IP Library Granted Patent US 12,548,243
Granted Patent B2
US 12,548,243 · App. 17/070,643 · Granted Feb 10, 2026

3D-organized nanomaterials through DNA-prescribed and valence-controlled material

Inventors: Oleg Gang (Setauket, NY); Ye Tian (Nanjing, CN); Jason S. Kahn (New York, NY); Yan Xiong (New York, NY); Brian Minevich (New York, NY); Sanat K. Kumar (New York, NY)
Assignee: THE TRUSTEES OF COLUMBIA UNIVERSITY IN THE CITY OF NEW YORK
G06T17/00C12Q1/68G16B15/10B82Y30/00
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,548,243
App. No.
17/070,643
Granted
Feb 10, 2026
Kind
B2
Abstract

The present subject matter relates to a voxel and methods of organizing an object into a three-dimensional (3D) array using the voxel. The voxel can include a plurality of frames including at least one single stranded (ss) DNA motif with at least one free base, wherein the at least one ssDNA motif hybridizes with a complementary strand fragment of other frames.

Claims (12)

1 . A voxel, comprising

a plurality of frames including at least one single stranded (ss) DNA motif with at least one free base, wherein the at least one ssDNA motif hybridizes with a complementary strand fragment of other frames through vertex-to-vertex hybridization; and

at least one object, wherein the at least one object is located within the voxel.

2 . The voxel of claim 1 , wherein the plurality of frames comprises stand-alone DNA frames, polyhedral frames, or a combination thereof.

3 . The voxel of claim 1 , wherein the plurality of frames forms a tetrahedra framework, an octahedra framework, a cubic framework, or a combination thereof.

4 . The voxel of claim 1 , wherein the at least one object comprises a gold nano particle, a streptavidin, a protein, a quantum dot (QD), an enzyme, or a combination thereof.

5 . The voxel of claim 4 , wherein the object is a functionalized object.

6 . The voxel of claim 1 , wherein the voxel forms a three-dimensional (3D) origami lattice.

7 . The voxel of claim 6 , wherein the 3D origami lattice is a body-centered-cubic (BCC) lattice, a simple cubic (SC) lattice, or a cubic diamond lattice.

8 . The voxel of claim 1 , wherein the voxel is a DNA-prescribed voxel.

9 . The voxel of claim 1 , wherein the voxel is a valence-controlled voxel.

10 . The voxel of claim 1 , wherein the at least one object comprises a metallic particle, a semiconductor particle, a protein superlattice, or combinations thereof.

