IP Library › Granted Patent US 11,447,781
Granted Patent B2
US 11,447,781 · App. 16/790,430 · Granted Sep 20, 2022

Host cells for use in an inducible coexpression system

Inventors: Sean McClain (Vancouver, WA); Mark Valasek (College Station, TX)
Assignee: ABSCI LLC
C12N15/70C07K16/241C07K16/2803C12N9/6429C12P21/02C07K2317/14C07K2317/20C07K2317/21C07K2317/24C07K2317/92C12Y304/21005
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Quick Facts
Patent No.
US 11,447,781
App. No.
16/790,430
Granted
Sep 20, 2022
Kind
B2
Abstract

The present invention provides host cells for use in an inducible coexpression system that is capable of controlled induction of expression of each gene product.

Claims (40)

1. A host cell suitable for expression of a gene product from at least one of two or more inducible promoters selected from the group consisting of Escherichia coli sugar-inducible promoters and propionate-inducible promoters, wherein at least one of said inducible promoters is responsive to an inducer that is different than the inducer of another of said inducible promoters, and wherein none of said inducible promoters is a lactose-inducible promoter;

wherein the host cell has an altered gene function of a gene that affects the reduction/oxidation environment of the host cell cytoplasm; and

wherein the host cell has a reduced level of gene function of a gene encoding a protein that metabolizes a first inducer of a first one of said inducible promoters; and

wherein the host cell has a reduced level of gene function of a gene encoding a protein involved in biosynthesis of a second inducer of a second one of said inducible promoters, wherein the second inducer is different than the first inducer.

2. The host cell of claim 1 wherein at least one of the inducible promoters is selected from the group consisting of: the araBAD promoter, the prpBCDE promoter, the rhaSR promoter, and the xlyA promoter.

3. The host cell of claim 2 , wherein the gene encoding a protein that metabolizes a first inducer of a first one of said inducible promoters is selected from the group consisting of araA, araB, prpB, prpD, rhaA, rhaB, rhaD, xylA, and xylB.

4. The host cell of claim 3 having a deletion within the araBAD operon that results in a reduced level of gene function of a gene encoding a protein that metabolizes L-arabinose.

5. The host cell of claim 2 wherein the gene encoding a protein involved in biosynthesis of a second inducer of a second one of said inducible promoters is selected from the group consisting of scpA/sbm, argK/ygfD, scpB/ygfG, scpC/ygfH, rm1A, rm1B, rm1C, and rm1D.

6. The host cell of claim 5 having a deletion within the scpA-argK-scpBC operon that results in a reduced level of gene function of a gene encoding a protein involved in biosynthesis of propionate.

7. The host cell of claim 1 wherein at least one gene that affects the reduction/oxidation environment of the host cell cytoplasm is trxB.

8. The host cell of claim 7 wherein the host cell expresses a mutant form of AhpC.

9. The host cell of claim 1 wherein the host cell comprises at least one polynucleotide encoding a form of DsbC lacking a signal peptide.

10. The host cell of claim 1 wherein the host cell has an alteration of gene function of at least one gene encoding a transporter protein for an inducer of at least one said inducible promoter.

11. The host cell of claim 10 wherein the host cell has an alteration of gene function of at least one gene encoding a transporter protein for an inducer of at least one said inducible promoter, wherein said gene encoding a transporter protein is selected from the group consisting of araE, araF, araG, araH, rhaT, xylF, xylG, and xylH.

12. The host cell of claim 11 wherein the gene encoding a transporter protein is araE, and the alteration of gene function of said araE gene is changing the promoter controlling expression of the host cell's chromosomal araE gene from an arabinose-inducible promoter to a constitutive promoter.

13. The host cell of claim 1 wherein the host cell is a prokaryotic cell.

14. The host cell of claim 13 wherein the host cell is an E. coli cell.

15. A method of producing a gene product, the method comprising growing a culture of the host cell of claim 1 and adding an inducer of at least one inducible promoter to the culture.

