IP Library Granted Patent US 12,203,927
Granted Patent B2
US 12,203,927 · App. 17/012,139 · Granted Jan 21, 2025

Methods for immunoregulation by modulating plasminogen-apple-nematode (PAN) domain-containing proteins

Inventors: Wellington Muchero (Oak Ridge, TN); Carly M. Shanks (New York, NY); Debjani Pal (Knoxville, TN); Kuntal De (Knoxville, TN)
Assignee: UT-BATTELLE, LLC
G01N33/5041A61P15/08A61P35/00C12N9/22C12N15/11C12N15/113C12N15/8279G01N33/6818C12N2310/11C12N2310/20G01N2500/00
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Quick Facts
Patent No.
US 12,203,927
App. No.
17/012,139
Granted
Jan 21, 2025
Kind
B2
Abstract

The present disclosure based on the inventors' recognition that PAN domain containing proteins play important immune regulating functions. Disclosed herein are methods for modulating immune responses in plants and animals, improving in vitro fertilization efficiency, and inhibiting human cell division and cellular migration in cancer cells. Also disclosed herein are genetically modified plants that are resistant to pathogenic infections.

Claims (5)

1. A method for screening for a therapeutic compound targeting a PAN domain in a protein, comprising:

contacting the protein comprising the PAN domain with a candidate therapeutic compound, and assessing whether the compound binds specifically to the PAN domain;

wherein the protein is selected from the group consisting of a plant protein, an animal protein, a bacterial protein, a viral protein and a fungal protein; and

wherein the PAN domain has a consensus sequence as shown in SEQ ID NO: 23.

2. The method of claim 1 , wherein the PAN domain-containing protein is selected from the group consisting of hepatocyte growth factor (HGF), natriuretic peptide receptor 3 (NPR3), natriuretic peptide receptor 1 (NPR1), WRKY transcription factors, receptor-like kinase 5 (RLK5), receptor-like kinases 7 (RLK7), and S-locus receptor kinase (SRK) polypeptides.