Assignments (4)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 16, 2024
From: BROOKHAVEN SCIENCE ASSOCIATES, LLC
To: THE TRUSTEES OF COLUMBIA UNIVERSITY IN THE CITY OF NEW YORK
Reel/Frame 068912/0896 →
CONFIRMATORY LICENSE Recorded Sep 27, 2023
From: COLUMBIA UNIV NEW YORK MORNINGSIDE
To: UNITED STATES DEPARTMENT OF ENERGY
Reel/Frame 065047/0416 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 19, 2021
From: TIAN, YE
To: BROOKHAVEN SCIENCE ASSOCIATES, LLC
Reel/Frame 057232/0121 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 18, 2021
From: THE TRUSTEES OF COLUMBIA UNIVERSITY IN THE CITY OF NEW YORK
To: TIAN, YE
Reel/Frame 057214/0536 →
Continuity (2)
Provisional Application 62914792 · Oct 14, 2019
Related Publication 20210264663A1 · Aug 26, 2021
References Cited (61)
US 20050009079A1 · Anders et al. · 2005 [cited by applicant]
US 20160176988A1 · Zhang et al. · 2016 [cited by applicant]
WO WO2005034205A2 · 2005 [cited by applicant]
WO WO2009149091A1 · 2009 [cited by applicant]
WO WO2016109911A1 · 2016 [cited by applicant]
Tian et al., Lattice engineering through nanoparticle-DNA frameworks, Nature Materials, Feb. 2016, 15, 654-661 (Year: 2016). [cited by examiner]
Wang et al., A DNA Crystal Designed to Contain Two Molecules per Asymmetric Unit, Journal of the American Chemical Society, Oct. 2010, 132, 15471-15473 (Year: 2010). [cited by examiner]
Agarwal et al., “Mesophase behaviour of polyhedral particles,” Nat Mater 10:230-235 (2011). [cited by applicant]
Baimuratov et al., “Quantum-dot supercrystals for future nanophotonics,” Scientific Reports 3:1727 (2013) 9 pgs. [cited by applicant]
Chang et al., “High near-infrared photoluminescence quantum efficiency from PbS nanocrystals in polymer films,” Synthetic Metals 148:257-261 (2005). [cited by applicant]
Chen et al., “Synthesis from DNA of a molecule with the connectivity of a cube,” Nature 350:631-633 (1991). [cited by applicant]
Church et al., “Next-Generation Digital Information Storage in DNA,” Science 337:1628 (2012) 2 pgs. [cited by applicant]
Damasceno et al., “Predictive Self-Assembly of Polyhedra into Complex Structures,” Science 337(6093):453-457 (2012). [cited by applicant]
Damasceno et al., “Crystalline assemblies and densest packings of a family of truncated tetrahedra and the role of directional entropic forces,” ACS Nano 6:609-614 (2012). [cited by applicant]
Douglas et al., “Self-assembly of DNA into nanoscale three-dimensional shapes,” Nature 459:414-418 (2009). [cited by applicant]
Fu et al., “Interenzyme Substrate Diffusion for an Enzyme Cascade Organized on Spatially Addressable DNA Nanostructures,” Journal of the American Chemical Society 134:5516-5519 (2012). [cited by applicant]
Gantapara et al., “Phase Diagram and Structural Diversity of a Family of Truncated Cubes: Degenerate Close-Packed Structures and Vacancy-Rich States,” Phys Rev Lett 111:015501-1-015501-5 (2013) 13 pgs. [cited by applicant]
Halverson et al., “DNA-programmed mesoscopic architecture,” Phys. Rev. E 87:062310 (2013). [cited by applicant]
Hao et al., “A device that operates within a self-assembled 3D DNA crystal,” Nat. Chem. 9:824-827 (2017). [cited by applicant]
He et al., “Hierarchical self-assembly of DNA into symmetric supramolecular polyhedral,” Nature 452:198-201 (2008). [cited by applicant]
Jang et al., “White-Light-Emitting Diodes with Quantum Dot Color Converters for Display Backlights,” Advanced Materials 22:3076-3080 (2010). [cited by applicant]
Jones et al., “DNA-nanoparticle superlattices formed from anisotropic building blocks,” Nature Materials 9:913-917 (2010). [cited by applicant]
Julin et al., “DNA origami directed 3D nanoparticle superlattice via electrostatic assembly,” Nanoscale 11:4546-4551 (2019). [cited by applicant]
Kagan et al., “Electronic Energy Transfer in CdSe Quantum Dot Solids,” Physical Review Letters 76(9): 1517-1520 (1996). [cited by applicant]
Kim et al., “Evidence of Quantum Resonance in Periodically-Ordered Three-Dimensional Superlattice of CdTe Quantum Dots,” Nano Letters 15:4343-4347 (2015). [cited by applicant]
Kim et al., “Full-colour quantum dot displays fabricated by transfer printing,” Nature Photonics 5:176-182 (2011). [cited by applicant]
Lalander et al., “DNA-Directed Self-Assembly of Gold Nanoparticles onto Nanopatterned Surfaces: Controlled Placement of Individual Nanoparticles into Regular Arrays,” ACS Nano 4(10):6153-6161 (2010). [cited by applicant]
Lee et al., “A mechanical metamaterial made from a DNA hydrogel,” Nat. Nanotechnol. 7:816-820 (2012). [cited by applicant]
Liu et al., “Diamond family of nanoparticle superlattices,” Science 351:582-586 (2016). [cited by applicant]
