 19;

(al) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 19;

(am) a targeting sequence comprising amino SEQ ID NO: 19;

(an) an exosporium protein comprising SEQ ID NO: 20;

(ao) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 21;

(ap) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 21;

(aq) a targeting sequence comprising amino SEQ ID NO: 21;

(ar) an exosporium protein comprising SEQ ID NO: 22;

(as) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 23;

(at) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 23;

(au) a targeting sequence comprising amino SEQ ID NO: 23;

(av) an exosporium protein comprising SEQ ID NO: 24;

(aw) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 25;

(ax) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 25;

(ay) a targeting sequence comprising amino SEQ ID NO: 25;

(az) an exosporium protein comprising SEQ ID NO: 26;

(ba) a targeting sequence comprising amino acids 1-30 of SEQ ID NO: 27;

(bb) a targeting sequence comprising amino acids 15-30 of SEQ ID NO: 27;

(bc) a targeting sequence comprising amino SEQ ID NO: 27;

(bd) an exosporium protein comprising SEQ ID NO: 28;

(be) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 29;

(bf) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 29;

(bg) a targeting sequence comprising amino SEQ ID NO: 29;

(bh) an exosporium protein comprising SEQ ID NO: 30;

(bi) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 31;

(bj) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 31;

(bk) a targeting sequence comprising amino SEQ ID NO: 31;

(bl) an exosporium protein comprising SEQ ID NO: 32;

(bm) a targeting sequence comprising amino acids 1-15 of SEQ ID NO: 33;

(bn) a targeting sequence comprising amino SEQ ID NO: 33;

(bo) an exosporium protein comprising SEQ ID NO: 34;

(bp) a targeting sequence comprising amino acids 1-16 of SEQ ID NO: 35;

(bq) a targeting sequence comprising amino SEQ ID NO: 35; or

(br) an exosporium protein comprising SEQ ID NO: 36.

8. The recombinant Bacillus cereus family member of claim 1 , wherein the targeting sequence comprises the amino acid sequence GXT at its carboxy terminus, wherein X is any amino acid.

9. The recombinant Bacillus cereus family member of claim 1 , wherein the protein or peptide that protects a plant from a pathogen comprises a plant immune system enhancer protein or peptide.

10. The recombinant Bacillus cereus family member of claim 9 , wherein the plant immune system enhancer protein or peptide comprises a harpin, an α-elastin, a β-elastin, a cryptogein, a flagellin protein, or a flagellin peptide.

11. The recombinant Bacillus cereus family member of claim 1 , wherein the protein or peptide that protects a plant from a pathogen has antibacterial activity, antifungal activity, or both antibacterial and antifungal activity.

12. The recombinant Bacillus cereus family member of claim 11 , wherein the protein or peptide comprises a bacteriocin, a lysozyme, a conalbumin, an albumin, or a lactoferrin.

13. The recombinant Bacillus cereus family member of claim 1 , wherein the protein that protects a plant from a pathogen comprises an enzyme.

14. The recombinant Bacillus cereus family member of claim 13 , wherein the enzyme comprises a protease or a lactonase.

15. The recombinant Bacillus cereus family member of claim 14 , wherein the protease or lactonase is specific for a bacterial signaling molecule.

16. The recombinant Bacillus cereus family member of claim 15 , wherein the bacterial signaling molecule comprises a bacterial lactone homoserine signaling molecule.

17. The recombinant Bacillus cereus family member of claim 14 , wherein the protease comprises an alkaline protease, an acid protease, or a neutral protease.

18. The recombinant Bacillus cereus family member of claim 14 , wherein the lactonase comprises 1,4-lactonase, 2-pyrone-4,6-dicarboxylate lactonase, 3-oxoadipate enol-lactonase, actinomycin lactonase, deoxylimonate A-ring-lactonase, gluconolactonase L-rhamnono-1,4-lactonase, limonin-D-ring-lactonase, steroid-lactonase, triacetate-lactonase, or xylono-1,4-lactonase.

19. The recombinant Bacillus cereus family member of claim 13 , wherein the enzyme is specific for a cellular component of a bacterium or fungus.

20. The recombinant Bacillus cereus family member of claim 19 , wherein the enzyme comprises a β-1,3-glucanase, a β-1,4-glucanase, a β-1,6-glucanase, a chitosanase, a chitinase, a lyticase, a peptidase, a proteinase, a protease, a mutanolysin, a stapholysin, or a lysozyme.

21. The recombinant Bacillus cereus family member of claim 1 , wherein the protein or peptide that protects a plant from a pathogen protects the plant from a bacterial or fungal pathogen.

22. A method for protecting a plant from a pathogen comprising:

introducing into a plant growth medium a recombinant Bacillus cereus family member of claim 1 or a formulation comprising the recombinant Bacillus cereus family member and an agriculturally acceptable carrier; or

applying to foliage of a plant, a plant seed, or an area surrounding a plant a recombinant Bacillus cereus family member of claim 1 or a formulation comprising the recombinant Bacillus cereus family member and an agriculturally acceptable carrier.

Assignments (3)
SECURITY INTEREST Recorded Jan 23, 2023
From: SPOGEN BIOTECH INC; ELEMENTAL ENZYMES AG AND TURF, LLC; THOMPSON, BRIAN M; THOMPSON, KATIE C
To: GENISYS CREDIT UNION
Reel/Frame 062458/0476 →
SECURITY INTEREST Recorded Jan 23, 2023
From: SPOGEN BIOTECH INC; ELEMENTAL ENZYMES AG AND TURF, LLC; THOMPSON, BRIAN M; THOMPSON, KATIE C
To: GENISYS CREDIT UNION
Reel/Frame 062458/0544 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 12, 2020
From: THOMPSON, BRIAN; THOMPSON, KATIE
To: SPOGEN BIOTECH INC.
Reel/Frame 054030/0215 →
Continuity (5)
Continuation 16145628 · Sep 28, 2018
Division 15414050 · Jan 24, 2017
Division 14213525 · Mar 14, 2014
Provisional Application 61799262 · Mar 15, 2013
Related Publication 20200275664A1 · Sep 3, 2020
Cited By (5)
US 12,351,532 US 12,351,533 US 12,391,729 US 12,527,323 US 12,630,484