Assignments (2)
CONFIRMATORY LICENSE Recorded Apr 14, 2022
From: UT-BATTELLE, LLC
To: U. S. DEPARTMENT OF ENERGY
Reel/Frame 059600/0787 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 5, 2022
From: MUCHERO, WELLINGTON; SHANKS, CARLY M.; PAL, DEBJANI; DE, KUNTAL
To: UT-BATTELLE, LLC
Reel/Frame 059497/0930 →
Continuity (2)
Provisional Application 62896605 · Sep 6, 2019
Related Publication 20210072228A1 · Mar 11, 2021
References Cited (65)
US 7265204B2 · Hresko · 2007 [cited by examiner]
US 10738322B2 · Kaloshian et al. · 2020 [cited by applicant]
US 20030104505A1 · Robison · 2003 [cited by applicant]
US 20100055099A1 · Filvaroff et al. · 2010 [cited by applicant]
US 20170305985A1 · Cochran et al. · 2017 [cited by applicant]
US 20180119168A1 · Kaloshian et al. · 2018 [cited by applicant]
WO 0132874A2 · 2001 [cited by applicant]
WO 2004070015A2 · 2004 [cited by applicant]
Yang Y. et al., “Genome-Wide Analysis of Lectin Receptor-Like Kinases in Populus”, BMC Genomics 17(1):699 (Sep. 1, 2016). [cited by applicant]
International Search Report and Written Opinion dated Feb. 5, 2021 received in International Application No. PCT/US20/49303. [cited by applicant]
“Invitation to Pay Additional Fees” dated Nov. 24, 2020, received in a corresponding foreign application, namely International Application No. PCT/US20/49303. [cited by applicant]
Armstrong, P. B., “Role of α2-macroglobulin in the immune responses of invertebrates”, Invertebrate Survival Journal, 7(2), 165-180 (2010). [cited by applicant]
Baglia, F. A. et al. “A Binding Site for the Kringle II Domain of Prothrombin in the Apple 1 Domain of Factor XI.” Journal of Biological Chemistry 275.41: 31954-31962 (Oct. 13, 2000. [cited by applicant]
Berbee, M. L., “The phylogeny of plant and animal pathogens in the Ascomycot”, Physiological and Molecular Plant Pathology, 59(4), 165-187 (2001). [cited by applicant]
Bertschinger, H. J. et al., “Porcine zona pellucida vaccine immunocontraception of African elephant ( [cited by applicant]
Bhattacharya, S. et al., “Bacterial Plasminogen Receptors Utilize Host Plasminogen System for Effective Invasion and Dissemination”, BioMed Research International, vol. 2012, Article ID 482096, 19 pgs.(2012). [cited by applicant]
Brogden, K. A. et al., “Antimicrobial peptides in animals and their role in host defences”, International Journal of Antimicrobial Agents 22.5: 465-478 (2003). [cited by applicant]
Champer, J. et al., “Cheating evolution: engineering gene drives to manipulate the fate of wild populations”, Nature Reviews Genetics, 17(3), 146 (Mar. 2016). [cited by applicant]
Diamond, G. et al., “Tracheal antimicrobial peptide, a cysteine-rich peptide from mammalian tracheal mucosa: peptide isolation and cloning of a cDNA”, Proceedings of the National Academy of Sciences, 88(9), 3952-3956 (M… [cited by applicant]
Etxebeste, O. et al., “GmcA is a putative glucose-methanol-choline oxidoreductase required for the induction of asexual development in Aspergillus nidulans”, PLoS One, 7(7), e40292 (Jul. 2012). [cited by applicant]
Frick, I. M. et al., “The contact system—a novel branch of innate immunity generating antibacterial peptides”, The EMBO Journal, 25(23), 5569-5578 (2006). [cited by applicant]
Ghosh, A. K. et al., “Surface-expressed enolases of Plasmodium and other pathogens”, Memorias do Instituto Oswaldo Cruz, 106 (Suppl. 1), 85-90 (2011). [cited by applicant]
Gong, H. et al., “A novel PAN/apple domain-containing protein from Toxoplasma gondii: characterization and receptor identification”, PLoS One, 7(1), e30169 (Jan. 2012). [cited by applicant]
Grünwald, N. J. et al., “Emergence of the sudden oak death pathogen Phytophthora ramorum”, Trends in microbiology, 20(3), 131-138 (Mar. 2012). [cited by applicant]
Herwald, H. et al., “Mapping of the Discontinuous Kininogen Binding Site of Prekallikrein: A Distal Binding Segment is Located in the Heavy Chain Domain A4”, Journal of Biological Chemistry, 271(22), 13061-13067 (May 31… [cited by applicant]
Ho, D. H. et al., “A binding site for heparin in the apple 3 domain of factor XI”, Journal of Biological Chemistry, 273(26), 16382-16390 (Jun. 26, 1998). [cited by applicant]
Holdich, D. M., et al., “A review of the ever increasing threat to European crayfish from non-indigenous crayfish species”, Knowledge and management of aquatic ecosystems, 11, pp. 394-395, (2009). [cited by applicant]
Huizinga, E. G. et al., “The structure of leech anti-platelet protein, an inhibitor of haemostasis”, Acta Crystallographica Section D: Biological Crystallography, D57(8), 1071-1078 (2001). [cited by applicant]
Jones II, D. S. et al., “Engineering hepatocyte growth factor fragments with high stability and activity as Met receptor agonists and antagonists”, Proceedings of the National Academy of Sciences, 108(32), 13035-13040 (… [cited by applicant]
Kereszt, A. et al., “Impact of plant peptides on symbiotic nodule development and functioning”, Frontiers in Plant Science, 9 (Jul. 17, 2018). [cited by applicant]
Kirsch, R. et al., “Host plant shifts affect a major defense enzyme in Chrysomela lapponica”, Proceedings of the National Academy of Sciences, 108(12), 4897-4901 (Mar. 22, 2011). [cited by applicant]
Kliukova, M. et al., “NCR Peptides—Plant Effectors Governing Terminal Differentiation of Nodule Bacteria into the Symbiotic Form”, Agricultural Biology, vol. 52, No. 5, 869-877 (2017). [cited by applicant]
Krem, M. M. et al., “Evolution of enzyme cascades from embryonic development to blood coagulation”, Trends in biochemical sciences, 27(2), 67-74 (Feb. 2, 2002). [cited by applicant]
Labbé, J. et al., “Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase”, Nature Plants, 5(7), 676 (Jul. 2019). [cited by applicant]