Lu et al., “Superlattices assembled through shape-induced directional binding,” Nature Communications 6:6912 (2015) 10 pgs. [cited by applicant]
Macfarlane et al., “Assembly and organization processes in DNA-directed colloidal crystallization,” PNAS 106(26):10493-10498 (2009). [cited by applicant]
Macfarlane et al., “Nanoparticle superlattice engineering with DNA,” Science 334:204-208 (2011). [cited by applicant]
Wertheim, “Fluids with Highly Directional Attractive Forces. III. Multiple Attraction Sites,” J. Stat. Phys 42(3/4):459-476 (1986). [cited by applicant]
Murray et al., “Synthesis and Characterization of Monodisperse Nanocrystals and Close-Packed Nanocrystal Assemblies,” Annual Review of Materials Science 30:545-610 (2000). [cited by applicant]
Niemeyer et al., “DNA-Directed Assembly of Bienzymic Complexes from In Vivo Biotinylated NAD(P)H:FMN Oxidoreductase and Luciferase,” ChemBioChem, 02-03:242-245 (2002). [cited by applicant]
Nykypanchuk et al., “DNA-guided crystallization of colloidal nanoparticles,” Nature 451:549-552 (2008). [cited by applicant]
Oliver, J. Quantum Dots: Global Market Growth and Future Commercial Prospects, BCC Research NAN027E (2016). [cited by applicant]
Pal et al., “DNA Directed Self-Assembly of Anisotropic Plasmonic Nanostructures,” Journal of the American Chemical Society 133(44):17606-17609 (2011). [cited by applicant]
Park et al., “DNA-programmable nanoparticle crystallization,” Nature 451:553-556 (2008). [cited by applicant]
PI: Hao Yan, Awardee Organization: Arizona State University, “DNA Directed Self-Assembly of Multicomponent Nanoarchitectures,” NSF Grant #: 0545652 (2006). [cited by applicant]
PI: Thom LaBean, Awardee Organization: North Carolina State University, “Collaborative Research: Photonic and Electronic Devices Based on Self-Assembling DNA Templates,” NSF Grant #: 1608847 (2016). [cited by applicant]
Qi et al., “DNA-directed self-assembly of shape-controlled hydrogels,” Nature Communications 4:2275-2285 (2013). [cited by applicant]
Rogers et al., “Direct measurements of DNA-mediated colloidal interactions and their quantitative modeling,” PNAS 108(38):15687-15692 (2011). [cited by applicant]
Rothemund et al., “Folding DNA to create nanoscale shapes and patterns,” Nature 440:297-302 (2006). [cited by applicant]
Seeman, “DNA in a material world,” Nature 421:427-431 (2003). [cited by applicant]
Seeman et al., “Nucleic Acid Junctions and Lattices,” J. Theor. Biol., 99:237-247 (1982). [cited by applicant]
Sharma et al., “DNA-Tile-Directed Self-Assembly of Quantum Dots into two-Dimensional Nanopatterns,” Angewandte Chemie 47(28):5157-5159 (2008). [cited by applicant]
Talapin et al., “Quasicrystalline order in self-assembled binary nanoparticle superlattices,” Nature 461:964-967 (2009) [with English abstract]. [cited by applicant]
Tang et al., “DNA-Directed Self-Assembly of Graphene Oxide with Applications to Ultrasensitive Oligonucleotide Assay,” ACS Nano 5(5):3817-3822 (2011). [cited by applicant]
Tian et al., “Lattice Engineering via Nanoparticle-DNA Frameworks,” Nat. Mater. 15:654-661 (2016). [cited by applicant]
Travesset, “Binary nanoparticle superlattices of soft-particle systems,” Proc. Natl. Acad. Sci. USA 112:9563-9567 (2015). [cited by applicant]
Varilly et al., “A general theory of DNA-mediated and other valence-limited colloidal interactions,” The Journal of Chemical Physics 137:094108 (2012) 16 pgs. [cited by applicant]
Vo et al., “Stoichiometric control of DNA-grafted colloid self-assembly,” Proc. Natl. Acad. Sci. USA 112:4982-4987 (2015). [cited by applicant]
Wang et al., “An Organic Semiconductor Organized into 3D DNA Arrays by ‘Bottom-Up’ Rational Design,” Angew. Chem. Int. Edit. 56:6445-6448 (2017). [cited by applicant]
Wilner et al., “Enzyme cascades activated on topologically programmed DNA scaffolds,” Nature Nanotechnology 4:249-249 (2009). [cited by applicant]
Wood et al., “Colloidal quantum dot light-emitting devices,” Nano Reviews 1:5202 (2010) 7 pgs. [cited by applicant]
Yager et al., “Periodic lattices of arbitrary nano-objects: modeling and applications for self-assembled systems,” Journal of Applied Crystallography 47:118-129 (2014). [cited by applicant]
Zhang et al., “3D DNA Origami Crystals,” Advanced Materials 30:1800273 (2018) 7 pgs. [cited by applicant]
Zhao et al., “Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion,” Nature Communications 7:10619 (2016) 9 pgs. [cited by applicant]
Zheng et al., “Two-Dimensional Nanoparticle Arrays Show the Organizational Power of Robust DNA Motifs,” Nano Letters 6(7):1502-1504 (2006). [cited by applicant]
Zheng et al., “From Molecular to Macroscopic via the Rational Design of a Self-Assembled 3D DNA Crystal,” Nature 461:74-77 (2009). [cited by applicant]