16. A host cell suitable for expression of a gene product from at least one of two or more inducible promoters selected from the group consisting of Escherichia coli sugar-inducible promoters and propionate-inducible promoters, wherein at least one of said inducible promoters is responsive to an inducer that is different than the inducer of another of said inducible promoters, and wherein none of said inducible promoters is a lactose-inducible promoter;

wherein the host cell has an altered gene function of a gene that affects the reduction/oxidation environment of the host cell cytoplasm; and

wherein the host cell has a reduced level of gene function of a gene encoding a protein that metabolizes a first inducer of a first one of said inducible promoters; and

wherein the host cell has a reduced level of gene function of a gene encoding a protein that metabolizes a second inducer of a second one of said inducible promoters, wherein the second inducer is different than the said first inducer.

17. The host cell of claim 16 wherein at least one inducible promoter is selected from the group consisting of: the araBAD promoter, the prpBCDE promoter, the rhaSR promoter, and the xlyA promoter.

18. The host cell of claim 17 wherein at least one gene encoding a protein that metabolizes a first inducer of at least a first one of said inducible promoters is selected from the group consisting of araA, araB, prpB, prpD, rhaA, rhaB, rhaD, xylA, and xylB.

19. The host cell of claim 18 having a deletion within the araBAD operon that results in a reduced level of gene function of a gene encoding a protein that metabolizes L-arabinose.

20. The host cell of claim 16 wherein at least one gene that affects the reduction/oxidation environment of the host cell cytoplasm is trxB.

21. The host cell of claim 20 wherein the host cell expresses a mutant form of AhpC.

22. The host cell of claim 16 wherein the host cell comprises at least one polynucleotide encoding a form of DsbC lacking a signal peptide.

23. The host cell of claim 16 wherein the host cell is a prokaryotic cell.

24. The host cell of claim 16 wherein the host cell is an E. coli cell.

25. An E. coli host cell suitable for expression of a gene product from at least one of two or more inducible promoters, wherein the inducible promoters comprise an L-arabinose-inducible promoter and a propionate-inducible promoter, and

wherein the host cell has an altered gene function of a gene that affects the reduction/oxidation environment of the host cell cytoplasm; and

wherein the host cell has a genome that has been modified to have a deletion within the araBAD operon that results in a reduced level of gene function of a gene encoding a protein that metabolizes L-arabinose, and a deletion within the scpA-argK-scpBC operon that results in a reduced level of gene function of a gene encoding a protein involved in biosynthesis of propionate.

26. The host cell of claim 25 wherein at least one gene that affects the reduction/oxidation environment of the host cell cytoplasm is trxB.

27. The host cell of claim 26 wherein the host cell expresses a mutant form of AhpC.

28. The host cell of claim 25 wherein the host cell comprises at least one polynucleotide encoding a form of DsbC lacking a signal peptide.

29. The host cell of claim 25 wherein the host cell is an E. coli cell comprising the genomic alterations fhuA2, [ion], ompT, ahpC, gal, λatt::pNEB3-rl-cDsbC, (Spec, lad), ΔtrxB, sulA11, R(mcr-73::miniTn10--Tets)2, [dcm], R(zgb-210::Tn10--Tet S ), endA1, Δgor, and A(mcrC-mrr)114:1S10,

wherein the deletion of trxB in the host cell alters the gene function of a gene that affects the reduction/oxidation environment of the host cell cytoplasm, and

wherein the host cell has a genome that has been further modified to have a deletion within the araBAD operon that results in a reduced level of gene function of a gene encoding a protein that metabolizes L-arabinose, and a deletion within the scpA-argK-scpBC operon that results in a reduced level of gene function of a gene encoding a protein involved in biosynthesis of propionate.

30. The host cell of claim 29 further having a point mutation in the rpsL gene that results in a streptomycin-resistant phenotype.

Assignments (3)
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNEE NAME PREVIOUSLY RECORDED AT REEL: 055921 FRAME: 0049. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT . Recorded Jan 4, 2023
From: MCCLAIN, SEAN; VALASEK, MARK
To: ABSCI, LLC
Reel/Frame 062291/0288 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 6, 2022
From: ABSCI, LLC
To: ABSCI CORPORATION
Reel/Frame 061336/0116 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 14, 2021
From: MCCLAIN, SEAN; VALASEK, MARK
To: ABSCI LLC
Reel/Frame 055921/0049 →
Continuity (5)
Continuation 15434869 · Feb 16, 2017
Continuation 14419653
Provisional Application 61747246 · Dec 29, 2012
Provisional Application 61679751 · Aug 5, 2012
Related Publication 20200172915A1 · Jun 4, 2020