Lähteenmäki, K. et al., “Bacterial plasminogen activators and receptors”, FEMS microbiology reviews, 25(5), 531-552 (2001). [cited by applicant]
Lietha, D. et al., “Crystal structures of NK1-heparin complexes reveal the basis for NK1 activity and enable engineering of potent agonists of the MET receptor”, The EMBO Journal, 20(20), 5543-5555 (2001). [cited by applicant]
Long, A. T. et al., “Contact system revisited: an interface between inflammation, coagulation, and innate immunity”, Journal of Thrombosis and Haemostasis, 14(3), 427-437 (2016). [cited by applicant]
Loof, T. G. et al., “The role of coagulation/fibrinolysis during [cited by applicant]
Mahajan, T. et al., “Embryogenesis: A comprehensive review”, Journal of Entomology and Zoology Studies, 6(1): 1151-1153 (2018). [cited by applicant]
Marshall, E. et al., “Cysteine-rich peptides (CRPs) mediate diverse aspects of cell-cell communication in plant reproduction and development”, Journal of experimental botany, 62(5), 1677-1686 (2011). [cited by applicant]
Mattsson, E. et al., “ [cited by applicant]
Mcmullen, B. A. et al., “Location of the disulfide bonds in human plasma prekallikrein: the presence of four novel apple domains in the amino-terminal portion of the molecule”, Biochemistry, 30(8), 2050-2056 (1991). [cited by applicant]
Mcpherson, B. A. et al., “Attraction of ambrosia and bark beetles to coast live oaks infected by Phytophthora ramorum”, Agricultural and Forest Entomology, 10(4), 315-321 (2008). [cited by applicant]
Monné, M. et al., “Tracking down the ZP domain: from the mammalian zona pellucida to the molluscan vitelline envelope”, Seminars in Reproductive Medicine, vol. 24, No. 4, pp. 204-216 (2006). [cited by applicant]
Muchero, W. et al., “Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree”, Proceedings of the National Academy of Sciences, 115(45):115… [cited by applicant]
Naithani, S. et al., “Structural modules for receptor dimerization in the S-locus receptor kinase extracellular domain. Proceedings of the National Academy of Sciences”, 104(29), 12211-12216 (Jul. 17, 2007). [cited by applicant]
Papaccio, F. et al., “HGF/MET and the Immune System: Relevance for Cancer Immunotherapy”, International Journal of Molecular Sciences, 19(11), 3595, pp. 1-13 (2018). [cited by applicant]
Penrith, M. L. et al., “Review of African swine fever: transmission, spread and control”, Journal of the South African Veterinary Association, 80(2), 58-62 (2009). [cited by applicant]
Rahfeld, P. et al., “Independently recruited oxidases from the glucose-methanol-choline oxidoreductase family enabled chemical defences in leaf beetle larvae (subtribe Chrysomelina) to evolve”, Proceedings of the Royal … [cited by applicant]
Raoult, D. et al., “Redefining Viruses: Lessons from Mimivirus”, Nature Reviews Microbiology, 6(4), pp. 315-319 (Apr. 2008). [cited by applicant]
Silverstein, K. A. et al., “Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants”, The Plant Journal, 51(2), 262-280 (2007). [cited by applicant]
Srinivasan, P. et al., “Disrupting malaria parasite AMA1-RON2 interaction with a small molecule prevents erythrocyte invasion”, Nature Communications, 4, 2261, pp. 1-9 (2013). [cited by applicant]
Summerell, B.A., “Resolving Fusarium: Current Status of the Genus”, Annual Review of Phytopathology, 57, pp. 323-339 and v-vii (2019). [cited by applicant]
Takasaki, T. et al., “The S receptor kinase determines self-incompatibility in [cited by applicant]
Tordai, H. et al., “The PAN module: the N-terminal domains of plasminogen and hepatocyte growth factor are homologous with the apple domains of the prekallikrein family and with a novel domain found in numerous nematode… [cited by applicant]
Tyler, J. S. et al., “The C-terminus of Toxoplasma RON2 provides the crucial link between AMA1 and the host-associated invasion complex”, PLoS pathogens, 7(2), e1001282 (Feb. 2011). [cited by applicant]
Ventura, T. et al., “ Redefining metamorphosis in spiny lobsters: molecular analysis of the phyllosoma to puerulus transition in Sagmariasus verreauxi”, Scientific Reports, 5, 13537, pp. 1-14 (2015). [cited by applicant]
Wang, G. et al., “Low-density lipoprotein receptor-related protein-1 facilitates heme scavenging after intracerebral hemorrhage in mice”, Journal of Cerebral Blood Flow & Metabolism, 37(4), 1299-1310 (2017). [cited by applicant]
Yap, N. V. et al., “The evolution of the scavenger receptor cysteine-rich domain of the class A scavenger receptors”, Frontiers in Immunology, vol. 6, article 342, pp. 1-9 (Jul. 6, 2015). [cited by applicant]
Zhou, H. et al., “The solution structure of the N-terminal domain of hepatocyte growth factor reveals a potential heparin-binding site”, Structure, 6(1), 109-116 (1998). [cited by applicant]
Fernandes, et al., “Zona Pellucida Domain Proteins Remodel the Apical Compartment for Localized Cell Shape Changes”, Cell Press, Jan. 19, 2010, Developmental Cell 18, Elsevier, Inc., pp. 64-76, Supplemental Information,… [cited by applicant]
Liu P-L et al., “Duplication and Diversification of Lectin Receptor-Like Kinases (LecRLK) Genes in Soybean”, Scientific Reports 8(1): DOI: 10.1038/s41598-018-24266-6 (Apr. 12, 2018). [cited by applicant]
Ma N. et al., “Genome-Wide Identification of Lectin Receptor Kinases in Pear: Functional Characterization of the L-Type LecRLK Gene PbLRK138”, Gene 661:11-21 (Mar. 27, 2018). [cited by applicant]
Naithani S. et al., “Structural Modules for Receptor Dimerization in the S-Locus Receptor Kinase Extracellular Domain”, PNAS 104(29):12211-12216 (Jul. 17, 2007). [cited by applicant]
European Supplementary Partial Search Report dated Oct. 2, 2023 received in European Application No. 20 86 0537.8. [cited by applicant]